1.Traceability of Geographic Origin Using Human Skin and Oral Microbiota.
Xin-Yu DONG ; Ru-Xin ZHU ; Yin-Lei LEI ; Rui-Yang TAO ; Cheng-Tao LI
Journal of Forensic Medicine 2023;39(6):557-563
OBJECTIVES:
To explore the possibility of using human skin and oral microorganisms to estimate the geographic origin of an individual through the sequencing analysis of bacterial 16S rRNA gene.
METHODS:
Microbial DNA was extracted from the palm and oral microorganisms of the Han population in Shanghai and Chifeng, Inner Mongolia, and the composition and diversity of the microbiota were analyzed by full-length 16S rRNA gene sequencing. Then, differential species were screened and a geographic location prediction model was constructed.
RESULTS:
The compositions of palm and oral microorganisms between Shanghai and Chifeng samples were both different. The abundance and uniformity of palm side skin microorganisms were higher in Chifeng samples than in Shanghai samples, while there was no significant difference in oral microorganisms. Permutational multivariate analysis of variance (PERMANOVA) confirmed that the β-diversity between the samples from the two places were statistically significant, and the coefficients of determination (R2) for skin and oral samples were 0.129 and 0.102, respectively. Through principal co-ordinates analysis (PCoA), the samples from the two places could be preliminarily distinguished. The predictive model had the accuracies of 0.90 and 0.83 for the geographic origin using the skin and oral samples, respectively.
CONCLUSIONS
There are differences in the compositions of palm and oral microbiota between Han populations in Shanghai and Chifeng. The prediction model constructed by the random forest algorithm can trace the unknown individuals from the above two places.
Humans
;
China
;
DNA, Bacterial/genetics*
;
Microbiota/genetics*
;
RNA, Ribosomal, 16S/genetics*
;
Skin/microbiology*
;
Forensic Genetics
;
High-Throughput Nucleotide Sequencing
;
Mouth/microbiology*
2.Expression of MHCⅠ genes in different tissues of Rana dybowskii under the stress of Aeromonas hydrophila.
Ruofei BIAN ; Xiao XU ; Yufen LIU ; Peng LIU ; Wenge ZHAO
Chinese Journal of Biotechnology 2020;36(7):1323-1333
The aim of this study was to investigate the expression of MHCⅠ gene in different tissues of Rana dybowskii under the stress of Aeromonas hydrophila (Ah), and to provide evidence for revealing the anti-infective immune response mechanism of amphibians. The experimental animal model of Aeromonas hydrophila infection was first constructed, and the pathological changes were observed by HE staining. The MHCⅠ gene α1+α2 peptide binding region of Rana dybowskii was cloned by RT-PCR and analyzed by bioinformatics. Real-time PCR was used to detect the transcription level of MHCⅠ in different tissues under Ah stress. After Ah infection, the skin, liver and muscle tissues showed signs of cell structure disappearance and texture disorder. The MHCⅠ gene α1+α2 peptide binding region fragment was 494 bp, encoding 164 amino acids, and homology with amphibians. Above 77%, the homology with mammals was as low as 14.96%, indicating that the α1+α2 region of MHC gene was less conserved among different species. The results of real-time PCR show that the liver, spleen and kidney of the experimental group were under Ah stress. The transcript levels of MHCⅠ gene in skin and muscle tissues were higher than those in the control group at 72 h, but the time to peak of each tissue was different (P<0.01), indicating that the response time of MHCⅠ gene in different tissues was different under Ah stress. This study provides a reference for further exploring the immune function of MHC molecules in anti-infection.
Aeromonas hydrophila
;
Animals
;
Gene Expression Profiling
;
Gene Expression Regulation
;
immunology
;
Gram-Negative Bacterial Infections
;
immunology
;
Liver
;
metabolism
;
Ranidae
;
genetics
;
immunology
;
microbiology
;
Skin
;
metabolism
3.Drug-induced toxic epidermal necrolysis with secondary aspergillus fumigatus infection: a case report.
Si ZHANG ; Xiao Yang LIU ; Jian Zhong ZHANG ; Lin CAI ; Cheng ZHOU
Journal of Peking University(Health Sciences) 2019;51(5):977-980
Among the various drug induced dermatological entities toxic epidermalnecrolysis (TEN) and Stevens-Johnson syndrome (SJS) occupy a primary place in terms of mortality. Toxic epidermal necrolysis also known as Lyell's syndrome was first described by Lyell in 1956. Drugs are by far the most common cause of toxic epidermal necrolysis, in which large sheets of skin are lost from the body surface making redundant the barrier function of the skin, with its resultant complications. Drug-induced toxic epidermal necrolysis are severe adverse cutaneous drug reactions to various precipitating agents that predominantly involve the skin and mucous membranes. Toxic epidermal necrolysis is rare but considered medical emergencies as they are potentially fatal. Drugs are the most common cause accounting for about 65%-80% of the cases. The most common offending agents are sulfonamides, NSAIDs, butazones and hydrantoins. An immune mechanism is implicated in the pathogenesis, but its nature is still unclear. There is a prodormal phase in which there is burning sensation all over the skin and conjunctivae, along with skin tenderness, fever, malaise and arthralgias. Early sites of cutaneous involvement are the presternal region of the trunk and the face, but also the palms and soles, rapidly spread to their maximum extent, the oral mucosa and conjunctiva being affected. Initial lesions are macular, followed by desquamateion, or may be from atypical targets with purpuriccenters that coalesce, from bullae, then slough. The earlier a causative agent is withdrawn the better is the prognosis. Several treatment modalities given in addition to supportive care are reported in the literature, such as systemicsteroids, high-dose intravenous immunoglobulins, ciclosporin, TNF antagonists. Recovery is slow over a period of 14-28 days and relapses are frequent. Mortality is 25%-50% and half the deaths occur due to secondary infection. Here we report a 50-year-old female of drug-induced toxic epidermal necrolysis. She was admitted to the dermatology ward with extensive peeling of skin over the trunk and limbs. She had taken alamotrigine for epilepsy. A week after taking the tablets, the patient developed a severe burning sensation all over the body and followed by a polymorphic erythematous dermatitis and widespread peeling of skin. We treated this patient with high dose corticosteroids, high-dose intravenous immunoglobulins and etanercept, but eventually she died of secondary aspergillus fumigatus infection.
Adrenal Cortex Hormones
;
Aspergillosis/diagnosis*
;
Aspergillus fumigatus
;
Cyclosporine
;
Female
;
Humans
;
Middle Aged
;
Skin
;
Stevens-Johnson Syndrome/microbiology*
4.Early clinical manifestations of vibrio necrotising fasciitis.
Thean Howe Bryan KOH ; Jiong Hao Jonathan TAN ; Choon-Chiet HONG ; Wilson WANG ; Aziz NATHER
Singapore medical journal 2018;59(4):224-227
We present five patients with vibrio necrotising fasciitis, a lethal and disabling disease. Two of these patients had a history of exposure to either warm seawater or raw/live seafood, three had underlying chronic liver disease, and four presented with hypotension and fever. There were three deaths and four patients required intensive care unit stays. Among the two survivors, one had high morbidity. Only one patient met the criteria of Laboratory Risk Indicator for Necrotising Fasciitis score > 6. A clinician should suspect possible vibrio necrotising fasciitis if the following are present: contact with fresh seafood/warm seawater, a known history of chronic liver disease and pain that is out of proportion to cutaneous signs. All patients must be managed via intensive care in high dependency units. We recommend a two-step surgical protocol for patient management involving an initial local debridement, followed by a second-stage radical debridement and skin grafting.
Aged
;
Aged, 80 and over
;
Debridement
;
End Stage Liver Disease
;
complications
;
Fasciitis, Necrotizing
;
diagnosis
;
microbiology
;
surgery
;
Female
;
Fever
;
complications
;
Hepatitis B
;
complications
;
Humans
;
Hypotension
;
complications
;
Male
;
Middle Aged
;
Retrospective Studies
;
Risk Factors
;
Seafood
;
Seawater
;
Severity of Illness Index
;
Singapore
;
Skin Transplantation
;
Vibrio
;
Vibrio Infections
;
diagnosis
;
surgery
5.Prevention of infectious diseases through microecology modulation techniques.
Hui WANG ; Di KANG ; Xue-Dong ZHOU ; Yu-Qing LI
West China Journal of Stomatology 2018;36(5):564-567
The microbe is small in volume, but large in quantity and species. The symbiotic microbe, which is far more than human cells, code millions times of genes than human being. Somatic cells and these symbiotic microbe distributing in human body skin, respiratory tract, oral cavity and gastrointestinal tract, urinary tract and other parts form a complex ecosystem whose dynamic balance is highly related to body health. With the successful implementation of Human Microbiome Project, more attentions have been paid to the next generation microbiome technologies. New tools and methods for ecological regulation of human microbiome are emerging. The way we improve the world of human microbiology will be more convenient. This paper will make a review on the modulation techniques of human microbiome.
Humans
;
Microbiota
;
Mouth
;
microbiology
;
Skin
;
microbiology
6.Prevention and treatment strategy for burn wound sepsis in children.
Chinese Journal of Burns 2016;32(2):71-73
Wound sepsis is one of the main causes of death in patients with severe burn and trauma. The high incidence of burn wound sepsis in children is attributed to their imperfect immune system function, poor resistance against infection, and the weakened skin barrier function after burn. The key to reduce the mortality of pediatric patients with burn wound sepsis is to enhance the understanding of its etiology, epidemiology, pathogenesis, and diagnostic criteria, in order to improve its early diagnosis and treatment.
Burns
;
complications
;
prevention & control
;
therapy
;
Child
;
Humans
;
Sepsis
;
diagnosis
;
etiology
;
mortality
;
therapy
;
Skin
;
microbiology
;
pathology
;
Survival Rate
;
Wound Infection
;
mortality
;
prevention & control
;
therapy
7.Molecular Epidemiology of Staphylococcus aureus among Patients with Skin and Soft Tissue Infections in Two Chinese Hospitals.
Fei-Fei GU ; Ye CHEN ; De-Ping DONG ; Zhen SONG ; Xiao-Kui GUO ; Yu-Xing NI ; Li-Zhong HAN
Chinese Medical Journal 2016;129(19):2319-2324
BACKGROUNDStaphylococcus aureus is one of the predominant causes of skin and soft tissue infections (SSTIs), but limited data were available regarding the characterization of S. aureus from SSTIs patients in Jiangsu Province in China. We aimed to investigate the molecular epidemiology of S. aureus among SSTIs patients in two hospitals of Jiangsu Province.
METHODSSixty-two patients with SSTIs from two Chinese hospitals in Jiangsu Province were enrolled in this study, and 62 S. aureus isolates were collected from February 2014 to January 2015. S. aureus isolates were characterized by antimicrobial susceptibility testing, toxin gene detection, and molecular typing with sequence type, Staphylococcus protein A gene type, accessory gene regulator (agr) group, and Staphylococcal cassette chromosome mec t ype.
RESULTSSixteen (25.8%) methicillin-resistant S. aureus (MRSA) isolates were detected, and there was no isolate found resistant to vancomycin, teicoplanin, sulfamethoxazole-trimethoprim, and linezolid. The sei was the toxin gene most frequently found, and no lukS/F-PV-positive isolates were detected among the SSTIs' patients. Molecular analysis revealed that ST398 (10/62, 16.1%; 2 MRSA and 8 methicillin-susceptible S. aureus) to be the dominant clone, followed by ST5 (8/62, 12.9%) and ST7 (8/62, 12.9%).
CONCLUSIONSThe livestock ST398 was the most common clone among patients with S. aureus SSTIs in Jiangsu Province, China. Surveillance and further studies on the important livestock ST398 clone in human infections are necessarily requested.
Adolescent ; Adult ; Aged ; Aged, 80 and over ; Anti-Bacterial Agents ; pharmacology ; Child ; Child, Preschool ; China ; Female ; Hospitals ; Humans ; Infant ; Linezolid ; pharmacology ; Male ; Methicillin-Resistant Staphylococcus aureus ; drug effects ; isolation & purification ; Microbial Sensitivity Tests ; Middle Aged ; Molecular Epidemiology ; Soft Tissue Infections ; microbiology ; Staphylococcal Infections ; microbiology ; Staphylococcal Skin Infections ; microbiology ; Staphylococcus aureus ; drug effects ; isolation & purification ; Teicoplanin ; pharmacology ; Trimethoprim, Sulfamethoxazole Drug Combination ; pharmacology ; Vancomycin ; pharmacology ; Young Adult
8.Demographic and clinical characteristics and risk factors for Staphylococcal scalded skin syndrome in Hunan.
Juan SU ; Ji LI ; Haiyan LUO ; Zhenghui XIAO ; Binping LUO ; Xiang CHEN ; Jie LI ; Panpan LIU ; Wu ZHU
Journal of Central South University(Medical Sciences) 2016;41(4):417-421
OBJECTIVE:
To realize the risk factors, clinical features, and treatments of Staphylococcal scalded skin syndrome (SSSS).
METHODS:
The clinical features, laboratory findings, and treatment were retrospectively analyzed in 290 patients from Hunan Children's Hospital.
RESULTS:
Of the 290 patients, less than 3 years old children were 76.6%. One hundred and nine patients had induced factors, and 177 patients had elevated white blood cell count. There were 168 patients with SSSS accompanied with fever, 34 patients accompanied with diarrhea, and 58 patients associated with septicemia. Eighty-five patients performed the bacterial cultures of the skin secretions, 21 did the throat swab, and 13 did both of the skin secretions and throat swab. Bacterial culture results showed that 119 samples were positive for Staphylococci. All patients were cured after antimicrobial therapy. The skin lesions were improved in 3.26 d. The mean hospital stay was 6.55 d. Recovery time of the body temperature was 3.48 d in average.
CONCLUSION
SSSS predominates in infants and children under 3 years old, and has tendency to combine with multi-organ symptoms. The early diagnosis and active antimicrobial treatment are the keys of successful treatments.
Anti-Bacterial Agents
;
therapeutic use
;
Child, Preschool
;
China
;
Humans
;
Infant
;
Length of Stay
;
Retrospective Studies
;
Risk Factors
;
Sepsis
;
Skin
;
microbiology
;
Staphylococcal Scalded Skin Syndrome
;
diagnosis
;
drug therapy
;
pathology
9.Cutaneous vasculitis and renal involvement in Mycoplasma pneumoniae infection.
Hajeong LEE ; Kyung Chul MOON ; Suhnggwon KIM
The Korean Journal of Internal Medicine 2015;30(3):402-405
No abstract available.
Acute Kidney Injury/microbiology
;
Anti-Bacterial Agents/therapeutic use
;
Biopsy
;
Humans
;
Kidney/*microbiology
;
Male
;
Middle Aged
;
Mycoplasma pneumoniae/drug effects/*isolation & purification
;
Nephritis/diagnosis/drug therapy/*microbiology
;
Pneumonia, Mycoplasma/diagnosis/drug therapy/*microbiology
;
Skin Diseases, Bacterial/diagnosis/drug therapy/*microbiology
;
Steroids/therapeutic use
;
Treatment Outcome
;
Vasculitis/diagnosis/drug therapy/*microbiology
10.Drug utilization review of mupirocin ointment in a Korean university-affiliated hospital.
Sung Hee YOUN ; Seung Soon LEE ; Sukyeon KIM ; Jeong A LEE ; Bum Joon KIM ; Jounghee KIM ; Hye Kyung HAN ; Jae Seok KIM
The Korean Journal of Internal Medicine 2015;30(4):515-520
BACKGROUND/AIMS: Intranasal mupirocin and chlorhexidine bathing are candidate strategies to prevent healthcare-associated infections caused by methicillin-resistant Staphylococcus aureus (MRSA). In Korea, intranasal mupirocin is not available, and mupirocin ointment, an over-the-counter drug, has been used indiscriminately. Furthermore, because it is covered by health insurance, mupirocin is easy to prescribe within hospitals. METHODS: We performed a mupirocin drug utilization review (DUR) within Hallym University Sacred Heart Hospital. Annual use of mupirocin was investigated between 2003 and 2013, and monthly consumption of mupirocin was assessed during the final 2-year period. The DUR focused on August 2012, the period of highest use of mupirocin. Also, we investigated trends in mupirocin resistance in MRSA between 2011 and 2013. RESULTS: Annual consumption of mupirocin increased from 3,529 tubes in 2003 to 6,475 tubes in 2013. During August 2012, 817 tubes were prescribed to 598 patients; of these, 84.9% were prescribed to outpatients, and 77.6% at the dermatology department. The most common indication was prevention of skin infections (84.9%), and the ointment was combined with systemic antibiotics in 62.9% of cases. The average duration of systemic antibiotic administration was about 7.8 days. The rate of low-level mupirocin resistance in MRSA increased from 8.0% to 22.0%, and that of high-level mupirocin resistance increased from about 4.0% to about 7.5%. CONCLUSIONS: Inappropriate use of mupirocin is prevalent. Considering the increase in resistance and the future application of intranasal mupirocin, prophylactic use of mupirocin in dermatology departments should be reconsidered.
Administration, Cutaneous
;
Anti-Bacterial Agents/*administration & dosage/adverse effects
;
Drug Prescriptions
;
Drug Resistance, Multiple, Bacterial
;
Drug Utilization Review
;
*Hospitals, University
;
Humans
;
Inappropriate Prescribing/*trends
;
Methicillin-Resistant Staphylococcus aureus/*drug effects
;
Microbial Sensitivity Tests
;
Mupirocin/*administration & dosage/adverse effects
;
Ointments
;
Practice Patterns, Physicians'/*trends
;
Predictive Value of Tests
;
Republic of Korea
;
Retrospective Studies
;
Staphylococcal Skin Infections/diagnosis/*drug therapy/microbiology
;
Time Factors

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