1.The Rapid Establishment of Human Clonal Adipose Derived Stem Cell (hADSC) Lines with Aspirated Adipose Tissue.
Soo jeong PARK ; Kyo won LEE ; Dae Seog LIM ; Suman LEE
Journal of Korean Burn Society 2011;14(2):93-96
		                        		
		                        			
		                        			PURPOSE: This study aims to establish a new strategy that provides for the rapid establishment of human clonal adipose derived stem cell (hADSC) lines with aspirated adipose tissue and to characterize newly generated hMSC lines for their cell phenotype, differentiation potential, lineage-specific gene expression. METHODS: Human adipose tissue-derived stem cells (hADSCs) were isolated from subcutaneous adipose tissue based on standard protocols. After incubation for 2 h, only the cell culture supernatant was transferred to a new dish. This process was repeated several times with 30 h incubations. RESULTS: We confirmed the difference in growth rate, however, differences were not seen in the differentiation capabilities and stemness of the each cell lines. CONCLUSION: It is necessary to establish cell lines via single cell level for application to disease specific tissue engineering.
		                        		
		                        		
		                        		
		                        			Adipose Tissue
		                        			;
		                        		
		                        			Cell Culture Techniques
		                        			;
		                        		
		                        			Cell Line
		                        			;
		                        		
		                        			Humans
		                        			;
		                        		
		                        			Phenotype
		                        			;
		                        		
		                        			Stem Cells
		                        			;
		                        		
		                        			Subcutaneous Fat
		                        			;
		                        		
		                        			Tissue Engineering
		                        			
		                        		
		                        	
2.Genetic association study of a single nucleotide polymorphism of kallikrein-related peptidase 2 with male infertility.
Clinical and Experimental Reproductive Medicine 2011;38(1):6-9
		                        		
		                        			
		                        			OBJECTIVE: To investigate a kallikrein-related peptidase 2 (KLK2) single nucleotide polymorphism (SNP) in relation to male infertility because of its role in semen processing. We investigated the genetic association of the KLK2+255G>A genotype with male infertility. METHODS: We genotyped the SNP site located in intron 1 (+255G>A, rs2664155) of KLK2 from 218 men with male infertility (cases) and 220 fertile males (controls). Pyrosequencing analysis was performed for the genotyping. RESULTS: The SNP of the KLK2 gene had a statistically significant association with male infertility (p<0.05). The odds ratio for the minor allele (+255A) in the pooled sample was 0.47 (95% confidence intervals, 0.26-0.85) for rs2664155. CONCLUSION: The relationship of KLK2 SNP to male infertility is statistically significant, especially within the non-azoospermia group. Further study is needed to understand the mechanisms associated with male infertility.
		                        		
		                        		
		                        		
		                        			Alleles
		                        			;
		                        		
		                        			Genetic Association Studies
		                        			;
		                        		
		                        			Genotype
		                        			;
		                        		
		                        			Humans
		                        			;
		                        		
		                        			Infertility, Male
		                        			;
		                        		
		                        			Introns
		                        			;
		                        		
		                        			Male
		                        			;
		                        		
		                        			Odds Ratio
		                        			;
		                        		
		                        			Polymorphism, Single Nucleotide
		                        			;
		                        		
		                        			Semen
		                        			
		                        		
		                        	
3.Single Nucleotide Polymorphism in the Promoter Region of H1 Histone Family Member N, Testis-specific (H1FNT) and Its Association Study with Male Infertility.
Seung Hee YANG ; Jinu LEE ; Suman LEE
Genomics & Informatics 2010;8(4):201-205
		                        		
		                        			
		                        			The H1 histone family, member N, testis-specific (H1FNT) is exclusively expressed in the testis, and had its possible role for sperm chromatin formation. The purpose of this study is to investigate any genetic association of H1FNT gene with male infertility, especially at the promoter region. We examined the promoter single nucleotide polymorphisms (SNP) of H1FNT gene which is located within transcription factor binding site for its association with male infertility. The statistical analysis showed that the -1129A>T polymorphism was present at a statistically significance in male infertility (p=0.0059 and 0.0349 for hetero and risk type, respectively). The dual-luciferase promoter assay was performed to examine the polymorphic effect of this promoter SNP by the cloning of promoter region (1700bp fragment) into pGL3-basic vector. In our plasmid based reporter system, there is no big difference between wild and risk type. In conclusion, H1FNT -1129A>T promoter SNP is statistically significant with male infertility, especially with subfertile (non-azoospermia) group. Further analysis of its functional polymorphic effect in vivo may provide the biological significance of testis-specific histone with spermatogenesis.
		                        		
		                        		
		                        		
		                        			Binding Sites
		                        			;
		                        		
		                        			Chromatin
		                        			;
		                        		
		                        			Clone Cells
		                        			;
		                        		
		                        			Cloning, Organism
		                        			;
		                        		
		                        			Histones
		                        			;
		                        		
		                        			Humans
		                        			;
		                        		
		                        			Infertility, Male
		                        			;
		                        		
		                        			Male
		                        			;
		                        		
		                        			Plasmids
		                        			;
		                        		
		                        			Polymorphism, Single Nucleotide
		                        			;
		                        		
		                        			Promoter Regions, Genetic
		                        			;
		                        		
		                        			Spermatogenesis
		                        			;
		                        		
		                        			Spermatozoa
		                        			;
		                        		
		                        			Testis
		                        			;
		                        		
		                        			Transcription Factors
		                        			
		                        		
		                        	
4.The Associtation between Methylenetetrahydrofolate Reductase Gene Polymorphisms and a Risk of Spontaneously Aborted Embryos.
Nick Beom JEON ; Seung Il JI ; Seung Joo SHIN ; Sun Hee CHA ; Dong Hee CHOI ; Dong Jin YIM ; Sang Hee PARK ; Suman LEE ; Sang Hwa LEE ; Jung Jae KO ; Nam Keun KIM
Korean Journal of Fertility and Sterility 2006;33(1):61-68
		                        		
		                        			
		                        			OBJECTIVE: This study was performed to understand the influence of the methylenetetrahydrofolate reductase (MTHFR C677T and A1298C) genotypes on the spontaneously aborted embryos. METHODS: DNA was extracted from tissue samples of 95 spontaneously aborted embryos and 100 samples of normal children randomly and 449 samples of normal adults were selected as the controls. MTHFR genotypes were determined by a polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) assay. RESULTS: The aborted embryo group had higher frequency of MTHFR 677CC type (p=0.014) and lower 677CT type (p=0.063) than the controlled child group. The frequency of MTHFR 677CT type was drastically lower than that of controlled adult group (p=0.032). In the MTHFR C677T/A1298C combination, 677CC/1298AC genotype of the aborted embryo was significantly higher (p=0.034) than that of controlled child group, but it was not statistically significant in controlled adult group (p=0.063). CONCLUSION: MTHFR 677CC and MTHFR 677CC/1298AC genotypes may represent genetic markers for the risk of spontaneously aborted embryos at least in Koreans.
		                        		
		                        		
		                        		
		                        			Aborted Fetus*
		                        			;
		                        		
		                        			Adult
		                        			;
		                        		
		                        			Child
		                        			;
		                        		
		                        			DNA
		                        			;
		                        		
		                        			Genetic Markers
		                        			;
		                        		
		                        			Genotype
		                        			;
		                        		
		                        			Homocysteine
		                        			;
		                        		
		                        			Humans
		                        			;
		                        		
		                        			Methylenetetrahydrofolate Reductase (NADPH2)*
		                        			
		                        		
		                        	
5.X-linked Gene Expression Profiles by RNAi-Mediated BRCA1 Knockdown in MCF7 Cells.
Min Ae SONG ; Jung Hoon PARK ; Hee Jeong AHN ; Jung Jae KO ; Suman LEE
Genomics & Informatics 2005;3(4):154-158
		                        		
		                        			
		                        			Germ-line mutations of the BRCA1 gene confer an increased risk for breast and ovarian cancers. BRCA1 in female cells is directly related with the maintenance of the inactive X chromosome (Xi). The effect by the loss of the BRCA1 function on the X chromosome gene expression remains unclear in cancer cells. We attempted to investigate the expression pattern of the X-linked genes by performing BRCA1 knockdown via RNA interference in the MCF 7 breast cancer cell line. The transcriptional and translational levels of BRCA1 were decreased over 95% in the MCF 7 cells after BRCA1 knockdown. The expression patterns of one hundred ninety X-linked genes were profiled by the X chromosome-specific cDNA arrays. A total of seven percent of the X-linked genes (14/190) were aberrantly expressed by over 2-fold in the MCF7-BRCA1 knockdown cells, which contained two up-regulated genes (2/190, 1%) and 12 downregulated genes (12/190, 6.3%). It is interesting that 72% of the aberrantly expressed X-linked genes were located on the Xq (10/14,) region. Our data suggests that BRCA1 may not be important to maintain X chromosome inactivation in cancer because the BRCA1 knockdown did increase the expression of the only one percent of X-linked genes in the human breast cancer cells.
		                        		
		                        		
		                        		
		                        			Breast
		                        			;
		                        		
		                        			Breast Neoplasms
		                        			;
		                        		
		                        			Cell Line
		                        			;
		                        		
		                        			Female
		                        			;
		                        		
		                        			Gene Expression
		                        			;
		                        		
		                        			Genes, BRCA1
		                        			;
		                        		
		                        			Genes, X-Linked*
		                        			;
		                        		
		                        			Germ-Line Mutation
		                        			;
		                        		
		                        			Humans
		                        			;
		                        		
		                        			MCF-7 Cells*
		                        			;
		                        		
		                        			Oligonucleotide Array Sequence Analysis
		                        			;
		                        		
		                        			Ovarian Neoplasms
		                        			;
		                        		
		                        			RNA Interference
		                        			;
		                        		
		                        			X Chromosome
		                        			;
		                        		
		                        			X Chromosome Inactivation
		                        			
		                        		
		                        	
6.Identification of New Proteins in Follicular Fluid from Mature Human Follicles by Direct Sample Rehydration Method of Two-Dimensional Polyacrylamide Gel Electrophoresis.
Han Chul LEE ; Sang Wha LEE ; Kyo Won LEE ; Sook Whan LEE ; Kwang Yul CHA ; Kye Hyun KIM ; Suman LEE
Journal of Korean Medical Science 2005;20(3):456-460
		                        		
		                        			
		                        			Human follicular fluid (HFF) includes various biologically active proteins which can affect follicle growth and oocyte fertilization. Thus far, these proteins from mature follicles in human follicular fluid have been poorly characterized. Here, two-dimensional polyacrylamide gel electrophoresis (2-DE) with matrix-assisted laser desorption/ionization-mass spectrometry (MALDI-MS) was used to identify new proteins in HFF. Mature follicular fluids were obtained from five females after oocyte collection during in vitro fertilization (IVF). We directly rehydrated HFF samples, obtained high-resolution 2-DE maps, and processed them for 2-DE and MALDI-MS. One hundred eighty spots were detected and 10 of these spots were identified. By the 2-DE database, six of them had been reported, as proteins already existing in HFF. Hormone sensitive lipase (HSL), Unnamed protein product 1 (UPP1), Unnamed protein product 2 (UPP2), and apolipoprotein A-IV precursor were newly detected. HSL and apolipoprotein A-IV participate in lipid metabolism. UPP1 has a homology with selenocysteine lyase. We found by RT-PCR that these genes are expressed from human primary granulosa cells. The proteins identified here may emerge as potential candidates for specific functions during folliculogenesis, hormone secretion regulation, or oocyte maturation. Further functional analysis of these proteins is necessitated to determine their biological implications.
		                        		
		                        		
		                        		
		                        			Adult
		                        			;
		                        		
		                        			Electrophoresis, Gel, Two-Dimensional/*methods
		                        			;
		                        		
		                        			Female
		                        			;
		                        		
		                        			Follicular Fluid/*chemistry/metabolism
		                        			;
		                        		
		                        			Gene Expression
		                        			;
		                        		
		                        			Granulosa Cells/metabolism
		                        			;
		                        		
		                        			Humans
		                        			;
		                        		
		                        			Ovarian Follicle/*chemistry/metabolism
		                        			;
		                        		
		                        			Proteins/*analysis/genetics
		                        			;
		                        		
		                        			RNA, Messenger/genetics/metabolism
		                        			;
		                        		
		                        			Research Support, Non-U.S. Gov't
		                        			;
		                        		
		                        			Reverse Transcriptase Polymerase Chain Reaction
		                        			;
		                        		
		                        			Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
		                        			
		                        		
		                        	
7.Gene Expression Analysis of Cultured Amniotic Fluid Cell with Down Syndrome by DNA Microarray.
In Hyuk CHUNG ; Sook Hwan LEE ; Kyo Won LEE ; Sang hee PARK ; Kwang Yul CHA ; Nam Soon KIM ; Hyang Sook YOO ; Yong Sung KIM ; Suman LEE
Journal of Korean Medical Science 2005;20(1):82-87
		                        		
		                        			
		                        			Complete or partial triplication of human chromosome 21 results in Down syndrome (DS). To analyze differential gene expressions in amniotic fluid (AF) cells of DS, we used a DNA microarray system to analyze 102 genes, which included 24 genes on chromosome 21, 28 genes related to the function of brain and muscle, 36 genes related to apoptosis, 4 genes related to extracellular matrix, 8 genes related to other molecular function and 2 house-keeping genes. AF cells were collected from 12 pregnancies at 16-18 weeks of gestation in DS (n=6) and normal (n=6) subjects. Our DNA microarray experiments showed that the expressions of 11 genes were altered by at least 2-folds in DS, as follows. Ten genes, COL6A1, CASP5, AKT2, JUN, PYGM, BNIP1, OSF-2, PRSS7, COL3A1, and MBLL were down-regulated and GSTT1 was only up-regulated. The differential expressions of GSTT1 and COL3A1 were further confirmed by semi-quantitative RT-PCR for each sample. The gene dosage hypothesis on chromosome 21 may explain the neurological and other symptoms of DS. However, our results showed that only two genes (COL6A1 and PRSS7), among 24 genes on chromosome 21, were down-regulated in the AF cells of DS. Our data may provide the basis for a more systematic identification of biological markers of fetal DS, thus leading to an improved understanding of pathogenesis for fetal DS.
		                        		
		                        		
		                        		
		                        			Amniocentesis
		                        			;
		                        		
		                        			Amniotic Fluid/*cytology/*metabolism
		                        			;
		                        		
		                        			Apoptosis
		                        			;
		                        		
		                        			Cells, Cultured
		                        			;
		                        		
		                        			Chromosomes, Human, Pair 21
		                        			;
		                        		
		                        			Collagen Type III/biosynthesis
		                        			;
		                        		
		                        			DNA, Complementary/metabolism
		                        			;
		                        		
		                        			Down Syndrome/*genetics/metabolism
		                        			;
		                        		
		                        			Down-Regulation
		                        			;
		                        		
		                        			Gene Dosage
		                        			;
		                        		
		                        			Gene Expression
		                        			;
		                        		
		                        			*Gene Expression Regulation
		                        			;
		                        		
		                        			Glutathione Transferase/biosynthesis
		                        			;
		                        		
		                        			Humans
		                        			;
		                        		
		                        			Models, Genetic
		                        			;
		                        		
		                        			*Oligonucleotide Array Sequence Analysis
		                        			;
		                        		
		                        			Research Support, Non-U.S. Gov't
		                        			;
		                        		
		                        			Reverse Transcriptase Polymerase Chain Reaction
		                        			;
		                        		
		                        			Time Factors
		                        			;
		                        		
		                        			Up-Regulation
		                        			
		                        		
		                        	
8.Application of DNA chip techniques for Yq microdeletion analysis in infertile males.
Suman LEE ; Hyun Suk JOO ; Sook Hwan LEE ; Jung Eun PARK ; Jong Man KIM ; Jae Hoon HWANG ; Key Seung CHO ; Seung Yong HWANG
Experimental & Molecular Medicine 2004;36(2):179-184
		                        		
		                        			
		                        			Our aim was to apply DNA chip technology as a diagnostic tool in infertility research and clinics. Six loci, including a sex-determining region on the Y chromosome and five sequence-tagged sites in azoospermia-factor regions were investigated in infertile male patients. Our method produced a sensitive signal, which showed the presence or absence of the STS regions on the Y chromosome. The results from 93 patients with non- obstructive azoospermia, oligoathenoteratozoospermia, or oligozoospermia were identical when analyzed with either the DNA chip technique or conventional PCR-gel electrophoresis. We have demonstrated its application in the molecular diagnosis of male infertility. This system provides an economic and high-throughput method for detecting the deletion of genomic DNA sequences of large groups of infertile patients, and a completely new approach to male infertility screening. The application of DNA chip technology to identify Yq deletions can also facilitate our understanding of male infertility.
		                        		
		                        		
		                        		
		                        			Chromosome Deletion
		                        			;
		                        		
		                        			Chromosomes, Human, Y/*genetics
		                        			;
		                        		
		                        			DNA Mutational Analysis/methods
		                        			;
		                        		
		                        			Electrophoresis, Agar Gel
		                        			;
		                        		
		                        			Female
		                        			;
		                        		
		                        			Humans
		                        			;
		                        		
		                        			Infertility, Male/*diagnosis/*genetics
		                        			;
		                        		
		                        			Male
		                        			;
		                        		
		                        			Oligonucleotide Array Sequence Analysis/*methods
		                        			;
		                        		
		                        			Polymerase Chain Reaction
		                        			;
		                        		
		                        			Predictive Value of Tests
		                        			;
		                        		
		                        			Research Support, Non-U.S. Gov't
		                        			;
		                        		
		                        			Seminal Plasma Proteins/*genetics
		                        			;
		                        		
		                        			Sensitivity and Specificity
		                        			;
		                        		
		                        			Sequence Tagged Sites
		                        			;
		                        		
		                        			*Sex Chromosome Aberrations
		                        			
		                        		
		                        	
9.Contribution of Thymidylate Synthase Enhancer Region (TSER) Polymorphism to Total Plasma Homocysteine Levels in Korean Patients with Recurrent Spontaneous Abortion.
Yoon Kyung CHOI ; Myung Seo KANG ; Nam Keun KIM ; Sun Hee KIM ; Dong Hee CHOI ; Myung Ok AN ; Suman LEE
Korean Journal of Fertility and Sterility 2004;31(3):183-190
		                        		
		                        			
		                        			OBJECTIVES: Methylenetetrahydrofolate reductase (MTHFR) mutation are commonly associated with hyperhomocysteinemia, and through their defects in homocysteine metabolism, they have been implicated as a risk factor for recurrent spontaneous abortion. Recent report describe that 28-bp tandem repeat polymorphism in thymidylate synthase enhancer region (TSER) that influence enzyme activity would affect plasma homocysteine level. We have investigated the relationship between TSER genotype and plasma homocysteine level in 54 patients with recurrent spontaneous abortion. METHODS: Plasma homocysteine level was measured by fluorescent polarizing immunoassay. MTHFR mutation (C677T and A1298C) was identified by PCR-restriction fragment length polymorphism assay and TSER mutation was analyzed by PCR method. The data were analyzed using the program SAS 8.2 for Windows. RESULTS: Total homocysteine level was significantly higher in MTHFR 677TT genotype (9.80+/-3.87 mumol/L) than MTHFR 677CC genotype (8.14+/-1.74 mumol/L) in Korean patients with unexplained recurrent spontaneous abortion (p=0.0143). However, the plasma homocysteine level was not significantly different in the MTHFR 1298AA (8.42+/-2.65 mumol/L) and 1298CC (6.09+/-0.32 mumol/L; p=0.2058) and, TSER 2R2R (8.61+/-1.68 mumol/L) and 3R3R (8.05+/-2.81 mumol/L; p=0.9319) mutant genotypes, respectively. In this study, we found the combination effects of TSER and MTHFR C677T genotypes. Plasma homocysteine levels were the highest (11.47+/-4.66 mumol/L) in individuals with TSER 3R3R (8.05+/-2.81 mumol/L) and MTHFR 677TT (9.80+/-3.87 mumol/L) genotypes. Individuals with a combination of both TSER 2R2R/2R3R and MTHFR 677CC/CT genotypes (7.69+/-1.77 mumol/L) had lower plasma homocysteine levels than TSER 2R2R (8.61+/-1.68 mumol/L) and MTHR 677CC (8.14+/-1.74 mumol/L) genotypes, respectively. The effect of MTHFR polymorphism in the homocysteine metabolism appears to be stronger than that of TSER polymorphism. CONCLUSION: Although statistically not significant, we found the elevated level of plasma homocysteine in combined genotypes with TSER and MTHFR (C677T and A1298C) in Korean patients with unexplained habitual abortion. In this study, we reported the possibility that TSER polymorphism is a genetic determinant of plasma homocysteine levels in the Korean patients as well as MTHFR C677T polymorphism. A large prospective study is needed to verify our findings.
		                        		
		                        		
		                        		
		                        			Abortion, Habitual
		                        			;
		                        		
		                        			Abortion, Spontaneous*
		                        			;
		                        		
		                        			Female
		                        			;
		                        		
		                        			Genotype
		                        			;
		                        		
		                        			Homocysteine*
		                        			;
		                        		
		                        			Humans
		                        			;
		                        		
		                        			Hyperhomocysteinemia
		                        			;
		                        		
		                        			Immunoassay
		                        			;
		                        		
		                        			Metabolism
		                        			;
		                        		
		                        			Methylenetetrahydrofolate Reductase (NADPH2)
		                        			;
		                        		
		                        			Plasma*
		                        			;
		                        		
		                        			Polymerase Chain Reaction
		                        			;
		                        		
		                        			Pregnancy
		                        			;
		                        		
		                        			Risk Factors
		                        			;
		                        		
		                        			Tandem Repeat Sequences
		                        			;
		                        		
		                        			Thymidylate Synthase*
		                        			
		                        		
		                        	
10.The Study of X Chromosome Inactivation Mechanism in Klinefelter's Syndrome by cDNA Microarray Experiment.
Yu Mi JEONG ; In Hyuk CHUNG ; Jung Hoon PARK ; Sook Hwan LEE ; Tae Gyu CHUNG ; Yong Sung KIM ; Nam Soon KIM ; Hyang Sook YOO ; Suman LEE
Genomics & Informatics 2004;2(1):30-35
		                        		
		                        			
		                        			To investigate the XIST gene expression and its effect in a Klinefelter''s patient, we used Klinefelter''s syndrome (XXY) patient with azoospermia and also used a normal male (XY) and a normal female (XX) as the control, We were performed cytogenetic analysis, Y chromosomal microdeletion assay (Yq), semi-quantitative RT-PCR, and the Northern blot for Klinefelter''s syndrome (KS) patient, a female and a male control, We extracted total RNA from the KS patient, and from the normal cells of the female and male control subjects using the RNA prep kit (Qiagen), cDNA microarray contained 218 human X chromosome-specific genes was fabricated. Each total RNA was reverse transcribed to the first strand cDNA and was labeled with Cy-3 and Cy-5 fluorescein, The microarray was scanned by ScanArray 4000XL system. XIST transcripts were detected from the Klinefelters patient and the female by RT-PCR and Northern blot analysis, but not from the normal male, In the cDNA microarray experiment, we found 24 genes and 14 genes are highly expressed in KS more than the normal male and females, respectively. We concluded that highly expressed genes in KS may be a resulted of the abnormal X inactivation mechanism.
		                        		
		                        		
		                        		
		                        			Azoospermia
		                        			;
		                        		
		                        			Blotting, Northern
		                        			;
		                        		
		                        			Cytogenetic Analysis
		                        			;
		                        		
		                        			DNA, Complementary*
		                        			;
		                        		
		                        			Female
		                        			;
		                        		
		                        			Fluorescein
		                        			;
		                        		
		                        			Gene Expression
		                        			;
		                        		
		                        			Humans
		                        			;
		                        		
		                        			Klinefelter Syndrome*
		                        			;
		                        		
		                        			Male
		                        			;
		                        		
		                        			Oligonucleotide Array Sequence Analysis*
		                        			;
		                        		
		                        			RNA
		                        			;
		                        		
		                        			X Chromosome Inactivation*
		                        			;
		                        		
		                        			X Chromosome*
		                        			
		                        		
		                        	
            
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