1.Comprehensive Molecular Genetic Analysis in Glioma Patients by Next Generation Sequencing
Taeeun KIM ; Ahwon LEE ; Stephan AHN ; Jae Sung PARK ; Sin Soo JEUN ; Youn Soo LEE
Brain Tumor Research and Treatment 2024;12(1):23-39
Background:
Glioma is caused by multiple genomic alterations. The evolving classification of glio-mas emphasizes the significance of molecular testing. Next generation sequencing (NGS) offers the assessment of parallel combinations of multiple genetic alterations and identifying actionable mutations that guide treatment. This study comprehensively analyzed glioma patients using multi-gene NGS panels, providing powerful insights to inform diagnostic classification and targeted therapies.
Methods:
We conducted a targeted panel-based NGS analysis on formalin-fixed and paraffin-embedded nucleic acids extracted from a total of 147 glioma patients. These samples underwent amplicon capture-based library preparation and sequenced using the Oncomine Comprehensive Assay platform. The resulting sequencing data were then analyzed using the bioinformatics tools.
Results:
A total of 301 mutations, were found in 132 out of 147 tumors (89.8%). These muta-tions were in 68 different genes. In 62 tumor samples (42.2%), copy number variations (CNVs) with gene amplifications occurred in 25 genes. Moreover, 25 tumor samples (17.0%) showed gene fusions in 6 genes and intragenic deletion in a gene. Our analysis identified actionable targets in several genes, including 11 with mutations, 8 with CNVs, and 3 with gene fusions and intragenic deletion. These findings could impact FDA-approved therapies, NCCN guideline-based treatments, and clinical trials.
Conclusion
We analyzed precisely diagnosing the classification of gliomas, detailing the frequency and co-occurrence of genetic alterations and identifying genetic alterations with potential therapeutic targets by NGS-based molecular analysis. The high-throughput NGS analysis is an efficient and powerful tool to comprehensively support molecular testing in neurooncology.
2.Single-center study on clinicopathological and typical molecular pathologic features of metastatic brain tumor
Su Hwa KIM ; Young Suk LEE ; Sung Hak LEE ; Yeoun Eun SUNG ; Ahwon LEE ; Jun KANG ; Jae-Sung PARK ; Sin Soo JEUN ; Youn Soo LEE
Journal of Pathology and Translational Medicine 2023;57(4):217-231
Background:
The metastatic brain tumor is the most common brain tumor. The aim of this study was to demonstrate the clinicopathological and molecular pathologic features of brain metastases (BM).
Methods:
A total of 269 patients were diagnosed with BM through surgical resection at Seoul St. Mary’s Hospital from January 2010 to March 2020. We reviewed the clinicopathological features and molecular status of primary and metastatic brain tissues using immunohistochemistry and molecular pathology results.
Results:
Among 269 patients, 139 males and 130 females were included. The median age of primary tumor was 58 years (range, 13 to 87 years) and 86 patients (32.0%) had BM at initial presentation. Median BM free interval was 28.0 months (range, 1 to 286 months). The most frequent primary site was lung 46.5% (125/269), and followed by breast 15.6% (42/269), colorectum 10.0% (27/269). Epidermal growth factor receptor (EGFR) mutation was found in 50.8% (32/63) and 58.0% (40/69) of lung primary and BM, respectively. In both breast primary and breast cancer with BM, luminal B was the most frequent subtype at 37.9% (11/29) and 42.9% (18/42), respectively, followed by human epidermal growth factor receptor 2 with 31.0% (9/29) and 33.3% (14/42). Triple-negative was 20.7% (6/29) and 16.7% (7/42), and luminal A was 10.3% (3/29) and 7.1% (3/42) of breast primary and BM, respectively. In colorectal primary and colorectal cancer with BM, KRAS mutation was found in 76.9% (10/13) and 66.7% (2/3), respectively.
Conclusions
We report the clinicopathological and molecular pathologic features of BM that can provide useful information for understanding the pathogenesis of metastasis and for clinical trials based on the tumor’s molecular pathology.
3.Cytomegalovirus-Specific Immunotherapy for Glioblastoma Treatments
Jaehyun AHN ; Christopher SHIN ; Yeo Song KIM ; Jae-Sung PARK ; Sin-Soo JEUN ; Stephen AHN
Brain Tumor Research and Treatment 2022;10(3):135-143
Over the last two decades, numerous studies have investigated the presence of human cytomegalovirus (CMV) within glioblastoma or gliomas; however, the results are severely conflicting. While a few researchers have suggested the potential benefits of cytotoxic T lymphocyte or dendritic cell-based vaccines for recurrent or newly diagnosed glioblastoma patients, several studies did not at all agree with the existence of CMV in glioblastoma cells. In this review, we summarized the conflicting results and issues about the detection of CMV in glioblastoma or glioma patients. We also provided the clinical data of published and unpublished clinical trials using CMV-specific immunotherapy for glioblastomas.
4.Effect of Cumulative Dexamethasone Dose during Concomitant Chemoradiation on Lymphopenia in Patients with Newly Diagnosed Glioblastoma
Changik LEE ; Stephen AHN ; Jae-Sung PARK ; Jin Ho SONG ; Yong-Kil HONG ; Sin-Soo JEUN
Brain Tumor Research and Treatment 2020;8(2):e12-
Background:
Lymphopenia frequently occurs after concomitant chemoradiation (CCRT) in patients with glioblastoma (GBM) and is associated with worse overall survival (OS). A few studies have tried to identify risk factors for lymphopenia; however, the results were not clear. We aimed to identify potential risk factors for lymphopenia, focusing on the use of dexamethasone to control cerebral edema in patients with GBM.
Methods:
The electronic medical records of 186 patients with newly diagnosed GBM treated at our institution between 2009 and 2017 were retrospectively examined. Acute lymphopenia was defined as total lymphocyte count less than 1,000 cells/μL at 4 weeks after completion of CCRT.Multivariate logistic regression analysis was used to identify independent risk factors for lymphopenia, and Cox regression analysis was used to identify independent risk factors for OS.
Results:
Of the 125 eligible patients, 40 patients (32.0%) developed acute lymphopenia. Female sex and median daily dexamethasone dose ≥2 mg after initiation of CCRT were independent risk factors for acute lymphopenia on multivariate analysis. Acute lymphopenia, extent of surgical resection, and performance status were associated with OS; however, dexamethasone use itself was not an independent risk factor for poor OS.
Conclusion
Female sex, median daily dexamethasone dose ≥2 mg after initiation of CCRT until 4 weeks after completion of CCRT may be associated with acute lymphopenia. However, dexamethasone use itself did not affect OS in patients newly diagnosed with GBM. These results should be validated by further prospective studies controlling for other confounding factors.
5.Combined Treatment with Methylprednisolone and Human Bone Marrow-Derived Mesenchymal Stem Cells Ameliorate Experimental Autoimmune Encephalomyelitis.
Mi Jin KIM ; Chung Heon RYU ; Seong Muk KIM ; Jung Yeon LIM ; Won Shik KIM ; Sin Soo JEUN
Tissue Engineering and Regenerative Medicine 2018;15(2):183-194
Multiple sclerosis (MS) is an inflammatory demyelinating disease of the central nervous system. Although advances have been made in the treatment of MS, such as the use of IFN-β, glucocorticoids and stem cells, the therapeutic effects of these treatments are not sufficient. In the present study, we evaluated whether the combination of methylprednisolone (MP) and human bone marrow-derived mesenchymal stem cells (BM-MSCs) could enhance the therapeutic effectiveness in experimental autoimmune encephalomyelitis (EAE), a model for MS. EAE was induced by immunizing C57BL/6 mice with myelin oligodendrocyte glycoprotein 35-55 (MOG 35-55). The immunized mice received an intraperitoneal injection of MP (20 mg/kg), an intravenous injection of BM-MSCs (1 × 10⁶ cells) or both on day 14 after immunization. Combination treatment significantly ameliorated the clinical symptoms, along with attenuating inflammatory infiltration and demyelination, compared to either treatment alone. Secretion of pro-inflammatory cytokines (IFN-γ, TNF-α, IL-17) was significantly reduced, and anti-inflammatory cytokines (IL-4, IL-10) was significantly increased by the combination treatment as compared to either treatment alone. Flow cytometry analysis of MOG-reactivated T cells in spleen showed that combination treatment reduced the number of CD4⁺CD45⁺ and CD8⁺ T cells, and increased the number of CD4⁺CD25⁺Foxp3⁺ regulatory T cells. Furthermore, combination treatment enhanced apoptosis in MOG-reactivated CD4⁺ T cells, a key cellular subset in MS pathogenesis. Combination treatment with MP and BM-MSCs provides a novel treatment protocol for enhancing therapeutic effects in MS.
Animals
;
Apoptosis
;
Central Nervous System
;
Clinical Protocols
;
Cytokines
;
Demyelinating Diseases
;
Encephalomyelitis, Autoimmune, Experimental*
;
Flow Cytometry
;
Glucocorticoids
;
Humans*
;
Immunization
;
Injections, Intraperitoneal
;
Injections, Intravenous
;
Mesenchymal Stromal Cells*
;
Methylprednisolone*
;
Mice
;
Multiple Sclerosis
;
Myelin-Oligodendrocyte Glycoprotein
;
Spleen
;
Stem Cells
;
T-Lymphocytes
;
T-Lymphocytes, Regulatory
;
Therapeutic Uses
6.Complications Following Transradial Cerebral Angiography : An Ultrasound Follow-Up Study
Wonki YOON ; Woo Keun KWON ; Omar CHOUDHRI ; Jaegeun AHN ; Hanyong HUH ; Choel JI ; Huy M DO ; Aditya MANTHA ; Sin Soo JEUN
Journal of Korean Neurosurgical Society 2018;61(1):51-59
OBJECTIVE: The feasibility and usefulness of transradial catheterization for coronary and neuro-intervention are well known. However, the anatomical change in the catheterized radial artery (RA) is not well understood. Herein, we present the results of ultrasonographic observation of the RA after routine transradial cerebral angiography (TRCA).METHODS: Patients who underwent routine TRCA with pre- and post-procedure Doppler ultrasonography (DUS) of the catheterized RA were enrolled. We then recorded and retrospectively reviewed the diameter and any complicated features of the RA observed on DUS, and the factors associated with the diameter and complications were analyzed.RESULTS: A total of 223 TRCAs across 181 patients were enrolled in the current study. The mean RA diameter was 2.48 mm and was positively correlated with male gender (p < 0.001) and hypertension (p < 0.002). The median change in diameter after TRCA was less than 0.1 mm (range, -1.3 to 1.2 mm) and 90% of changes were between -0.8 and +0.7 mm. Across 228 procedures, there were 12 cases (5.3%) of intimal hyperplasia and 22 cases (9.6%) of asymptomatic local vascular complications found on DUS. Patients with abnormal findings on the first procedure had a smaller pre-procedural RA diameter than that of patients without findings (2.26 vs. 2.53 mm, p=0.0028). There was no significant difference in the incidence of abnormal findings for the first versus subsequent procedures (p=0.68).CONCLUSION: DUS identified the pre- and post-procedural diameter and local complications of RA. Routine TRCA seems to be acceptable with regard to identifying local complications and changes in RA diameter.
Catheterization
;
Catheters
;
Cerebral Angiography
;
Follow-Up Studies
;
Humans
;
Hyperplasia
;
Hypertension
;
Incidence
;
Male
;
Radial Artery
;
Retrospective Studies
;
Ultrasonography
;
Ultrasonography, Doppler
7.Extra-Axial and Clear Cell Type Ependymoma, Mimicking a Convexity Meningioma.
Stephen AHN ; Young Joo KIM ; Youn Soo LEE ; Sin Soo JEUN
Brain Tumor Research and Treatment 2017;5(2):127-130
A 33-year-old woman presented with tingling and paresthesia on left extremity for 2 months. Magnetic resonance imaging revealed that the tumor was iso- and hypo-intensity on T1-weighted image, mixed iso- and high-signal intensity on T2-weighted images and heterogeneously enhanced with rim enhancement. Neither arachnoid cleft nor dural tail was certain but mass was located extra-axially so meningioma was suspected. During operation, tumor wasn't attached to dura at all but arachnoid attachment was seen. Pathologically, clear cell type ependymoma was confirmed. Details of diagnosis and treatment of this tumor is described.
Adult
;
Arachnoid
;
Diagnosis
;
Ependymoma*
;
Extremities
;
Female
;
Humans
;
Magnetic Resonance Imaging
;
Meningioma*
;
Paresthesia
;
Tail
8.Memantine Induces NMDAR1-Mediated Autophagic Cell Death in Malignant Glioma Cells.
Wan Soo YOON ; Mi Young YEOM ; Eun Sun KANG ; Yong An CHUNG ; Dong Sup CHUNG ; Sin Soo JEUN
Journal of Korean Neurosurgical Society 2017;60(2):130-137
OBJECTIVE: Autophagy is one of the key responses of cells to programmed cell death. Memantine, an approved anti-dementia drug, has an antiproliferative effect on cancer cells but the mechanism is poorly understood. The aim of the present study was to test the possibility of induction of autophagic cell death by memantine in glioma cell lines. METHODS: Glioma cell lines (T-98 G and U-251 MG) were used for this study. RESULTS: The antiproliferative effect of memantine was shown on T-98 G cells, which expressed N-methyl-D-aspartate 1 receptor (NMDAR1). Memantine increased the autophagic-related proteins as the conversion ratio of light chain protein 3-II (LC3-II)-/LC3-I and the expression of beclin-1. Memantine also increased formation of autophagic vacuoles observed under a transmission electron microscope. Transfection of small interfering RNA (siRNA) to knock down NMDAR1 in the glioma cells induced resistance to memantine and decreased the LC3-II/LC3-I ratio in T-98 G cells. CONCLUSION: Our study demonstrates that in glioma cells, memantine inhibits proliferation and induces autophagy mediated by NMDAR1.
Autophagy*
;
Cell Death
;
Cell Line
;
Gastrin-Secreting Cells
;
Glioma*
;
Memantine*
;
N-Methylaspartate
;
RNA, Small Interfering
;
Transfection
;
Vacuoles
9.Acute Paraplegia as a Result of Hemorrhagic Spinal Ependymoma Masked by Spinal Anesthesia: Case Report and Review of Literature.
Sang Hyo LEE ; David Jaehyun PARK ; Sin Soo JEUN
Brain Tumor Research and Treatment 2016;4(1):30-34
Ependymomas are the most common intramedullary spinal cord tumors in adults. Although a hemorrhage within spinal ependymoma on imaging studies is not uncommon, it has rarely been reported to bea cause of acute neurological deficit. In the present report, we describe a case of a 24-year-old female patient who developed acute paraplegia as a result of hemorrhagic spinal ependymoma immediately after a cesarean delivery under spinal regional anesthesia. We review the literature of hemorrhagic spinal ependymomas presenting with acute neurological deficit and discuss the most appropriate treatment for a good neurological recovery.
Adult
;
Anesthesia, Conduction
;
Anesthesia, Spinal*
;
Ependymoma*
;
Female
;
Hemorrhage
;
Humans
;
Masks*
;
Paraplegia*
;
Spinal Cord Neoplasms
;
Young Adult
10.Acute Paraplegia as a Result of Hemorrhagic Spinal Ependymoma Masked by Spinal Anesthesia: Case Report and Review of Literature.
Sang Hyo LEE ; David Jaehyun PARK ; Sin Soo JEUN
Brain Tumor Research and Treatment 2016;4(1):30-34
Ependymomas are the most common intramedullary spinal cord tumors in adults. Although a hemorrhage within spinal ependymoma on imaging studies is not uncommon, it has rarely been reported to bea cause of acute neurological deficit. In the present report, we describe a case of a 24-year-old female patient who developed acute paraplegia as a result of hemorrhagic spinal ependymoma immediately after a cesarean delivery under spinal regional anesthesia. We review the literature of hemorrhagic spinal ependymomas presenting with acute neurological deficit and discuss the most appropriate treatment for a good neurological recovery.
Adult
;
Anesthesia, Conduction
;
Anesthesia, Spinal*
;
Ependymoma*
;
Female
;
Hemorrhage
;
Humans
;
Masks*
;
Paraplegia*
;
Spinal Cord Neoplasms
;
Young Adult

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