1.Application of new generation high-throughput RNA sequencing in quality control of live attenuated yellow fever vaccine(chicken embryo cell) virus seed bank
Chinese Journal of Biologicals 2023;36(11):1335-1340
Objective To perform quality control in live attenuated yellow fever vaccine(chicken embryo cell)virus seed bank at the genomic level using the new generation Illumina/Solexa sequencing platform.Methods The live attenuated yellow fever vaccine strain YF17D-204 was inoculated into primary chicken embryo cells,and the chicken embryo cell adapted strains of live attenuated yellow fever vaccine were screened to establish YFV17D-CEC tertiary virus seed bank. The genome RNA of virus seeds was extracted,and the RNA library was prepared. The new generation Illumina/Solexa sequencing platform was used for high-throughput RNA sequencing. The whole genome nucleic acid sequence of yellow fever virus was systematically analyzed by using biological softwares such as FastQC,Trimmomatic,SPAdes,GapFiller,PrInSeS-G,Prokka,RepeatMasker,CRT,NCBI Blast~+,KAAS,HMMER3,TMHMM,SignalP,LipoP,ProtCamp and MegAlign.Results The whole genome of YFV17D-CEC tertiary virus seed bank contained 10 862 nucleotides,including an open reading frame(ORF)from 119 to 10 354(10 236 bp),encoding 3 412 amino acids. Sequence alignment analysis showed that the sequence of YF17D-CEC tertiary virus seed bank was 100% identical with YFV17D RKI(JN628279.1),YF/Vaccine/USA/Sanofi-Pasteur-17D-204/UF795AA/YFVax(JX503529.1)and YFV17D-204(KF769015.1),and no mutation occurred in the whole genome of the tertiary virus seed bank. Comparison of the sequences of different live attenuated yellow fever vaccine strains showed that yellow fever virus had multiple polymorphic sites.Conclusion YFV17DCEC has good genetic stability in primary chicken embryo cells. High-throughput RNA sequencing technology can quickly detect the whole genome information of YF17D-CEC virus seed bank,and the sequence analysis data can be used in the gene level quality control of yellow fever vaccine virus seed banks.
High-throughput RNA sequencing
;
Live attenuated yellow fever vaccine
;
Gene expression
;
Virus seed bank
;
Quality control
2.Development and Clinical Evaluation of a Rapid Diagnostic Test for Yellow Fever Non-Structural Protein 1
Yeong Hoon KIM ; Tae Yun KIM ; Ji Seon PARK ; Jin Suk PARK ; Jihoo LEE ; Joungdae MOON ; Chom Kyu CHONG ; Ivan Neves JUNIOR ; Fernando Raphael FERRY ; Hye Jin AHN ; Lokraj BHATT ; Ho Woo NAM
The Korean Journal of Parasitology 2019;57(3):283-290
A rapid diagnostic test (RDT) kit was developed to detect non-structural protein 1 (NS1) of yellow fever virus (YFV) using monoclonal antibody. NS1 protein was purified from the cultured YFV and used to immunize mice. Monoclonal antibody to NS1 was selected and conjugated with colloidal gold to produce the YFV NS1 RDT kit. The YFV RDTs were evaluated for sensitivity and specificity using positive and negative samples of monkeys from Brazil and negative human blood samples from Korea. Among monoclonal antibodies, clones 3A11 and 3B7 proved most sensitive, and used for YFV RDT kit. Diagnostic accuracy of YFV RDT was fairly high; Sensitivity was 0.0% and specificity was 100% against Dengue viruses type 2 and 3, Zika, Chikungunya and Mayaro viruses. This YFV RDT kit could be employed as a test of choice for point-of-care diagnosis and large scale surveys of YFV infection under clinical or field conditions in endemic areas and on the globe.
Animals
;
Antibodies, Monoclonal
;
Brazil
;
Clone Cells
;
Dengue Virus
;
Diagnosis
;
Diagnostic Tests, Routine
;
Gold Colloid
;
Haplorhini
;
Humans
;
Korea
;
Mice
;
Point-of-Care Systems
;
Sensitivity and Specificity
;
Yellow fever virus
;
Yellow Fever
3.Determinants of Compliance of Travelers with Vaccination and Malaria Prophylaxis at a Travel Clinic
Hea Yoon KWON ; HyeJin LEE ; Jae Hyoung IM ; Shin Goo PARK ; Yeon Ji LEE ; Ji Hyeon BAEK ; Jin Soo LEE
Journal of Korean Medical Science 2019;34(33):e217-
BACKGROUND: Pre-travel medical consultation is essential to reduce health impairment during travel. Yellow fever vaccination (YFV) is mandatory to enter some endemic countries. In this study, we evaluated the factors that affect compliance with appropriate prevention of infectious diseases in travelers who visited clinic for YFV. METHODS: For this retrospective study, chart reviews for 658 patients who visited a travel clinic for YFV before travel were conducted. The period of this study was from January 2016 to September 2018. The associations between appropriate vaccination and factors such as travel duration, destination, time of visiting clinic before departure, and purpose of travel were analyzed. RESULTS: Among 658 patients who got YFV during the study period, 344 patients (52.3%) received additional vaccination or malaria prophylaxis following a physician's recommendation. Travelers who visited the clinic more than 21 days before departure were more compliant than those who visited 14 days or fewer before departure (odds ratio [OR], 1.90; 95% confidence interval [CI], 1.23–2.93; P = 0.004). Travelers visiting Africa were more compliant than were those traveling to South and Central America (OR, 1.97; 95% CI, 1.34–2.90; P = 0.001). Travelers in age groups of 40-49 years and over 70 years were less compliant than the 18–29 years old population (OR, 0.51; 95% CI, 0.28–0.93; P = 0.027 and OR, 0.19; 95% CI, 0.04–0.84; P = 0.03, respectively). Also, those who traveled for tour or to visit friends or relatives were more compliant than those who departed for business (OR, 0.77; 95% CI, 1.03–3.56; P = 0.04). CONCLUSION: For appropriate vaccination, pre-travel consultation at least 3 weeks before departure is crucial. Travelers should be aware of required vaccination and malaria prophylaxis before visiting South and Central America and Asia. Plans to enhance compliance of the elderly and business travelers should be contrived.
Africa
;
Aged
;
Asia
;
Central America
;
Commerce
;
Communicable Diseases
;
Compliance
;
Friends
;
Humans
;
Malaria
;
Patient Compliance
;
Retrospective Studies
;
Travel Medicine
;
Vaccination
;
Yellow Fever
;
Yellow Fever Vaccine
4.Production and Storage of Virus Simulants.
In Sun SHIN ; Doyeong KIM ; Sung Jun YANG ; Byoung Chul LIM ; Younggil CHA ; Seongjoo KIM ; Tae Ju CHO
Journal of Bacteriology and Virology 2018;48(2):37-48
We have examined isolation and identification protocols for three virus simulant candidates to biological warfare agents. MS2 phage, a simulant for yellow fever virus and Hantaan virus, was propagated using as a host an E. coli strain with F pilus. MS2 phage genome was examined by reverse transcription and polymerase chain reaction (RT-PCR). Coat protein of the phage preparation was examined by SDS-polyacrylamide gel electrophoresis (SDS-PAGE) and mass spectrometric analysis. Cydia pomonella granulosis virus (CpGV) is a virus simulant candidate to smallpox virus. CpGV was isolated from a commercialized CpGV pellet. In this study, we developed new isolation and identification protocols for CpGV. One disadvantage of using CpGV is that it is not easy to determine viability of the virus. Here, we have included T4 phage as an alternative. We established a high titer production protocol and developed an easy genome identification protocol that does not require purified phage DNA. Stability of these virus preparations was also examined under various storage conditions. When the virus preparations were not subjected to freeze drying, MS2 phage was most stable when it was stored in liquid nitrogen but unstable at 4℃. In contrast, T4 phage was most stable when it was stored at 4℃. CpGV was stable at −20℃ but not at 4℃. Stability during or after freeze drying was also investigated. The result showed that 70~80% MS2 survived the freeze drying process. In contrast, only about 15% of T4 phage survived during the freeze drying. CpGV was found to be degraded during freeze drying.
Bacteriophage T4
;
Bacteriophages
;
Biological Warfare Agents
;
DNA
;
Electrophoresis
;
Freeze Drying
;
Genome
;
Granulovirus
;
Hantaan virus
;
Levivirus
;
Nitrogen
;
Polymerase Chain Reaction
;
Reverse Transcription
;
Variola virus
;
Yellow fever virus
5.Development of a Rapid Diagnostic Test Kit to Detect IgG/IgM Antibody against Zika Virus Using Monoclonal Antibodies to the Envelope and Non-structural Protein 1 of the Virus
Yeong Hoon KIM ; Jihoo LEE ; Young Eun KIM ; Chom Kyu CHONG ; Yanaihara PINCHEMEL ; Francis REISDÖRFER ; Joyce Brito COELHO ; Ronaldo Ferreira DIAS ; Pan Kee BAE ; Zuinara Pereira Maia GUSMÃO ; Hye Jin AHN ; Ho Woo NAM
The Korean Journal of Parasitology 2018;56(1):61-70
We developed a Rapid Diagnostic Test (RDT) kit for detecting IgG/IgM antibodies against Zika virus (ZIKV) using monoclonal antibodies to the envelope (E) and non-structural protein 1 (NS1) of ZIKV. These proteins were produced using baculovirus expression vector with Sf9 cells. Monoclonal antibodies J2G7 to NS1 and J5E1 to E protein were selected and conjugated with colloidal gold to produce the Zika IgG/IgM RDT kit (Zika RDT). Comparisons with ELISA, plaque reduction neutralization test (PRNT), and PCR were done to investigate the analytical sensitivity of Zika RDT, which resulted in 100% identical results. Sensitivity and specificity of Zika RDT in a field test was determined using positive and negative samples from Brazil and Korea. The diagnostic accuracy of Zika RDT was fairly high; sensitivity and specificity for IgG was 99.0 and 99.3%, respectively, while for IgM it was 96.7 and 98.7%, respectively. Cross reaction with dengue virus was evaluated using anti-Dengue Mixed Titer Performance Panel (PVD201), in which the Zika RDT showed cross-reactions with DENV in 16.7% and 5.6% in IgG and IgM, respectively. Cross reactions were not observed with West Nile, yellow fever, and hepatitis C virus infected sera. Zika RDT kit is very simple to use, rapid to assay, and very sensitive, and highly specific. Therefore, it would serve as a choice of method for point-of-care diagnosis and large scale surveys of ZIKV infection under clinical or field conditions worldwide in endemic areas.
Antibodies
;
Antibodies, Monoclonal
;
Baculoviridae
;
Brazil
;
Cross Reactions
;
Dengue Virus
;
Diagnosis
;
Diagnostic Tests, Routine
;
Enzyme-Linked Immunosorbent Assay
;
Flavivirus
;
Gold Colloid
;
Hepacivirus
;
Immunoglobulin G
;
Immunoglobulin M
;
Korea
;
Methods
;
Neutralization Tests
;
Point-of-Care Systems
;
Polymerase Chain Reaction
;
Reagent Kits, Diagnostic
;
Sensitivity and Specificity
;
Sf9 Cells
;
Yellow Fever
;
Zika Virus
6.Advances in Epidemiology, Biology and Laboratory Diagnosis of Zika Virus.
Hee Jung LEE ; Young Bong KIM ; Yungoh SHIN
Journal of Bacteriology and Virology 2017;47(1):1-13
Zika virus (ZIKV) was spread to both eastward and westward from Uganda where the virus was identified approximately in 1947 by a group of arbovirus researchers. In 2015, ZIKV reached Americas with major outbreaks in Brazil. Most countries with mosquito transmitted ZIKV infection are located in tropical and subtropical areas, where ZIKV is endemic with other flaviviruses, including JEV, dengue and yellow fever virus. Approximately 40 countries in Central and South Americas and territories in South Pacific Islands and South East Asia show autochthonous ZIKV endemics. American lineage of ZIKV is known significantly to be mutated in susceptibility to host and in pathogenicity from Asian and Asian lineages approximately since 2014. Early and specific identification of ZIKV infection is very important for the effective management of patients. First of all, optimal collection of specimens for the laboratory diagnosis is required for both nucleic acid testing (NAT) and serological tests. Specimens for NAT tests and serological tests should be determined by the available laboratory resources, work-flow in each laboratory and the geographic areas of specimen collected in addition to days after showing symptoms. Testing strategy for specific differentiation among flaviviruses will vary depending on the prevalence of viruses known to be circulating in the area where the patients were exposed. NAT will be employed for the patients presenting with onset of symptoms less than 7 days. Advanced diagnostic technologies should be continuously developed for the increase of specificity and sensitivity of ZIKV diagnosis.
Americas
;
Arboviruses
;
Asian Continental Ancestry Group
;
Biology*
;
Brazil
;
Clinical Laboratory Techniques*
;
Culicidae
;
Dengue
;
Diagnosis
;
Disease Outbreaks
;
Epidemiology*
;
Far East
;
Flavivirus
;
Humans
;
Pacific Islands
;
Prevalence
;
Sensitivity and Specificity
;
Serologic Tests
;
South America
;
Uganda
;
Virulence
;
Yellow fever virus
;
Zika Virus*
7.The Medicinal Usage and Restriction of Ginseng in Britain and America, 1660–1900.
Korean Journal of Medical History 2017;26(3):503-544
This article demonstrates the medicinal usage of ginseng in the West from 1660 to 1914. Asian[Korea] ginseng was first introduced into England in the early 17th century, and North American ginseng was found in the early 18th century. Starting from the late 17th century doctors prescribed ginseng to cure many different kinds of ailments and disease such as: fatigue general lethargy, fever, torpidity, trembling in the joints, nervous disorder, laughing and crying hysteria, scurvy, spermatic vessel infection, jaundice, leprosy, dry gripes and constipation, strangury, yellow fever, dysentery, infertility and addictions of alcohol, opium and tobacco, etc. In the mid-18th century Materia Medica began to specify medicinal properties of ginseng and the patent medicines containing ginseng were widely circulated. However, starting in the late 18th century the medicinal properties of ginseng began to be disparaged and major pharmacopoeias removed ginseng from their contents. The reform of the pharmacopoeia, influenced by Linnaeus in botany and Lavoisier in chemistry, introduced nomenclature that emphasized identifying ingredients and active constituents. Western medicine at this period, however, failed to identify and to extract the active constituents of ginseng. Apart from the technical underdevelopment of the period, the medical discourses reveal that the so-called chemical experiment of ginseng were conducted with unqualified materials and without proper differentiation of various species of ginseng.
Americas*
;
Botany
;
Chemistry
;
Constipation
;
Crying
;
Dispensatories
;
Dysentery
;
England
;
Fatigue
;
Fever
;
Hysteria
;
Infertility
;
Jaundice
;
Joints
;
Leprosy
;
Lethargy
;
Materia Medica
;
Nonprescription Drugs
;
Opium
;
Panax*
;
Scurvy
;
Tobacco
;
Yellow Fever
8.Advanced understandings for Zika virus.
Journal of the Korean Medical Association 2016;59(6):443-451
Zika virus (ZIKV) is an arthropod-borne member of the genus Flavivirus, closely related to the dengue, West Nile, Japanese encephalitis, and yellow fever viruses and is transmitted by Aedes spp. mosquitoes. It has emerged explosively since 2007 to cause a series of epidemics in Micronesia, the South Pacific, and most recently the Americas. Following the first detection of ZIKV on the American continent, autochthonous ZIKV transmission has been confirmed throughout Central and South America. The unprecedented numbers of people infected during recent outbreaks in the South Pacific and the Americas may have resulted in enough ZIKV infections to notice patterns of the associated incidence of congenital microcephaly, Gillain-Barre symdrome, and acute diffuse encephalomyelitis. Here we review the history, emergence, biology, transmission, and control strategies for the ongoing outbreak through vector-centric approaches on ZIKV to date.
Aedes
;
Americas
;
Arboviruses
;
Biology
;
Culicidae
;
Dengue
;
Disease Outbreaks
;
Encephalitis, Japanese
;
Encephalomyelitis
;
Flavivirus
;
Incidence
;
Microcephaly
;
Micronesia
;
South America
;
Yellow fever virus
;
Zika Virus*
9.Zika Virus Infection.
Korean Journal of Medicine 2016;91(1):5-11
Zika virus was first isolated in from nonhuman primate in 1947. It is in the genus Flavivirus, closely related to other flavivirus like Dengue, West Nile, Yellow fever and Japanese encephalitis virus. Since 2007 epidemic in Yap island, zika virus infections had spread to the countries in Micronesia and South Pacific. In 2015, Zika virus outbreak occurred in Brazil and now more than 40 countries in American continents reported autochthonous infection. The virus is transmitted mainly by Ae. aegypti mosquito with many other Aedes mosquito species known as vector. Recently, Zika virus infection is known to cause severe neurological complications and congenital malformation. In this paper, we will review current knowledge on Zika virus history, biology, clinical characteristics and preventive method.
Aedes
;
Biology
;
Brazil
;
Culicidae
;
Dengue
;
Encephalitis Virus, Japanese
;
Flavivirus
;
Methods
;
Microcephaly
;
Micronesia
;
Primates
;
Yellow Fever
;
Zika Virus Infection*
;
Zika Virus*
10.Travel Pattern and Prescription Analysis at a Single Travel Clinic Specialized for Yellow Fever Vaccination in South Korea.
Bum Sik CHIN ; Jae Yoon KIM ; Sara GIANELLA ; Myunghee LEE
Infection and Chemotherapy 2016;48(1):20-30
BACKGROUND: Travel-related risks for infectious diseases vary depending on travel patterns such as purpose, destination, and duration. In this study, we describe the patterns of travel and prescription of vaccines as well as malaria prophylaxis medication (MPM) at a travel clinic in South Korea to identify the gaps to fill for the optimization of pre-travel consultation. MATERIALS AND METHODS: A cohort of travel clinic visitors in 2011 was constructed and early one-third of the visitors of each month were reviewed. During the study period, 10,009 visited the travel clinic and a retrospective chart review was performed for 3,332 cases for analysis of travel patterns and prescriptions. RESULTS: People receiving yellow fever vaccine (YFV) (n = 2,933) were traveling more frequently for business and tourism and less frequently for providing non-medical service or research/education compared to the 399 people who did not receive the YFV. Overall, most people were traveling to Eastern Africa, South America, and Western Africa, while South-Eastern Asia was the most common destination for the non-YFV group. Besides YFV, the typhoid vaccine was the most commonly prescribed (54.2%), while hepatitis A presented the highest coverage (74.7%) considering the natural immunity, prior and current vaccination history. Additionally, 402 (82.5%) individuals received a prescription for MPM among the 487 individuals travelling to areas with high-risk of malaria infection. Age over 55 was independently associated with receiving MPM prescription, while purpose of providing service and travel duration over 10 days were associated with no MPM prescription, despite travelling to high-risk areas. CONCLUSION: Eastern Africa and South America were common travel destinations among the visitors to a travel clinic for YFV, and most of them were travelling for tourism and business. For the individuals who are traveling to areas with high-risk for malaria, more proactive approach might be required in case of younger age travelers, longer duration, and travel purpose of providing service to minimize the risk of malaria infection.
Africa, Eastern
;
Africa, Western
;
Antibiotic Prophylaxis
;
Asia
;
Cohort Studies
;
Commerce
;
Communicable Diseases
;
Hepatitis A
;
Immunity, Innate
;
Korea*
;
Malaria
;
Prescriptions*
;
Retrospective Studies
;
South America
;
Travel Medicine
;
Typhoid-Paratyphoid Vaccines
;
Vaccination*
;
Vaccines
;
Yellow Fever Vaccine
;
Yellow Fever*


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