1.Applications of Single-Cell Omics Technologies for Induced Pluripotent Stem Cell-Based Cardiovascular Research
Hyunjoon KIM ; Sohee CHOI ; HyoJung HEO ; Su Han CHO ; Yuna LEE ; Dohyup KIM ; Kyung Oh JUNG ; Siyeon RHEE
International Journal of Stem Cells 2025;18(1):37-48
		                        		
		                        			
		                        			 Single-cell omics technologies have transformed our investigation of genomic, transcriptomic, and proteomic landscapes at the individual cell level. In particular, the application of single-cell RNA sequencing has unveiled the complex transcriptional variations inherent in cardiac cells, offering valuable perspectives into their dynamics. This review focuses on the integration of single-cell omics with induced pluripotent stem cells (iPSCs) in the context of cardiovascular research, offering a unique avenue to deepen our understanding of cardiac biology. By synthesizing insights from various single-cell technologies, we aim to elucidate the molecular intricacies of heart health and diseases. Beyond current methodologies, we explore the potential of emerging paradigms such as single-cell/spatial omics, delving into their capacity to reveal the spatial organization of cellular components within cardiac tissues. Furthermore, we anticipate their transformative role in shaping the future of cardiovascular research. This review aims to contribute to the advancement of knowledge in the field, offering a comprehensive perspective on the synergistic potential of transcriptomic analyses, iPSC applications, and the evolving frontier of spatial omics. 
		                        		
		                        		
		                        		
		                        	
2.Applications of Single-Cell Omics Technologies for Induced Pluripotent Stem Cell-Based Cardiovascular Research
Hyunjoon KIM ; Sohee CHOI ; HyoJung HEO ; Su Han CHO ; Yuna LEE ; Dohyup KIM ; Kyung Oh JUNG ; Siyeon RHEE
International Journal of Stem Cells 2025;18(1):37-48
		                        		
		                        			
		                        			 Single-cell omics technologies have transformed our investigation of genomic, transcriptomic, and proteomic landscapes at the individual cell level. In particular, the application of single-cell RNA sequencing has unveiled the complex transcriptional variations inherent in cardiac cells, offering valuable perspectives into their dynamics. This review focuses on the integration of single-cell omics with induced pluripotent stem cells (iPSCs) in the context of cardiovascular research, offering a unique avenue to deepen our understanding of cardiac biology. By synthesizing insights from various single-cell technologies, we aim to elucidate the molecular intricacies of heart health and diseases. Beyond current methodologies, we explore the potential of emerging paradigms such as single-cell/spatial omics, delving into their capacity to reveal the spatial organization of cellular components within cardiac tissues. Furthermore, we anticipate their transformative role in shaping the future of cardiovascular research. This review aims to contribute to the advancement of knowledge in the field, offering a comprehensive perspective on the synergistic potential of transcriptomic analyses, iPSC applications, and the evolving frontier of spatial omics. 
		                        		
		                        		
		                        		
		                        	
3.Applications of Single-Cell Omics Technologies for Induced Pluripotent Stem Cell-Based Cardiovascular Research
Hyunjoon KIM ; Sohee CHOI ; HyoJung HEO ; Su Han CHO ; Yuna LEE ; Dohyup KIM ; Kyung Oh JUNG ; Siyeon RHEE
International Journal of Stem Cells 2025;18(1):37-48
		                        		
		                        			
		                        			 Single-cell omics technologies have transformed our investigation of genomic, transcriptomic, and proteomic landscapes at the individual cell level. In particular, the application of single-cell RNA sequencing has unveiled the complex transcriptional variations inherent in cardiac cells, offering valuable perspectives into their dynamics. This review focuses on the integration of single-cell omics with induced pluripotent stem cells (iPSCs) in the context of cardiovascular research, offering a unique avenue to deepen our understanding of cardiac biology. By synthesizing insights from various single-cell technologies, we aim to elucidate the molecular intricacies of heart health and diseases. Beyond current methodologies, we explore the potential of emerging paradigms such as single-cell/spatial omics, delving into their capacity to reveal the spatial organization of cellular components within cardiac tissues. Furthermore, we anticipate their transformative role in shaping the future of cardiovascular research. This review aims to contribute to the advancement of knowledge in the field, offering a comprehensive perspective on the synergistic potential of transcriptomic analyses, iPSC applications, and the evolving frontier of spatial omics. 
		                        		
		                        		
		                        		
		                        	
4.Construction and validation of a synthetic phage-displayed nanobody library
Minju KIM ; Xuelian BAI ; Hyewon IM ; Jisoo YANG ; Youngju KIM ; Minjoo MJ KIM ; Yeonji OH ; Yuna JEON ; Hayoung KWON ; Seunghyun LEE ; Chang-Han LEE
The Korean Journal of Physiology and Pharmacology 2024;28(5):457-467
		                        		
		                        			
		                        			 Nanobodies derived from camelids and sharks offer unique advantages in therapeutic applications due to their ability to bind to epitopes that were previously inaccessible. Traditional methods of nanobody development face challenges such as ethical concerns and antigen toxicity. Our study presents a synthetic, phagedisplayed nanobody library using trinucleotide-directed mutagenesis technology, which allows precise amino acid composition in complementarity-determining regions (CDRs), with a focus on CDR3 diversity. This approach avoids common problems such as frameshift mutations and stop codon insertions associated with other synthetic antibody library construction methods. By analyzing FDA-approved nanobodies and Protein Data Bank sequences, we designed sub-libraries with different CDR3 lengths and introduced amino acid substitutions to improve solubility. The validation of our library through the successful isolation of nanobodies against targets such as PD-1, ATXN1 and STAT3 demonstrates a versatile and ethical platform for the development of high specificity and affinity nanobodies and represents a significant advance in biotechnology. 
		                        		
		                        		
		                        		
		                        	
5.Construction and validation of a synthetic phage-displayed nanobody library
Minju KIM ; Xuelian BAI ; Hyewon IM ; Jisoo YANG ; Youngju KIM ; Minjoo MJ KIM ; Yeonji OH ; Yuna JEON ; Hayoung KWON ; Seunghyun LEE ; Chang-Han LEE
The Korean Journal of Physiology and Pharmacology 2024;28(5):457-467
		                        		
		                        			
		                        			 Nanobodies derived from camelids and sharks offer unique advantages in therapeutic applications due to their ability to bind to epitopes that were previously inaccessible. Traditional methods of nanobody development face challenges such as ethical concerns and antigen toxicity. Our study presents a synthetic, phagedisplayed nanobody library using trinucleotide-directed mutagenesis technology, which allows precise amino acid composition in complementarity-determining regions (CDRs), with a focus on CDR3 diversity. This approach avoids common problems such as frameshift mutations and stop codon insertions associated with other synthetic antibody library construction methods. By analyzing FDA-approved nanobodies and Protein Data Bank sequences, we designed sub-libraries with different CDR3 lengths and introduced amino acid substitutions to improve solubility. The validation of our library through the successful isolation of nanobodies against targets such as PD-1, ATXN1 and STAT3 demonstrates a versatile and ethical platform for the development of high specificity and affinity nanobodies and represents a significant advance in biotechnology. 
		                        		
		                        		
		                        		
		                        	
6.Construction and validation of a synthetic phage-displayed nanobody library
Minju KIM ; Xuelian BAI ; Hyewon IM ; Jisoo YANG ; Youngju KIM ; Minjoo MJ KIM ; Yeonji OH ; Yuna JEON ; Hayoung KWON ; Seunghyun LEE ; Chang-Han LEE
The Korean Journal of Physiology and Pharmacology 2024;28(5):457-467
		                        		
		                        			
		                        			 Nanobodies derived from camelids and sharks offer unique advantages in therapeutic applications due to their ability to bind to epitopes that were previously inaccessible. Traditional methods of nanobody development face challenges such as ethical concerns and antigen toxicity. Our study presents a synthetic, phagedisplayed nanobody library using trinucleotide-directed mutagenesis technology, which allows precise amino acid composition in complementarity-determining regions (CDRs), with a focus on CDR3 diversity. This approach avoids common problems such as frameshift mutations and stop codon insertions associated with other synthetic antibody library construction methods. By analyzing FDA-approved nanobodies and Protein Data Bank sequences, we designed sub-libraries with different CDR3 lengths and introduced amino acid substitutions to improve solubility. The validation of our library through the successful isolation of nanobodies against targets such as PD-1, ATXN1 and STAT3 demonstrates a versatile and ethical platform for the development of high specificity and affinity nanobodies and represents a significant advance in biotechnology. 
		                        		
		                        		
		                        		
		                        	
7.Construction and validation of a synthetic phage-displayed nanobody library
Minju KIM ; Xuelian BAI ; Hyewon IM ; Jisoo YANG ; Youngju KIM ; Minjoo MJ KIM ; Yeonji OH ; Yuna JEON ; Hayoung KWON ; Seunghyun LEE ; Chang-Han LEE
The Korean Journal of Physiology and Pharmacology 2024;28(5):457-467
		                        		
		                        			
		                        			 Nanobodies derived from camelids and sharks offer unique advantages in therapeutic applications due to their ability to bind to epitopes that were previously inaccessible. Traditional methods of nanobody development face challenges such as ethical concerns and antigen toxicity. Our study presents a synthetic, phagedisplayed nanobody library using trinucleotide-directed mutagenesis technology, which allows precise amino acid composition in complementarity-determining regions (CDRs), with a focus on CDR3 diversity. This approach avoids common problems such as frameshift mutations and stop codon insertions associated with other synthetic antibody library construction methods. By analyzing FDA-approved nanobodies and Protein Data Bank sequences, we designed sub-libraries with different CDR3 lengths and introduced amino acid substitutions to improve solubility. The validation of our library through the successful isolation of nanobodies against targets such as PD-1, ATXN1 and STAT3 demonstrates a versatile and ethical platform for the development of high specificity and affinity nanobodies and represents a significant advance in biotechnology. 
		                        		
		                        		
		                        		
		                        	
8.Construction and validation of a synthetic phage-displayed nanobody library
Minju KIM ; Xuelian BAI ; Hyewon IM ; Jisoo YANG ; Youngju KIM ; Minjoo MJ KIM ; Yeonji OH ; Yuna JEON ; Hayoung KWON ; Seunghyun LEE ; Chang-Han LEE
The Korean Journal of Physiology and Pharmacology 2024;28(5):457-467
		                        		
		                        			
		                        			 Nanobodies derived from camelids and sharks offer unique advantages in therapeutic applications due to their ability to bind to epitopes that were previously inaccessible. Traditional methods of nanobody development face challenges such as ethical concerns and antigen toxicity. Our study presents a synthetic, phagedisplayed nanobody library using trinucleotide-directed mutagenesis technology, which allows precise amino acid composition in complementarity-determining regions (CDRs), with a focus on CDR3 diversity. This approach avoids common problems such as frameshift mutations and stop codon insertions associated with other synthetic antibody library construction methods. By analyzing FDA-approved nanobodies and Protein Data Bank sequences, we designed sub-libraries with different CDR3 lengths and introduced amino acid substitutions to improve solubility. The validation of our library through the successful isolation of nanobodies against targets such as PD-1, ATXN1 and STAT3 demonstrates a versatile and ethical platform for the development of high specificity and affinity nanobodies and represents a significant advance in biotechnology. 
		                        		
		                        		
		                        		
		                        	
9.Mrakia terrae sp. nov. and Mrakia soli sp. nov., Two Novel Basidiomycetous Yeast Species Isolated from Soil in Korea
Yuna PARK ; Soohyun MAENG ; Junsang OH ; Gi-Ho SUNG ; Sathiyaraj SRINIVASAN
Mycobiology 2021;49(5):469-475
		                        		
		                        			
		                        			 Three strains, YP416 T , YP421 T, and Y422, were isolated from soil samples in Pocheon City, Gyeonggi province, South Korea. The strains belong to two novel yeast species in the genus Mrakia. Molecular phylogenetic analysis showed that the strain YP416 T was closely related to Mrakia niccombsii. Still, it differed by 9 nucleotide substitutions with no gap (1.51%) in the D1/D2 domain of the LSU rRNA gene and 14 nucleotide substitutions with 7 gaps (2.36%) in the ITS region. The strain YP421 T differed from the type strain of the most closely related species, Mrakia aquatica, by 5 nucleotide substitutions with no gap (0.81%) in the D1/D2 domain of the LSU rRNA gene and 9 nucleotide substitutions with one gap (1.43%) in the ITS region. The names Mrakia terrae sp. nov. and Mrakia soli  sp. nov. are proposed, with type strains YP416 T (KCTC 27886 T ) and YP421 T (KCTC 27890 T ), respectively. MycoBank numbers of the strains YP416 T and YP421 T are MB 836844 and MB 836847, respectively. 
		                        		
		                        		
		                        		
		                        	
10.Prevalence of Spirometrically-defined Restrictive Ventilatory Defect in Korea: The Fourth-2, 3, and Fifth Korean National Health and Nutrition Examination Survey, 2008-2012.
Jung Yeon LEE ; Yong Il HWANG ; Yong Bum PARK ; Jae Yong PARK ; Ki Uk KIM ; Yeon Mok OH ; Hyoung Kyu YOON ; Ho Il YOON ; Sueng Su SHEEN ; Sang Yeub LEE ; Chang Hoon LEE ; Heung Bum LEE ; Sung Chul LIM ; Sung Soo JUNG ; Kyungwon OH ; Yuna KIM ; Chaemin CHUN ; Kwang Ha YOO
Journal of Korean Medical Science 2015;30(6):725-732
		                        		
		                        			
		                        			The aim of the study was to evaluate the prevalence of restrictive ventilatory defect and to determine the risk factors in subjects with spirometrically-defined restrictive ventilatory defect. We used the population-based, fourth-2, 3 (2008, 2009) and fifth (2010-2012) Korea National Health and Nutrition Examination Survey (KNHANES) to analyze 15,073 subjects, aged > or =40 yr who underwent spirometry. Chest radiographs were also analyzed to identify restrictive lung disease. Spirometrically-defined restrictive ventilatory defect (FEV1/FVC> or =70% and FVC<80% of mean predicted value) was detected in 11.3% (n= 1,709) of subjects aged > or =40 yr. The prevalence increased to 12.3% on using the lower limit of normal (LLN) criteria. Approximately 99.4% of subjects were classified as mild restrictive. Among these, 11.3% had inactive tuberculosis (TB) lesion, 2.2% cardiac disease, 2.0% previous operation scar or radiation injury and/or mediastinal disease, and 7.4% other pulmonary disease suggestive of restrictive lung diseases on chest radiograph. Evidence of previous TB history was independently associated with restrictive ventilatory defect (odds ratios [OR], 1.78; 95% confidence interval, 1.45-2.18) after adjustment for gender, age, smoking, area for residence and body mass index. The prevalence of restrictive ventilatory defect among the nationwide population in Korea was 11.3% with fixed ratio criterion and 12.3% with LLN criterion. Most cases were of the mild restrictive category and previous TB history is the independent risk factor for restrictive ventilatory defect.
		                        		
		                        		
		                        		
		                        			Adult
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		                        			Age Distribution
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		                        			Aged
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		                        			Aged, 80 and over
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		                        			Educational Status
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		                        			Female
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		                        			Health Care Surveys
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		                        			Housing
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		                        			Humans
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		                        			Income
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		                        			Lung Diseases, Obstructive/*diagnosis/*epidemiology
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		                        			Male
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		                        			Middle Aged
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		                        			Prevalence
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		                        			Reproducibility of Results
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		                        			Republic of Korea/epidemiology
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		                        			Risk Factors
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		                        			Sensitivity and Specificity
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		                        			Sex Distribution
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		                        			Smoking/*epidemiology
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		                        			Spirometry/*statistics & numerical data
		                        			
		                        		
		                        	
            
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