1.Diagnostic Utility of Whole Genome Sequencing After Negative Karyotyping/Chromosomal Microarray in Infants Born With Multiple Congenital Anomalies
Misun YANG ; Jee Ah KIM ; Heui Seung JO ; Jong-Ho PARK ; So Yoon AHN ; Se In SUNG ; Won Soon PARK ; Hye-Won CHO ; Jeong-Min KIM ; Mi-Hyun PARK ; Hyun-Young PARK ; Ja-Hyun JANG ; Yun Sil CHANG
Journal of Korean Medical Science 2024;39(36):e250-
Background:
Achieving a definitive genetic diagnosis of unexplained multiple congenital anomalies (MCAs) in neonatal intensive care units (NICUs) infants is challenging because of the limited diagnostic capabilities of conventional genetic tests. Although the implementation of whole genome sequencing (WGS) has commenced for diagnosing MCAs, due to constraints in resources and faculty, many NICUs continue to utilize chromosomal microarray (CMA) and/or karyotyping as the initial diagnostic approach. We aimed to evaluate the diagnostic efficacy of WGS in infants with MCAs who have received negative results from karyotyping and/or CMA.
Methods:
In this prospective study, we enrolled 80 infants with MCAs who were admitted to a NICU at a single center and had received negative results from CMA and/or karyotyping.The phenotypic characteristics were classified according to the International Classification of Diseases and the Human Phenotype Ontology. We assessed the diagnostic yield of trioWGS in infants with normal chromosomal result and explored the process of diagnosing by analyzing both phenotype and genotype. Also, we compared the phenotype and clinical outcomes between the groups diagnosed with WGS and the undiagnosed group. Results: The diagnostic yield of WGS was 26% (21/80), of which 76% were novel variants.There was a higher diagnostic yield in cases of craniofacial abnormalities, including those of the eye and ear, and a lower diagnostic yield in cases of gastrointestinal and genitourinary abnormalities. In addition, higher rates of rehabilitation therapy and gastrostomy were observed in WGS-diagnosed infants than in undiagnosed infants.
Conclusion
This prospective cohort study assessed the usefulness of trio-WGS following chromosomal analysis for diagnosing MCAs in the NICU and revealed improvements in the diagnostic yield and clinical utility of WGS.
2.A Randomized, Open-Label, Phase II Study Comparing Pemetrexed Plus Cisplatin Followed by Maintenance Pemetrexed versus Pemetrexed Alone in Patients with Epidermal Growth Factor Receptor (EGFR)-Mutant Non-small Cell Lung Cancer after Failure of First-Line EGFR Tyrosine Kinase Inhibitor: KCSG-LU12-13
Kwai Han YOO ; Su Jin LEE ; Jinhyun CHO ; Ki Hyeong LEE ; Keon Uk PARK ; Ki Hwan KIM ; Eun Kyung CHO ; Yoon Hee CHOI ; Hye Ryun KIM ; Hoon Gu KIM ; Heui June AHN ; Ha Yeon LEE ; Hwan Jung YUN ; Jin Hyoung KANG ; Jaeheon JEONG ; Moon Young CHOI ; Sin Ho JUNG ; Jong Mu SUN ; Se Hoon LEE ; Jin Seok AHN ; Keunchil PARK ; Myung Ju AHN
Cancer Research and Treatment 2019;51(2):718-726
PURPOSE: The optimal cytotoxic regimens have not been established for patients with non-small cell lung cancer (NSCLC) who develop disease progression on first-line epidermal growth factor receptor tyrosine kinase inhibitor (EGFR-TKI). MATERIALS AND METHODS: We conducted a multi-center randomized phase II trial to compare the clinical outcomes between pemetrexed plus cisplatin combination therapy followed by maintenance pemetrexed (PC) and pemetrexed monotherapy (P) after failure of first-line EGFR-TKI. The primary objective was progression-free survival (PFS), and secondary objectives included overall response rate (ORR), overall survival (OS), health-related quality of life (HRQOL), and safety and toxicity profiles. RESULTS: A total of 96 patientswere randomized, and 91 patientswere treated at 14 centers in Korea. The ORR was 34.8% (16/46) for the PC arm and 17.8% (8/45) for the P arm (p=0.066). With 23.4 months of follow-up, the median PFS was 5.4 months in the PC arm and 6.4 months in the P arm (p=0.114). The median OS was 17.9 months and 15.7 months in PC and P arms, respectively (p=0.787). Adverse events ≥ grade 3 were reported in 12 patients (26.1%) in the PC arm and nine patients (20.0%) in the P arm (p=0.491). The overall time trends of HRQOL were not significantly different between the two arms. CONCLUSION: The outcomes of pemetrexed therapy in NSCLC patients with disease progression after firstline EGFR-TKI might not be improved by adding cisplatin.
Arm
;
Carcinoma, Non-Small-Cell Lung
;
Cisplatin
;
Disease Progression
;
Disease-Free Survival
;
Epidermal Growth Factor
;
Follow-Up Studies
;
Humans
;
Korea
;
Lung Neoplasms
;
Lung
;
Pemetrexed
;
Protein-Tyrosine Kinases
;
Quality of Life
;
Receptor, Epidermal Growth Factor
;
Tyrosine
3.Erratum: Valproic Acid Induces Telomerase Reverse Transcriptase Expression during Cortical Development.
Ki Chan KIM ; Chang Soon CHOI ; Edson Luck T GONZALES ; Darine Froy N MABUNGA ; Sung Hoon LEE ; Se Jin JEON ; Ram HWANGBO ; Minha HONG ; Jong Hoon RYU ; Seol Heui HAN ; Geon Ho BAHN ; Chan Young SHIN
Experimental Neurobiology 2017;26(6):399-399
In the ‘Acknowledgements’ section on page 263 of the original article, the grant number was incorrectly stated.
4.Valproic Acid Induces Telomerase Reverse Transcriptase Expression during Cortical Development.
Ki Chan KIM ; Chang Soon CHOI ; Edson Luck T GONZALES ; Darine Froy N MABUNGA ; Sung Hoon LEE ; Se Jin JEON ; Ram HWANGBO ; Minha HONG ; Jong Hoon RYU ; Seol Heui HAN ; Geon Ho BAHN ; Chan Young SHIN
Experimental Neurobiology 2017;26(5):252-265
The valproic acid (VPA)-induced animal model is one of the most widely utilized environmental risk factor models of autism. Autism spectrum disorder (ASD) remains an insurmountable challenge among neurodevelopmental disorders due to its heterogeneity, unresolved pathological pathways and lack of treatment. We previously reported that VPA-exposed rats and cultured rat primary neurons have increased Pax6 expression during post-midterm embryonic development which led to the sequential upregulation of glutamatergic neuronal markers. In this study, we provide experimental evidence that telomerase reverse transcriptase (TERT), a protein component of ribonucleoproteins complex of telomerase, is involved in the abnormal components caused by VPA in addition to Pax6 and its downstream signals. In embryonic rat brains and cultured rat primary neural progenitor cells (NPCs), VPA induced the increased expression of TERT as revealed by Western blot, RT-PCR, and immunostainings. The HDAC inhibitor property of VPA is responsible for the TERT upregulation. Chromatin immunoprecipitation revealed that VPA increased the histone acetylation but blocked the HDAC1 binding to both Pax6 and Tert genes. Interestingly, the VPA-induced TERT overexpression resulted to sequential upregulations of glutamatergic markers such as Ngn2 and NeuroD1, and inter-synaptic markers such as PSD-95, α-CaMKII, vGluT1 and synaptophysin. Transfection of Tert siRNA reversed the effects of VPA in cultured NPCs confirming the direct involvement of TERT in the expression of those markers. This study suggests the involvement of TERT in the VPA-induced autistic phenotypes and has important implications for the role of TERT as a modulator of balanced neuronal development and transmission in the brain.
Acetylation
;
Animals
;
Autism Spectrum Disorder
;
Autistic Disorder
;
Blotting, Western
;
Brain
;
Chromatin Immunoprecipitation
;
Embryonic Development
;
Female
;
Histones
;
Models, Animal
;
Neurodevelopmental Disorders
;
Neurons
;
Phenotype
;
Population Characteristics
;
Pregnancy
;
Rats
;
Ribonucleoproteins
;
Risk Factors
;
RNA, Small Interfering
;
Stem Cells
;
Synaptophysin
;
Telomerase*
;
Transfection
;
Up-Regulation
;
Valproic Acid*
5.Sex Differences in Autism-Like Behavioral Phenotypes and Postsynaptic Receptors Expression in the Prefrontal Cortex of TERT Transgenic Mice.
Ki Chan KIM ; Kyu Suk CHO ; Sung Min YANG ; Edson Luck GONZALES ; Schley VALENCIA ; Pyeong Hwa EUN ; Chang Soon CHOI ; Darine Froy MABUNGA ; Ji Woon KIM ; Judy Kyoungju NOH ; Hee Jin KIM ; Se Jin JEON ; Seol Heui HAN ; Geon Ho BAHN ; Chan Young SHIN
Biomolecules & Therapeutics 2017;25(4):374-382
Autism spectrum disorder (ASD) remains unexplained and untreated despite the high attention of research in recent years. Aside from its various characteristics is the baffling male preponderance over the female population. Using a validated animal model of ASD which is the telomerase reverse transcriptase overexpressing mice (TERT-tg), we conducted ASD-related behavioral assessments and protein expression experiments to mark the difference between male and females of this animal model. After statistically analyzing the results, we found significant effects of TERT overexpression in sociability, social novelty preference, anxiety, nest building, and electroseizure threshold in the males but not their female littermates. Along these differences are the male-specific increased expressions of postsynaptic proteins which are the NMDA and AMPA receptors in the prefrontal cortex. The vGluT1 presynaptic proteins, but not GAD, were upregulated in both sexes of TERT-tg mice, although it is more significantly pronounced in the male group. Here, we confirmed that the behavioral effect of TERT overexpression in mice was male-specific, suggesting that the aberration of this gene and its downstream pathways preferentially affect the functional development of the male brain, consistent with the male preponderance in ASD.
Animals
;
Anxiety
;
Autism Spectrum Disorder
;
Brain
;
Female
;
Humans
;
Male
;
Mice
;
Mice, Transgenic*
;
Models, Animal
;
N-Methylaspartate
;
Phenotype*
;
Prefrontal Cortex*
;
Receptors, AMPA
;
Sex Characteristics*
;
Synapses
;
Telomerase
6.Sex Differences in Autism-Like Behavioral Phenotypes and Postsynaptic Receptors Expression in the Prefrontal Cortex of TERT Transgenic Mice.
Ki Chan KIM ; Kyu Suk CHO ; Sung Min YANG ; Edson Luck GONZALES ; Schley VALENCIA ; Pyeong Hwa EUN ; Chang Soon CHOI ; Darine Froy MABUNGA ; Ji Woon KIM ; Judy Kyoungju NOH ; Hee Jin KIM ; Se Jin JEON ; Seol Heui HAN ; Geon Ho BAHN ; Chan Young SHIN
Biomolecules & Therapeutics 2017;25(4):374-382
Autism spectrum disorder (ASD) remains unexplained and untreated despite the high attention of research in recent years. Aside from its various characteristics is the baffling male preponderance over the female population. Using a validated animal model of ASD which is the telomerase reverse transcriptase overexpressing mice (TERT-tg), we conducted ASD-related behavioral assessments and protein expression experiments to mark the difference between male and females of this animal model. After statistically analyzing the results, we found significant effects of TERT overexpression in sociability, social novelty preference, anxiety, nest building, and electroseizure threshold in the males but not their female littermates. Along these differences are the male-specific increased expressions of postsynaptic proteins which are the NMDA and AMPA receptors in the prefrontal cortex. The vGluT1 presynaptic proteins, but not GAD, were upregulated in both sexes of TERT-tg mice, although it is more significantly pronounced in the male group. Here, we confirmed that the behavioral effect of TERT overexpression in mice was male-specific, suggesting that the aberration of this gene and its downstream pathways preferentially affect the functional development of the male brain, consistent with the male preponderance in ASD.
Animals
;
Anxiety
;
Autism Spectrum Disorder
;
Brain
;
Female
;
Humans
;
Male
;
Mice
;
Mice, Transgenic*
;
Models, Animal
;
N-Methylaspartate
;
Phenotype*
;
Prefrontal Cortex*
;
Receptors, AMPA
;
Sex Characteristics*
;
Synapses
;
Telomerase
7.Comparison of perioperative and short-term outcomes between robotic and conventional laparoscopic surgery for colonic cancer: a systematic review and meta-analysis.
Sungwon LIM ; Jin Hee KIM ; Se Jin BAEK ; Seon Hahn KIM ; Seon Heui LEE
Annals of Surgical Treatment and Research 2016;90(6):328-339
PURPOSE: Reports from several case series have described the feasibility and safety of robotic surgery (RS) for colonic cancer. Experience is still limited in robotic colonic surgery, and a few meta-analysis has been conducted to integrate the results for colon cancer specifically. We conducted a systematic review of the available evidence comparing the surgical safety and efficacy of RS with that of conventional laparoscopic surgery (CLS) for colonic cancer. METHODS: We searched English databases (MEDLINE, Embase, and Cochrane Library), and Korean databases (KoreaMed, KMbase, KISS, RISS, and KisTi). Dichotomous variables were pooled using the risk ratio, and continuous variables were pooled using the mean difference (MD). RESULTS: The present study found that the RS group had a shorter time to resumption of a regular diet (MD, -0.62 days; 95% CI, -0.97 to -0.28), first passage of flatus (MD, -0.44 days; 95% CI, -0.66 to -0.23) and defecation (MD, -0.62 days; 95% CI, -0.77 to -0.47). Also, RS was associated with a shorter hospital stay (MD, -0.69 days; 95% CI, -1.12 to -0.26), a lower estimated blood loss (MD, -19.49 mL; 95% CI, -27.10 to -11.89) and a longer proximal margin (MD, 2.29 cm; 95% CI, 1.11-3.47). However, RS was associated with a longer surgery time (MD, 51.00 minutes; 95% CI, 39.38-62.62). CONCLUSION: We found that the potential benefits of perioperative and short-term outcomes for RS than for CLS. For a more accurate understanding of RS for colonic cancer patients, robust comparative studies and randomized clinical trials are required.
Colon*
;
Colonic Neoplasms*
;
Defecation
;
Diet
;
Flatulence
;
Humans
;
Laparoscopy*
;
Length of Stay
;
Odds Ratio
;
Robotic Surgical Procedures
8.Effect of Prophylactic Palivizumab on Admission Due to Respiratory Syncytial Virus Infection in Former Very Low Birth Weight Infants with Bronchopulmonary Dysplasia.
Young Mi HAN ; Hyun Joo SEO ; Seo Heui CHOI ; Yu Jin JUNG ; So Yoon AHN ; Hye Soo YOO ; Se In SUNG ; Jae Won SHIM ; Yeon Kyung LEE ; Sun Young KO ; Son Moon SHIN ; Jong Hee HWANG ; Jang Hoon LEE ; Byung Min CHOI ; Eun Sun KIM ; Ji Hyun JEON ; Sung Shin KIM ; Yun Sil CHANG ; Won Soon PARK
Journal of Korean Medical Science 2015;30(7):924-931
The aim of this study was to observe the effects of prophylactic palivizumab on hospitalization secondary to respiratory syncytial virus (RSV) infection (RSVhospitalization) in former very low birth weight infants (VLBWI) with bronchopulmonary dysplasia (BPD). This study also sought to identify the risk factors of RSVhospitalizationin this particular infant population. A prospective observational study was conducted between September 2007 and April 2008 in seven Korean hospitals. Children with a history of very low birth weight, a diagnosis of BPD and who were <2 yr old at the onset of the RSV season were included in this study. Palivizumab injections were administered monthly for a maximum of five months during the RSV season. RSVhospitalization rates were reviewed, and RSVhospitalization rates between subgroups were categorized by gestational age, birth weight, and duration of ventilator care. A total of 90 subjects completed the follow-up interviews. The mean gestational age at birth was 26.1+/-1.7 weeks, and the mean birth weight was 889.4+/-222.2 g. The incidence of RSVhospitalization in the study population was 8.9% (8/90), and the mean hospital stay was 11.0+/-5.5 days, including one death. There were no statistically significant differences in the patients' demographic characteristics or risk factors for RSV hospitalization. When subgroup analyses were conducted, there were still no statistically significant differences. The administration of palivizumab prophylaxis during the entire RSV season is important in VLBWI with BPD, regardless of their gestational age and birth weight, or previous ventilator dependency.
Antibiotic Prophylaxis/*methods
;
Antiviral Agents/*therapeutic use
;
Birth Weight
;
Bronchopulmonary Dysplasia/*complications
;
Female
;
Gestational Age
;
Hospitalization/statistics & numerical data
;
Humans
;
Infant
;
Infant, Newborn
;
Infant, Premature
;
*Infant, Very Low Birth Weight
;
Length of Stay
;
Male
;
Palivizumab/*therapeutic use
;
Prospective Studies
;
Respiratory Syncytial Virus Infections/drug therapy/*epidemiology/prevention & control
;
Respiratory Syncytial Viruses/drug effects
;
Risk
;
Risk Factors
9.Age Is the Strongest Effector for the Relationship between Estimated Glomerular Filtration Rate and Coronary Artery Calcification in Apparently Healthy Korean Adults.
Hyun Beom CHAE ; Shin Yeoung LEE ; Nam Hee KIM ; Ki Joong HAN ; Tae Hoon LEE ; Choel Min JANG ; Kyung Mo YOO ; Hae Jung PARK ; Min Kyung LEE ; Won Seon JEON ; Se Eun PARK ; Heui Soo MOON ; Cheol Young PARK ; Won Young LEE ; Ki Won OH ; Sung Woo PARK ; Eun Jung RHEE
Endocrinology and Metabolism 2014;29(3):312-319
BACKGROUND: Chronic kidney disease (CKD) is considered one of the most common risk factors for cardiovascular disease. Coronary artery calcification (CAC) is a potential mechanism that explains the association between renal function and cardiovascular mortality. We aimed to evaluate the association between renal function and CAC in apparently healthy Korean subjects. METHODS: A total of 23,617 participants in a health-screening program at Kangbuk Samsung Hospital were included in the study. Estimated glomerular filtration rate (eGFR) was assessed using the Cockcroft-Gault equation. Coronary artery calcium score (CACS) was measured via multidetector computed tomography. Subjects were divided into three groups according to the CKD Staging system with eGFR grade: stage 1, eGFR > or =90 mL/min/1.73 m2; stage 2, eGFR 60 to 89 mL/min/1.73 m2; and stage 3, eGFR 30 to 59 mL/min/1.73 m2. RESULTS: The mean age of the participants was 41.4 years and the mean eGFR was 103.6+/-21.7 mL/min/1.73 m2. Hypertension and diabetes were noted in 43.7% and 5.5% of the participants, respectively. eGFR showed a weakly negative but significant association with CACS in bivariate correlation analysis (r=-0.076, P<0.01). Mean CACS significantly increased from CKD stage 1 to 3. The proportion of subjects who had CAC significantly increased from CKD stage 1 to 3. Although the odds ratio for CAC significantly increased from stage 1 to 3 after adjustment for confounding factors, this significance was reversed when age was included in the model. CONCLUSION: In early CKD, renal function negatively correlated with the degree of CAC in Korean subjects. Age was the strongest effector for this association.
Adult*
;
Calcium
;
Cardiovascular Diseases
;
Coronary Vessels*
;
Glomerular Filtration Rate*
;
Humans
;
Hypertension
;
Mortality
;
Multidetector Computed Tomography
;
Odds Ratio
;
Renal Insufficiency, Chronic
;
Risk Factors
10.Transcriptional Upregulation of Plasminogen Activator Inhibitor-1 in Rat Primary Astrocytes by a Proteasomal Inhibitor MG132.
Kyu Suk CHO ; Kyoung Ja KWON ; Se Jin JEON ; So Hyun JOO ; Ki Chan KIM ; Jae Hoon CHEONG ; Geon Ho BAHN ; Hahn Young KIM ; Seol Heui HAN ; Chan Young SHIN ; Sung Il YANG
Biomolecules & Therapeutics 2013;21(2):107-113
Plasminogen activator inhibitor-1 (PAI-1) is a member of serine protease inhibitor family, which regulates the activity of tissue plasminogen activator (tPA). In CNS, tPA/PAI-1 activity is involved in the regulation of a variety of cellular processes such as neuronal development, synaptic plasticity and cell survival. To gain a more insights into the regulatory mechanism modulating tPA/PAI-1 activity in brain, we investigated the effects of proteasome inhibitors on tPA/PAI-1 expression and activity in rat primary astrocytes, the major cell type expressing both tPA and PAI-1. We found that submicromolar concentration of MG132, a cell permeable peptide-aldehyde inhibitor of ubiquitin proteasome pathway selectively upregulates PAI-1 expression. Upregulation of PAI-1 mRNA as well as increased PAI-1 promoter reporter activity suggested that MG132 transcriptionally increased PAI-1 expression. The induction of PAI-1 downregulated tPA activity in rat primary astrocytes. Another proteasome inhibitor lactacystin similarly increased the expression of PAI-1 in rat primary astrocytes. MG132 activated MAPK pathways as well as PI3K/Akt pathways. Inhibitors of these signaling pathways reduced MG132-mediated upregulation of PAI-1 in varying degrees and most prominent effects were observed with SB203580, a p38 MAPK pathway inhibitor. The regulation of tPA/PAI-1 activity by proteasome inhibitor in rat primary astrocytes may underlie the observed CNS effects of MG132 such as neuroprotection.
Animals
;
Astrocytes*
;
Brain
;
Cell Survival
;
Humans
;
Neurons
;
p38 Mitogen-Activated Protein Kinases
;
Plasminogen Activator Inhibitor 1
;
Plasminogen Activators*
;
Plasminogen*
;
Plastics
;
Proteasome Endopeptidase Complex
;
Proteasome Inhibitors
;
Rats*
;
RNA, Messenger
;
Serine Proteases
;
Tissue Plasminogen Activator
;
Ubiquitin
;
Up-Regulation*

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