1. A protective effect conferred by KIR3DL1 and its cognate ligand against cervical cancer among ethnic Han Chinese population and its potential mechanism
Jianxin ZHEN ; Leilei ZHU ; Weihong LI ; Haiyan HU ; Zhihui DENG ; Likuan XIONG
Chinese Journal of Medical Genetics 2019;36(10):1035-1038
Objective:
To explore the role of inhibitory KIR (iKIR) and its cognate HLA ligand in the occurrence and development of cervical cancer among ethnic Han Chinese and its potential mechanism.
Methods:
Peripheral blood samples from 265 Han Chinese patients with cervical intraepithelial neoplasia (CIN)/cervical cancer and 200 ethnically matched healthy controls were collected. The results of
2. Recent advances of molecular biology technology in Chlamydia trachomatis detection
Chinese Journal of Laboratory Medicine 2019;42(12):1067-1071
3.A protective effect conferred by KIR3DL1 and its cognate ligand against cervical cancer among ethnic Han Chinese population and its potential mechanism.
Jianxin ZHEN ; Leilei ZHU ; Weihong LI ; Haiyan HU ; Zhihui DENG ; Likuan XIONG
Chinese Journal of Medical Genetics 2019;36(10):1035-1038
OBJECTIVE:
To explore the role of inhibitory KIR (iKIR) and its cognate HLA ligand in the occurrence and development of cervical cancer among ethnic Han Chinese and its potential mechanism.
METHODS:
Peripheral blood samples from 265 Han Chinese patients with cervical intraepithelial neoplasia (CIN)/cervical cancer and 200 ethnically matched healthy controls were collected. The results of KIR PCR-SSP, HLA PCR-rSSO and KIR3DL1 PCR-SBT, together with cervical cancer data from the TCGA database, were used to assess the association of iKIR genes, receptor-ligand gene combinations, iKIR transcription level in the tumor tissue and the KIR3DL1 alleles with the occurrence and development of cervical cancer.
RESULTS:
Among the four iKIR genes (KIR2DL1, 2DL2/3, 3DL1 and 3DL2), the frequencies of KIR3DL1 and KIR3DL1-HLA-Bw4 genes among controls were significantly higher than those of the cervical cancer group (96.5% vs. 87.0%, P = 0.018; 81.5% vs. 64.8%, P=0.009). The survival rate of cervical cancer patients with a high transcription level of KIR3DL1 in tumor tissues was significantly higher than those with a low/medium transcription level (P=0.028). The frequency of strong-inhibitory and high-expression KIR3DL1*01502 allele among the healthy population was significantly higher than that of the cervical cancer group (76.0% vs. 59.3%, P =0.015).
CONCLUSION
Combined KIR3DL1 and KIR3DL1-HLA-Bw4 can confer a protective effect against the development of cervical cancer, which may be attributed to the strong-inhibitory and high-expression allele of KIR3DL1*01502.
Alleles
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Asian Continental Ancestry Group
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China
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Ethnic Groups
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Female
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HLA-B Antigens
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genetics
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Humans
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Protective Factors
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Receptors, KIR
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Receptors, KIR3DL1
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genetics
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Uterine Cervical Neoplasms
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genetics
4.Amniotic fluid chromosome detection for 95 NIPT high-risk pregnant women
Huijuan LAN ; Congwen SHAO ; Huilin WANG ; Zehao YAN ; Shuping XIE ; Likuan XIONG
International Journal of Laboratory Medicine 2017;38(13):1749-1750,1753
Objective To analysis of the detection result of amniotic fluid chromosome which in NIPT high-risk pregnant women.Methods Amniotic fluid cells via amniotic cavity puncture were cultured and analyzed,the chromosome karyotypes were observed.Results The highest positive predictive value of NIPT was for trisomy 21(85.00%),then trisomy 18(75.00%),sex chromosome abnormalities(68.00%),other chromosome abnormalities(41.67%),trisomy 13 (25.00%).Conclusion The highest accuracy of NIPT was shown in detection of Down''s syndrome by NIPT.NIPT was screening test which is effective and noninvasive in prenatal diagnosis.Amniotic fluid Chromosomal karyotype analysis was the gold standard in the diagnosis of fetal chromosomal disease.
5.MicroRNA expression in patients with β-thalassemia major
Huijuan LAN ; Likuan XIONG ; Jing MA
International Journal of Laboratory Medicine 2017;38(8):1016-1018,1022
Objective To explore microRNA (miRNA) expression patients with β-thalassemia major.Methods MiRNA differential expression were detected in β-thalassemia major by miRNA microarray analysis and quantitative real-time PCR.Results The results of miRNA array showed that 26 differential expression miRNAs were up regulated and 30 differential expression miRNAs were down regulated.Hsa-miR-618 which expression was up regulated and hsa-miR-103a-2-5p which expression was down regulated were selected for quantitative real-time PCR detection.It was showed that the expression tendency of hsa-miR-618 and hsa-miR-103a-2-5p were consistent.So the method of miRNAs array was reliable.The target genes of 17 miRNAs which were up regulated and 24 miRNAs which were down regulated were predicted by using database software.Conclusion It is notable that the differential expression of miRNAs in patients with β-thalassemia major.It will be afforded new direction and thinking for the mechanism research and disease treatment through the further research of the miRNAs regulation pathway in β-thalassemia major.
6.Changes in lncRNAs and related genes in β-thalassemia minor and β-thalassemia major
Liu FEI ; Du XIN ; Ma DUAN ; Xiong LIKUAN
Frontiers of Medicine 2017;11(1):74-86
β-thalassemia is caused by β-globin gene mutations.However,heterogeneous phenotypes were found in individuals with same genotype,and still undescribed mechanism underlies such variation.We collected blood samples from 30 β-thalassemia major,30 β-thalassemia minor patients,and 30 matched normal controls.Human lncRNA Array v2.0 (8 × 60 K,Arraystar) was used to detect changes in long non-coding RNAs (lncRNAs) and mRNAs in three samples each from β-thalassemia major,β-thalassemia minor,and control groups.Compared with normal controls,1424 and 2045 lncRNAs were up-and downregulated,respectively,in β-thalassemia major patients,whereas 623 and 349 lncRNAs were up-and downregulated,respectively,in β-thalassemia minor patients.Compared with β-thalassemia minor group,1367 and 2356 lncRNAs were up-and downregulated,respectively,in β-thalassemia major group.We selected five lncRNAs that displayed altered expressions (DQ583499,X-inactive specific transcript (Xist),lincRNA-TPM1,MRFS16P,and lincRNA-RUNX2-2) and confirmed their expression levels in all samples using real-time polymerase chain reaction.Based on coding-non-coding gene co-expression network and gene ontology biological process analyses,several signaling pathways were associated with three common organ systems exhibiting β-thalassemia phenotypes:hematologic,skeletal,and hepatic systems.This study implicates that abnormal expression levels of lncRNAs and mRNA in β-thalassemia cases may be correlated with its various clinical phenotypes.
7.Progress in genotyping of Chlamydia trachomatis.
Chinese Medical Journal 2014;127(22):3980-3986
OBJECTIVETo review the common genotyping techniques of Chlamydia trachomatis in terms of their principles, characteristics, applications and limitations.
DATA SOURCESData used in this review were mainly from English literatures of PubMed database. The search terms were "Chlamydia trachomatis" and "genotyping". Meanwhile, data from World Health Organization were also cited.
STUDY SELECTIONOriginal articles and reviews relevant to present review's theme were selected.
RESULTSDifferent genotyping techniques were applied on different occasions according to their characteristics, especially in epidemiological studies worldwide, which pushed the study of Chlamydia trachomatis forward greatly. In addition, summaries of some epidemiological studies by genotyping were also included in this work for reference and comparison.
CONCLUSIONSA clear understanding of common genotyping techniques could be helpful to genotype C. trachomatis more appropriately and effectively. Furthermore, more studies on the association of genotypes of Chlamydia trachomatis with clinical manifestations should be performed.
Chlamydia trachomatis ; genetics ; Genotype ; Multilocus Sequence Typing ; Polymerase Chain Reaction ; Tandem Repeat Sequences ; genetics
8.Analysis of women′s genital human papillomavirus infection and genotype distribution in Shenzhen
Guangxing MAI ; Zehao YAN ; Likuan XIONG ; Kelin XIAO ; Mingyue LUO ; Yong XIA
International Journal of Laboratory Medicine 2014;(14):1878-1879
Objective To investigate the female human papillomavirus(HPV)infection situation in Baoan district,the HPV pos-itive rates in different age groups and the subtypes distribution.Methods PCR followed with reverse dot blot was performed to ex-amine 23 kinds of HPV genotypes in 2 627 female patients in our hospital from the January 2011 to December 2012.Results In 2 627 samples,the positive rate of HPV was 23.94% (629 cases),in which the infection rate of single low-risk type was 15.1%(95 cases),the main HPV genotype was HPV43 (7.79%);the infection rate of high-risk type was 55.17% (347 cases),the 3 most prevalent HPV genotypes were HPV52 (12.56%),HPV16 (9.86%)and HPV58 (7.79%).The multiple HPV infection ac-counted for 29.73% (187 cases).The HPV infection rates in different age groups were 50.0% in age 15-20 years,24.7% in age 21-30 years,20.8% in age 31-40 years,25.8% in age 41 -50 years,42.1% in age >50 years respectively,the differences had statistical significance.Conclusion The HPV infection rate is 23.94% in Bao′an district.The most prevalent HPV genotypes are HPV 52,16,58,43.Women in age 15-20 years old have a higher infection rate.
9.Comparison of real time PCR and PCRˉreverse dot blot hybridization for detection of Human papillomavirus
Kelin XIAO ; Zehao YAN ; Mingyue LUO ; Guangxing MAI ; Xi CHEN ; Likuan XIONG
International Journal of Laboratory Medicine 2014;(24):3373-3374,3376
Objective To compare real time PCR with PCR-reverse dot blot hybridization (PCR-RDB)for detecting human pap-illomavirus (HPV)infection in women.Methods A total of 109 genital specimens from women were collected in the study.All specimens were tested HPV by using real time PCR and PCR-RDB,discrepant samples were tested again by PCR-xMAP.Results The concordant rate was 83.5%(91/109)between real time PCR and PCR-RDB (kappa=0.671),the other 18 discrepant samples were retested by PCR-xMAP,7 of those were identical with real time PCR and 11 with PCR-RDB.No differences of PCR-RDB pos-itive rates were found between the high and low viral load groups (χ2 =1.476,P =0.224).Conclusion It demonstrated moderate consistency between real time PCR and PCR-RDB.The HPV positive rates of PCR-RDB were stable when the viral loads were 103-108 .
10.Evaluation of major methods of hemoglobin analysis
Chinese Journal of Laboratory Medicine 2013;36(10):950-953
Hemoglobinopathy is a kind of hereditary hematonosis caused by the disproportion among normal hemoglobins or formation of abnormal hemoglobins.Hemoglobin analysis plays an important role in screening and diagnosing hemoglobinopathy.Emerging methods have been applied continuously to hemoglobinometry since the early 20th century.Nowadays,agarose gel electrophoresis,high performance liquid chromatography and capillary electrophoresis are widely used with mass spectrometry as the latest applied method.All these methods have their own features.Appropriate combination of these methods will lead to more scientific and reliable results.

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