1.A novel artificial intelligence model for Breast Imaging Reporting and Data System 4 category breast masses in dynamic ultrasound diagnosis
Shunmin QIU ; Huanchong LU ; Zhemin ZHUANG ; Yang LI ; Shaoqi CHEN
Chinese Journal of Ultrasonography 2024;33(7):589-596
Objective:To investigate the diagnostic performance of a new artificial intelligence (AI) model incorporating SAM-YOLOV 5 deep learning network and image processing techniques for Breast Imaging Reporting and Data System (BI-RADS) 4 category breast masses in dynamic ultrasound classification.Methods:A total of 530 pathologically proven breast lesions of BI-RADS category 4 in 458 patients were retrospectively collected from May 2019 to June 2023 at the First Affiliated Hospital of Shantou University Medical College. The model was trained and tested at ratio of 7∶3, the area under the ROC curve (AUC), sensitivity, specificity, positive predictive value and negative predictive value of the model were determined. Firstly, the test results of the model were compared with a single static image, then, compared with the three conventional deep learning networks as well as senior and junior radiologists. The diagnostic efficiency of the new model in BI-RADS categories 4a, 4b, and 4c masses were analyzed.Results:The AUC, sensitivity, specificity, positive predictive value and negative predictive value of the new model based on dynamic ultrasound video were higher than those using a single ultrasound static imaging (all P<0.05). Based on dynamic ultrasound video, the AUC, sensitivity, specificity, positive predictive value and negative predictive value of the new model were significantly higher than those of YOLOV 5, VGG 16, Resnet 50 and the junior group (all P<0.05), lower than the senior group (just specificity and negative predictive value, P<0.05). The diagnostic efficiency of new model for BI-RADS category 4b masses was the lowest. Conclusions:Based on the SAM-YOLOV 5 deep learning network and image processing techniques, the new model has a high diagnostic value for breast mass dynamic ultrasound classification and is expected to be used in assisting clinical diagnosis.
2.Comparison of efficacy and safety between robotic and laparoscopic pancreatic tumor enucleation
Zhiqiang LI ; Jichun SUN ; Guangping TU ; Shuangxi XIE ; Yunfei LIU ; Dongwen WANG ; Shunmin HE ; Xiao YU
Chinese Journal of General Surgery 2024;33(9):1430-1439
Background and Aims:In the era of minimally invasive surgery,the role of pancreatic tumor enucleation(PTE)in treating benign or low-grade malignant tumors is gaining attention.The Da Vinci robot offers advantages such as enhanced visualization and flexible instrument manipulation,which can ensure the safe implementation of PTE.However,whether robotic pancreatic tumor excision(RPTE)is superior to laparoscopic pancreatic tumor enucleation(LPTE)remains undetermined.Therefore,this study was performed to explore this aspect. Methods:The clinical data of 38 patients who underwent surgical treatment for benign or low-grade malignant tumors in the Third Xiangya Hospital of Central South University from April 2020 to May 2024 were collected.Among them,18 cases underwent RPTE(RPTE group),and 20 cases underwent LPTE(LPTE group).Relevant clinical variables were compared between the two groups,and subgroup comparisons were further conducted for patients with tumors in the head and neck/body/tail of the pancreas. Results:The average operative time for the entire group was 125 min,with an average intraoperative blood loss of 67.89 mL,and no C-grade pancreatic fistula occurred.The incidence rates of B-grade pancreatic fistula,postoperative bleeding,and readmission were 39.5%,21.1%,and 18.4%,respectively,with an average postoperative hospital stay of 11.44 d.Overall,the RPTE group had shorter operative time and less intraoperative blood loss than the LPTE group(both P<0.05).There were no statistically significant differences between the two groups regarding the incidence of B-grade pancreatic fistula,intraoperative bleeding,readmission rate,and postoperative hospital stay(all P>0.05).Subgroup analysis showed that for patients with head tumors,the RPTE group had shorter operative time,less intraoperative blood loss,and a lower incidence of postoperative bleeding than the LPTE group(all P<0.05).However,the differences in the incidence of B-grade pancreatic fistula,readmission rate,and postoperative hospital stay were not statistically significant(all P>0.05).In patients with neck/body/tail tumors,the RPTE group also had shorter operative time and less intraoperative blood loss(both P<0.05),but the differences in incidence of B-grade pancreatic fistula,incidence of postoperative bleeding,readmission rate,and postoperative hospital stay were not statistically significant(all P>0.05). Conclusion:Minimally invasive PTE for the treatment of benign or low-grade malignant pancreatic tumors is safe.Compared to LPTE,RPTE can significantly reduce operative time and intraoperative blood loss and shows certain advantages in reducing postoperative complications,particularly for patients with head tumors.However,the conclusion of this study needs to be confirmed by larger prospective studies.
3.SmProt:A Reliable Repository with Comprehensive Annotation of Small Proteins Identified from Ribosome Profiling
Li YANYAN ; Zhou HONGHONG ; Chen XIAOMIN ; Zheng YU ; Kang QUAN ; Hao DI ; Zhang LILI ; Song TINGRUI ; Luo HUAXIA ; Hao YAJING ; Chen RUNSHENG ; Zhang PENG ; He SHUNMIN
Genomics, Proteomics & Bioinformatics 2021;19(4):602-610
Small proteins specifically refer to proteins consisting of less than 100 amino acids translated from small open reading frames (sORFs), which were usually missed in previous genome annotation. The significance of small proteins has been revealed in current years, along with the discovery of their diverse functions. However, systematic annotation of small proteins is still insufficient. SmProt was specially developed to provide valuable information on small proteins for scientific community. Here we present the update of SmProt, which emphasizes reliability of translated sORFs, genetic variants in translated sORFs, disease-specific sORF translation events or sequences, and remarkably increased data volume. More components such as non-ATG translation initiation, function, and new sources are also included. SmProt incorporated 638,958 unique small proteins curated from 3,165,229 primary records, which were computationally predicted from 419 ribosome profiling (Ribo-seq) datasets or collected from literature and other sources from 370 cell lines or tissues in 8 species (Homo sapiens, Mus musculus, Rattus norvegicus, Drosophila melanogaster, Danio rerio, Saccharomyces cere-visiae, Caenorhabditis elegans, and Escherichia coli). In addition, small protein families identified from human micro-biomes were also collected. All datasets in SmProt are free to access, and available for browse, search, and bulk downloads at http://bigdata.ibp.ac.cn/SmProt/.
4.Content Determination of Indicator Components in Jianpi Yishen Pills and the Effects on Calcium ,Phosphorus Metabolism and Inflammatory Factors in CRF Model Rats
Xia JIANG ; Qiugu CHEN ; Liqin GUO ; Zhaoliu HU ; Shiying HUANG ; Fochang WANG ; Ping ZHENG ; Tiegang YI ; Shangbin ZHANG ; Shunmin LI ; Jianping CHEN
China Pharmacy 2019;30(16):2193-2199
OBJECTIVE: To establish the method for the content determination of astragaloside Ⅳ, emodin and chrysophanol in Jianpi yishen pills (JYP) and to investigate the effects of JYP on calcium, phosphorus metabolism and inflammatory factors in chronic renal failure (CRF) model rats. METHODS: HPLC method was adopted. The determination of astragaloside Ⅳ, emodin and chrysophanol was perform on Agilent Zorbax SB-C18, Agilent TC C18 column, respectively; mobile phase consisted of acetonitrile-water (36 ∶ 64, V/V) and methanol-0.1% phosphoric acid solution (75 ∶ 25, V/V); the detectors were evaporative light-scattering detector and diode-array detector (detection wavelength of 254 nm); the column temperatures were set at 30 ℃and 25 ℃ at the flow rate of 1.0 mL/min; the sample sizes were 20 and 10 μL. SD rats were randomly divided into normal group, model group, Niaoduqing group (1.80 g/kg) and JYP low-dose, medium-dose and high-dose groups (1.71, 3.43, 6.85 g/kg), with 10 rats in each group. Except for normal group, CRF model of other groups were established by 5/6 nephrectomy in other groups. Four months after modeling, normal group and model group were given constant volume of water intragastrically; admi- nistration groups were given relevant medicine intragastrically, once a day, for consecutive 12 weeks. The levels of serum creatinine (Scr), urea nitrogen (BUN), parathyroid hormone (PTH) and inflammatory factors (IL-6, TNF-α) were measured by ELISA. Methyl thymol blue colorimetric method and phosphomolybdic acid method were used to detect the contents of blood calcium and phosphorus. Correlation of inflammatory factors with related calcium and phosphorus metabolism indexes (blood calcium, blood phosphorus, PTH) were investigated with Pearson assay. RESULTS: The linear range of astragaloside Ⅳ, emodin and chrysophanol were 54.537-381.759, 2.960-20.720, 6.318-44.223 μg/mL, respectively. The limits of quantitation were 0.010, 0.288, 0.216 μg/mL; the limits of detection were 0.003, 0.096, 0.072 μg/mL. RSDs of precision, reproducibility and stability tests were all lower than 3.0%. The recoveries were 97.18%-102.33%(RSD<3%,n=9). After modeling (before medication), serum contents of Scr and BUN in model group and administration group were increased significantly, compared with normal group (P<0.01). After medication, above indexes of administration group were decreased significantly, compared with model group and the same group before medication (P<0.01). Compared with normal group, the content of blood calcium were decreased significantly, while the contents of IL-6 and TNF-α were increased significantly (P<0.01). Compared with model group, the content of blood calcium were increased significantly in JYP medium-dose and high-dose groups, while serum content of PTH in Niaoduqing group, serum contents of PTH and IL-6 in JYP medium-dose and high-dose groups as well as serum content of TNF-α in administration group were decreased significantly (P<0.05 or P<0.01). JYP had no significant effect on blood phosphorus in rats, and there was no correlation of inflammatory factors with related calcium and phosphorus metabolism indexes (P>0.05). CONCLUSIONS: The established content determination method is simple, specific and sensitive, and can be used for content determination of astragaloside Ⅳ, emodin and chrysophanol in JYP. JYP can improve renal function of CRF model rats, relieve calcium metabolism disorder and inhibit the expression of inflammatory factors.
5.Optimization of Water Extraction Technology for Bupi Yangshen Granules Based on Multi-index Weighting Analysis Method Combined with Orthogonal Test
Zhaoliu HU ; Qiugu CHEN ; Fochang WANG ; Shiying HUANG ; Ping ZHENG ; Shangbin ZHANG ; Tiegang YI ; Shunmin LI ; Jianping CHEN
China Pharmacy 2019;30(19):2656-2662
OBJECTIVE: To optimize the water extraction technology of Bupi yangshen granules, and to provide basis for the follow-up research and development of it. METHODS: The contents of astragaloside Ⅳ and salvianolic acid B in water extract of Bupi yangshen granules, were determined by HPLC-ELSD and HPLC-DAD. Using the comprehensive score of contents of astragaloside Ⅳ and salvianolic acid B and extract yield as index, weight coefficient of indicators were determined by AHP, CRITIC and AHP-CRITIC mixed weighting method. L9(34) orthogonal test was used to optimize decoction time, water volume and decoction times in water extraction technology of Bupi yangshen granules. Validation test was also performed. RESULTS: The weight coefficient determined by AHP-CRITIC mixed weighting method was the most reasonable. The optimal extraction technology was decocting twice, adding 12-fold water, 1 h each time. The results of 3 times of validation test showed that the average contents of astragaloside Ⅳ and salvianolic acid B were 8.79, 609.50 mg (total amount of 121 g medicinal herbs extracted from whole prescription), respectively. The average extract yield was 31.24%. Average comprehensive score was 96.59(RSD=1.01%,n=3). CONCLUSIONS: The optimized water extraction technology is reproducible, stable and feasible. It can provide a scientific basis for the follow-up development and industrial production of Bupi yangshen granules.
6.Prenatal ultrasound diagnosis of fetal ear auricle abnormalities
Shaoqi, CHEN ; Xueying, LI ; Xiaohong, ZHANG ; qiulin, WU ; Shunmin, QIU
Chinese Journal of Medical Ultrasound (Electronic Edition) 2017;14(5):373-379
Objective The purpose of this study was to assess the value of prenatal ultrasound diagnosis for fetal ear auricle malformations.Methods The coronal and sagittal planes of fetuses ears were obtained prospectively in 6239 singleton fetuses in the First Affiliated Hospital of Shantou University Medical College for the period from 2012 February to 2015 December,the ultrasound images and pregnancy outcomes were analyzed in 11 cases of fetuses ear auricle malformations diagnosed prenatally.Results Eleven Cases of fetuses ear auricle malformations include with 7 cases of microtia,3 cases of low-set ears and 1 case of anotia.Eleven cases were combined with other structural malformations were as followings,3cases with craniocerebral congenital malformation,5 cases with dentofacial deformity,5 cases with malformation of heart,3 cases with limb deformity.Cordocentesis was performed in 7 cases among which 6 with abnormal karyotype,including 2 cases of trisomy 21,2 cases of trisomy 13,2 cases of trisomy 18,1 case of 22ql 1 abnormalities.Compared with the postpartum facial examination,prenatal ultrasound correctly diagnosed 10 cases of fetal ear auricle malformations,missed diagnosis 1 case of microtia.Conlusions Fetus with ear auricle abnormalities have characteristic prenatal ultrasound imaging;prenatal ultrasonography can provide reliable information in the diagnosis of this disease.This study suggests that antenatal ear auricle length measurements might be a promising sonographic screening method for the detection of abnormal karyotype in pregnancy.
7.Experiences of professor Li Shunmin in treating chronic kidney disease with data mining
Na GE ; Weijia GUO ; Dong YANG ; Huili SUN ; Tiegang YI ; Shunmin LI
International Journal of Traditional Chinese Medicine 2017;39(4):326-332
Objectives Explore the experiences of professor Li Shunmin in treating chronic kidney diseases (CKD) according to spleen and kidney theory.Methods Information of medical records was acquired from Shenzhen TCM hospital information management department. It included the records from Jan, 2014 to Mar, 2016. Access database was established and SQL was used for data processing. Cytoscape 2.8 software was used to visualize the results and analyze the treatment characteristics in CKD.Results ProfessorLi used herbs of nourishing spleen and kidney to treat CKD. The herbs included Astragalus membranaceus, Rhizoma Dioscoreae, Rehmannia glutinosa and Gordon Euryale. The rules of treatment included invigorating spleen and kidney, and regulating liver and lung. The characteristics of using herbs included combination of cooling and warming herbs, bitter and pungent herbs, and sweet herbs for CKD.Conclusions Data mining could help to discover the rules of Li Shunmin in treating CKD. The results confirmed the academic attitude of treating CKD on spleen and kidney. It provided ideas and direction for CKD treatment.
8.Clinical efficacy of pancreaticoduodenectomy and duodenum-preserving pancreatic head resection for the treatment of chronic pancreatitis with mass in the head of the pancreas
Shunmin HE ; Zhiqiang LI ; Xiao YU ; Can YU ; Hongwei ZHU ; Dongwen WANG ; Jun SONG
Chinese Journal of Digestive Surgery 2015;14(8):653-658
Objective To investigate the clinical efficacy of pancreaticoduodenectomy (PD) and duodenumpreserving pancreatic head resection (DPPHR,including Beger,Frey and Berne procedures)for the treatment of chronic pancreatitis (CP) with mass in the head of the pancreas.Methods The clinical data of 48 patients with CP who were admitted to the Armed Police Corps Hospital of Hunan province(13) and the Third Xiangya Hospital of Central South University (35) between January 2007 and December 2013 were retrospectively analyzed.The operation methods were selected according to clinical symptoms,imaging findings and intraoperative pathological examinations.Twenty-three patients receiving PD (Whipple procedure or pylorus-preserving PD) were allocated into PD group and 25 receiving DPPHR (Beger,Frey and Berne procedures) were allocated into DPPHR group.The operation time,volume of intraoperative blood loss,rate of postoperative pain relief,changes of pancreatic endocrine and exocrine function,complications,duration of hospital stay and hospital expenses in the 2 groups were analyzed.Patients were followed up by telephone interview and outpatient examination up to September 2014.Measurement data with normal distribution were presented as (x) ± s.Comparison between groups was analyzed using the t test.Count data were analyzed using chi-square test or Fisher exact probability.Results Of the 23 patients in the PD group,15 patients received Whipple procedure and 8 patients received pylorus preserving PD.Of 25 patients in the DPPHR group,8 patients received Beger procedure,13 patients received Frey procedure and 4 patients received Berne procedure.The operation time and volume of intraoperative blood loss were (5.5 ± 0.4) hours,(372 ± 174) mL in the PD group,and (4.2 ± 0.6) hours,(272 ± 114) mL in the DPPHR group,showing significant differences between the 2 groups (t =8.712,2.375,P < 0.05).Three patients had massive hemorrhage in the PD group and 2 patients receiving Beger procedure had massive hemorrhage due to portal vein injury,with no significant difference (x2=0.010,P > 0.05).The intraoperative pathologic examinations of frozen section showed chronic inflammation in all pancreatic tissue samples with fibrous tissue proliferations.Overall pain relief rate was 95.7% (22/23) in the PD group,including 20 complete remissions and 2 partial remissions,and overall pain relief rate was 92.0% (23/25) in the PD group,including 18 complete remissions and 5 partial remissions,which were no different in overall pain relief rate (x2 =0.000,P > 0.05).The morbidity of postoperative diabetes mellitus and dyspepsia with fatty diarrhea were 38.9% (7/18) and 35.7% (5/14) in the PD group,which were no different from 9.5% (2/21) and 20.0% (3/15) in the DPPHR group (x2=3.200,0.281,P >0.05).The incidence of postoperative complication was 30.4% (7/23) in the PD group,including 1 case of intra-abdominal hemorrhage,pancreatic fistula and localized peritonitis,1 case of pancreatic fistula,2 cases of biliary fistula,3 cases of delayed gastric emptying.Patients with pancreatic fistula and biliary fistula recovered after 1-week sufficient drainage.The incidence of postoperative complication was 4.0% (1/25) in the DPPHR group,including 1 case of pancreatic fistula,showing significant difference in incidence of postoperative complication (x2=4.274,P < 0.05).The duration of postoperative stay and hospital expense were (12.4 ± 2.5) days and (57 751 ± 6 772) yuan in the PD group,which were significantly different from (8.2 ± 1.8) days and (49 109 ± 6 168)yuan in the DPPHR group (t =6.576,4.645,P < 0.05).Forty-eight patients were followed up with a median time of 51.6 months (9.0-92.0 months).Of the 2 patients died,1 patient who underwent Frey procedure died 3 months after diagnosis of pancreatic cancer due to epigastric pain at postoperative month 6,the other died 2 years later due to cardiovascular disease.Among 48 patients with follow-up,1 received biliary-intestine drainage 6 months later and other patients had no recurrence or canceration.Conclusions DPPHR is safe and effective for chronic pancreatitis with mass in the head of the pancreas,having advantages such as shorter duration of operation,less intraoperative hemorrhage,faster postoperative recover,shorter duration of hospital stay and delayed hypofunction of pancreatic endocrine and exocrine function.But DPPHR cannot completely replace PD,It is necessary to master indications for all kinds of operations and choose proper operative approaches based on lesion characteristics.
9.Diterpene constituents of Tripterygium willfordii (II).
Sui LIN ; Huiqing QUE ; Huayi PENG ; Liping QIAN ; Shunmin GUO ; Yuanchao LI
Acta Pharmaceutica Sinica 2011;46(8):942-5
In order to study the constituents and pharmacology of Tripterygium plants (Tripterygium willfordii Hook.f), a variety of chromatography methods were used. Four compounds were isolated from Tripterygium plant and their structures were elucidated by UV, IR, MS, HR-MS, 1H NMR, 13C NMR and 2D-NMR techniques. The isolated compounds were named as triptonide (1), neo-triptetraolide (2), 2alpha-hydroxytriptonide (3), and 15-hydroxytriptonide (4), separately. Compounds 3, 4 belong to new diterpenoids, which can inhibit the growth of K562 cells (leukemia cells) and HL60 cells (acute myeloid leukemia cells).
10.Expression of MCP-1 in the pancreas of piglet with chronic obstructive pancreatitis and its significance
Yang BIAN ; Na TA ; Lin LI ; Qiao ZHENG ; Shunmin ZHANG ; Jianming ZHENG ; Changjing ZUO
Chinese Journal of Pancreatology 2010;10(6):412-414
Objective To determine the serum concentration of MCP-1 and the expression of MCP-1 protein in the pancreas in the piglet with chronic obstructive pancreatitis and to explore the role of MCP-1 protein in pancreatic fibrosisits.Methods The piglet model of chronic obstructive pancreatitis was established by incomplete ligation of the pancreatic duct.The piglets were sacrificed at 4, 6, 8 weeks after induction.Pathological changes of pancreas were examined.Pancreatic fibrosis was assessed by VG staining.Serum MCP-1 concentrations were detected by ELISA method.MCP-1 and α-SMA, PDGF, TGF-β1 and NF-κB protein expression were detected by immunohistochemistry.Results The induction was successful in 14 piglets ( 58.3% ).Mild atrophic changes, interstitial fibrosis, chronic inflammatory cell infiltration could be observed in the body and tail of pancreas from the 4th week in the experimental group.The most obvious changes occurred in the 8th week.Stage Ⅰ pancreatic fibrosis occurred in 5 piglets (35.7%), stage Ⅱ in 4 piglets (28.6%), stage Ⅲ in 5 rats ( 35.7% ).Seurm MCP-1 at 4, 6, 8 weeks was ( 102.44 ± 36.25 ) pg/ml,(97.84 ± 28.67) pg/ml, ( 94.32 ± 28.42 ) pg/ml, respectively, and was significantly higher than that in control group [ ( 10.42 ±5.86) pg/ml, (8.58 ±4.86) pg/ml, (8.22 ±4.58) pg/ml, P <0.01 ].There was no MCP-1 protein expression in the control group;MCP-1 protein was detected in the successful induction group, and MCP-1 expression was positively correlated with expressions of the PDGF, TGF-β1, α-SMA and NF-κB.Conclusions MCP-1 may play an important role in the course of pancreatic fibrosis in chronic obstructive pancreatitis.

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