1.Expression, purification and bioactivity analysis of a recombinant fusion protein rHSA-hFGF21 in Pichia pastoris.
Tiantian HUANG ; Jianying QI ; Ganggang YANG ; Xianlong YE
Chinese Journal of Biotechnology 2022;38(9):3419-3432
		                        		
		                        			
		                        			Human fibroblast growth factor 21 (hFGF21) has become a candidate drug for regulating blood glucose and lipid metabolism. The poor stability and short half-life of hFGF21 resulted in low target tissue availability, which hampers its clinical application. In this study, the hFGF21 was fused with a recombinant human serum albumin (HSA), and the resulted fusion protein rHSA-hFGF21 was expressed in Pichia pastoris. After codon optimization, the recombinant gene fragment rHSA-hFGF21 was inserted into two different vectors (pPIC9k and pPICZαA) and transformed into three different strains (X33, GS115 and SMD1168), respectively. We investigated the rHSA-hFGF21 expression levels in three different strains and screened an engineered strain X33-pPIC9K-rHSA-hFGF21 with the highest expression level. To improve the production efficiency of rHSA-hFGF21, we optimized the shake flask fermentation conditions, such as the OD value, methanol concentration and induction time. After purification by hollow fiber membrane separation, Blue affinity chromatography and Q ion exchange chromatography, the purity of the rHSA-hFGF21 protein obtained was 98.18%. Compared to hFGF21, the biostabilities of rHSA-hFGF21, including their resistance to temperature and trypsinization were significantly enhanced, and its plasma half-life was extended by about 27.6 times. Moreover, the fusion protein rHSA-hFGF21 at medium and high concentration showed a better ability to promote glucose uptake after 24 h of stimulation in vitro. In vivo animal studies showed that rHSA-hFGF21 exhibited a better long-term hypoglycemic effect than hFGF21 in type 2 diabetic mice. Our results demonstrated a small-scale production of rHSA-hFGF21, which is important for large-scale production and clinical application in the future.
		                        		
		                        		
		                        		
		                        			Animals
		                        			;
		                        		
		                        			Blood Glucose/metabolism*
		                        			;
		                        		
		                        			Diabetes Mellitus, Experimental
		                        			;
		                        		
		                        			Fibroblast Growth Factors
		                        			;
		                        		
		                        			Humans
		                        			;
		                        		
		                        			Hypoglycemic Agents/metabolism*
		                        			;
		                        		
		                        			Methanol/metabolism*
		                        			;
		                        		
		                        			Mice
		                        			;
		                        		
		                        			Pichia/metabolism*
		                        			;
		                        		
		                        			Recombinant Fusion Proteins
		                        			;
		                        		
		                        			Recombinant Proteins/metabolism*
		                        			;
		                        		
		                        			Saccharomycetales
		                        			;
		                        		
		                        			Serum Albumin/metabolism*
		                        			;
		                        		
		                        			Serum Albumin, Human/metabolism*
		                        			
		                        		
		                        	
2.Production of high-purity recombinant human vascular endothelial growth factor (rhVEGF165) by Pichia pastoris.
Weijie ZHOU ; Fengmei WU ; Dongsheng YAO ; Chunfang XIE
Chinese Journal of Biotechnology 2021;37(11):4083-4094
		                        		
		                        			
		                        			Vascular endothelial growth factor (VEGF165) is a highly specific vascular endothelial growth factor that can be used to treat many cardiovascular diseases. The development of anti-tumor drugs and disease detection reagents requires highly pure VEGF165 (at least 95% purity). To date, the methods for heterologous expression and purification of VEGF165 require multiple purification steps, but the product purity remains to be low. In this study, we optimized the codons of the human VEGF165 gene (vegf165) according to the yeast codon preference. Based on the Pichia pastoris BBPB vector, we used the Biobrick method to construct a five-copy rhVEGF165 recombinant expression vector using Pgap as the promoter. In addition, a histidine tag was added to the vector. Facilitated by the His tag and the heparin-binding domain of VEGF165, we were able to obtain highly pure rhVEGF165 (purity > 98%) protein using two-step affinity chromatography. The purified rhVEGF165 was biologically active, and reached a concentration of 0.45 mg/mL. The new design of the expression vector enables production of active and highly pure rhVEGF165 ) in a simplified purification process, the purity of the biologically active natural VEGF165 reached the highest reported to date.
		                        		
		                        		
		                        		
		                        			Codon/genetics*
		                        			;
		                        		
		                        			Humans
		                        			;
		                        		
		                        			Pichia/genetics*
		                        			;
		                        		
		                        			Recombinant Proteins/genetics*
		                        			;
		                        		
		                        			Saccharomycetales
		                        			;
		                        		
		                        			Vascular Endothelial Growth Factor A/genetics*
		                        			;
		                        		
		                        			Vascular Endothelial Growth Factors
		                        			
		                        		
		                        	
3.Development and evaluation of a novel method for rapid screening of Pichia pastoris strains capable of efficiently expressing recombinant proteins.
Yongan CHEN ; Qingyan YUAN ; Cheng LI ; Shuli LIANG ; Ying LIN
Chinese Journal of Biotechnology 2021;37(3):939-949
		                        		
		                        			
		                        			Pichia pastoris is one of the most widely used recombinant protein expression systems. In this study, a novel method for rapid screening of P. pastoris strains capable of efficiently expressing recombinant proteins was developed. Firstly, the ability to express recombinant proteins of the modified strain GS115-E in which a functional Sec63-EGFP (Enhanced green fluorescent protein) fusion protein replaced the endogenous endoplasmic reticulum transmembrane protein Sec63 was tested. Next, the plasmids carrying different copy numbers of phytase (phy) gene or xylanase (xyn) gene were transformed into GS115-E to obtain recombinant strains with different expression levels of phytase or xylanase, and the expression levels of EGFP and recombinant proteins in different strains were tested. Finally, a flow cytometer sorter was used to separate a mixture of cells with different phytase expression levels into sub-populations according to green fluorescence intensity. A good linear correlation was found between the fluorescence intensities of EGFP and the expression levels of the recombinant proteins in the recombinant strains (0.8<|R|<1). By using the flow cytometer, high-yielding P. pastoris cells were efficiently screened from a mixture of cells. The expression level of phytase of the selected high-fluorescence strains was 4.09 times higher than that of the low-fluorescence strains after 120 h of methanol induction. By detecting the EGFP fluorescence intensity instead of detecting the expression level and activity of the recombinant proteins in the recombinant strains, the method developed by the present study possesses the greatly improved performance of convenience and versatility in screening high-yielding P. pastoris strains. Combining the method with high-throughput screening instruments and technologies, such as flow cytometer and droplet microfluidics, the speed and throughput of this method will be further increased. This method will provide a simple and rapid approach for screening and obtaining P. pastoris with high abilities to express recombinant proteins.
		                        		
		                        		
		                        		
		                        			6-Phytase/genetics*
		                        			;
		                        		
		                        			Pichia/genetics*
		                        			;
		                        		
		                        			Plasmids
		                        			;
		                        		
		                        			Recombinant Proteins/genetics*
		                        			;
		                        		
		                        			Saccharomycetales
		                        			
		                        		
		                        	
4.Advances in metabolic engineering of non-conventional yeasts.
Liqiu SU ; Ge ZHANG ; Zhen YAO ; Peixin LIANG ; Zongjie DAI ; Qinhong WANG
Chinese Journal of Biotechnology 2021;37(5):1659-1676
		                        		
		                        			
		                        			Over the past 30 years, Yarrowia lipolytica, Kluyveromyces, Pichia, Candida, Hansenula and other non-conventional yeasts have attracted wide attention because of their desirable phenotypes, such as rapid growth, capability of utilizing multiple substrates, and stress tolerance. A variety of synthetic biology tools are being developed for exploitation of their unique phenotypes, making them potential cell factories for the production of recombinant proteins and renewable bio-based chemicals. This review summarizes the gene editing tools and the metabolic engineering strategies recently developed for non-conventional yeasts. Moreover, the challenges and future perspectives for developing non-conventional yeasts into efficient cell factories for the production of useful products through metabolic engineering are discussed.
		                        		
		                        		
		                        		
		                        			Gene Editing
		                        			;
		                        		
		                        			Metabolic Engineering
		                        			;
		                        		
		                        			Pichia/genetics*
		                        			;
		                        		
		                        			Synthetic Biology
		                        			;
		                        		
		                        			Yarrowia/genetics*
		                        			;
		                        		
		                        			Yeasts
		                        			
		                        		
		                        	
5.Expression of a Lactobacillus casei L-lactate dehydrogenase mutant in Pichia pastoris for asymmetric reduction of phenylpyruvate.
Ting ZHANG ; Jianfang LI ; Die HU ; Chuang LI ; Bochun HU ; Minchen WU
Chinese Journal of Biotechnology 2020;36(5):959-968
		                        		
		                        			
		                        			To improve the productivity of L-phenyllactic acid (L-PLA), L-LcLDH1(Q88A/I229A), a Lactobacillus casei L-lactate dehydrogenase mutant, was successfully expressed in Pichia pastoris GS115. An NADH regeneration system in vitro was then constructed by coupling the recombinant (re) LcLDH1(Q88A/I229A) with a glucose 1-dehydrogenase for the asymmetric reduction of phenylpyruvate (PPA) to L-PLA. SDS-PAGE analysis showed that the apparent molecular weight of reLcLDH1(Q88A/I229A) was 36.8 kDa. And its specific activity was 270.5 U/mg, 42.9-fold higher than that of LcLDH1 (6.3 U/mg). The asymmetric reduction of PPA (100 mmol/L) was performed at 40 °C and pH 5.0 in an optimal biocatalytic system, containing 10 U/mL reLcLDH1(Q88A/I229A), 1 U/mL SyGDH, 2 mmol/L NAD⁺ and 120 mmol/L D-glucose, producing L-PLA with 99.8% yield and over 99% enantiomeric excess (ee). In addition, the space-time yield (STY) and average turnover frequency (aTOF) were as high as 9.5 g/(L·h) and 257.0 g/(g·h), respectively. The high productivity of reLcLDH1(Q88A/I229A) in the asymmetric reduction of PPA makes it a promising biocatalyst in the preparation of L-PLA.
		                        		
		                        		
		                        		
		                        			L-Lactate Dehydrogenase
		                        			;
		                        		
		                        			genetics
		                        			;
		                        		
		                        			Lactobacillus casei
		                        			;
		                        		
		                        			enzymology
		                        			;
		                        		
		                        			genetics
		                        			;
		                        		
		                        			Phenylpyruvic Acids
		                        			;
		                        		
		                        			metabolism
		                        			;
		                        		
		                        			Pichia
		                        			;
		                        		
		                        			genetics
		                        			;
		                        		
		                        			Recombinant Proteins
		                        			;
		                        		
		                        			genetics
		                        			;
		                        		
		                        			metabolism
		                        			
		                        		
		                        	
6.Oligomerization triggered by foldon to enhance the catalytic efficiency of feruloyl esterase.
Lei ZHANG ; Linchao LEI ; Guangya ZHANG ; Xialan LI
Chinese Journal of Biotechnology 2019;35(5):816-826
		                        		
		                        			
		                        			A new method to express oligomerized feruloyl esterase (FAE) in Pichia pastoris GS115 to improve the catalytic efficiency was developed. It was realized by fusing the foldon domain at the C-terminus of FAE, and the fusion protein was purified by histidine tag. Fusion of the feruloyl esterase with the foldon domain resulted spontaneously forming a trimer FAE to improve the catalytic performance. The oligomerized FAE and monomeric FAE were obtained by purification. The apparent molecular weight of the oligomerized FAE was about 110 kDa, while the monomeric FAE about 40 kDa, and the optimum temperature of the oligomerized FAE was 50 °C, which is the same as the monomeric one. The optimal pH of the oligomerized FAE is 5.0, while the optimal pH of the monomer FAE is 6.0. When compared with the monomeric ones, the catalytic efficiency (kcat/Km) of the oligomerized FAE increased 7.57-folds. The catalytic constant (kcat) of the oligomerized FAE increased 3.42-folds. The oligomerized FAE induced by foldon have advantages in the catalytic performances, which represents a simple and effective enzyme-engineering tool. The method proposed here for improving the catalytic efficiency of FAE would have great potentials for improving the catalytic efficiency of other enzymes.
		                        		
		                        		
		                        		
		                        			Carboxylic Ester Hydrolases
		                        			;
		                        		
		                        			metabolism
		                        			;
		                        		
		                        			Catalysis
		                        			;
		                        		
		                        			Molecular Weight
		                        			;
		                        		
		                        			Pichia
		                        			;
		                        		
		                        			genetics
		                        			;
		                        		
		                        			metabolism
		                        			;
		                        		
		                        			Polymerization
		                        			;
		                        		
		                        			Protein Engineering
		                        			;
		                        		
		                        			Substrate Specificity
		                        			
		                        		
		                        	
7.Development of a purification tag to produce thermostable fused protein.
Weixin ZHAO ; Song LIU ; Liming LIU ; Jian CHEN ; Guocheng DU
Chinese Journal of Biotechnology 2019;35(4):626-635
		                        		
		                        			
		                        			Self-assembling amphipathic peptides (SAPs) have alternating hydrophilic and hydrophobic residues and can affect the thermal stabilities and catalytic properties of the fused enzymes. In this study, a novel multifunctional tag, S1vw (HNANARARHNANARARHNANARARHNARARAR) was developed to modify fused enzymes. After fusing S1vw at the enzymes/proteins N-terminus through a PT-linker, the crude enzymatic activities of polygalacturonate lyase and lipoxygenase were enhanced 3.1- and 1.89-fold, respectively, compared to the wild-type proteins. The relative fluorescence intensity of the green fluorescent protein was enhanced 16.22-fold. All the three S1vw fusions could be purified by nickel column with high purities and acceptable recovery rates. Moreover, S1vw also induced the thermostabilities enhancement of the fusions, with polygalacturonate lyase and lipoxygenase fusions exhibiting 2.16- and 3.2-fold increase compared with the corresponding wild-type, respectively. In addition, S1vw could enhance the production yield of green fluorescent protein in Escherichia coli and Bacillus subtilis while the production of GFP and its S1vw fusion changed slightly in Pichia pastoris. These results indicated that S1vw could be used as a multifunctional tag to benefit the production, thermal stability and purification of the fusion protein in prokaryotic expression system.
		                        		
		                        		
		                        		
		                        			Escherichia coli
		                        			;
		                        		
		                        			Green Fluorescent Proteins
		                        			;
		                        		
		                        			Hydrophobic and Hydrophilic Interactions
		                        			;
		                        		
		                        			Peptides
		                        			;
		                        		
		                        			Pichia
		                        			;
		                        		
		                        			Recombinant Fusion Proteins
		                        			;
		                        		
		                        			metabolism
		                        			
		                        		
		                        	
8.Characterization and structure of a novel thermostable glucoamylase from Talaromyces leycettanus JCM12802.
Yujie GUO ; Tao TU ; Jin QIU ; Lige TONG ; Huiying LUO ; Bin YAO
Chinese Journal of Biotechnology 2019;35(4):616-625
		                        		
		                        			
		                        			Glucoamylase is a critical ingredient for saccharification in the starch decomposition, and widely used in food, pharmaceutical and fermentation industries. Glucoamylases are usually thermostable and have peak activities at high temperature, as required for the industrial process of glucose production. In this study, a glucoamylase gene belonging to the glycoside hydrolase (GH) family 15, Tlga15A, was cloned from Talaromyces leycettanus JCM12802, and successfully expressed in Pichia pastoris GS115. Recombinant glucoamylase TlGA showed optimal activities at pH 4.5 and 75 °C. The result of thermostability analysis showed that TlGA retained above 70% activity after incubating for 1 h at 65 °C, and 43% residual activity after 30 min at 70 °C. Moreover, TlGA had high resistance to most metal ions and chemical reagents tested. Various starch substrates could be hydrolyzed by TlGA, including soluble starch (255.6±15.3) U/mg, amylopectin (342.3±24.7) U/mg, glycogen (185.4±12.5) U/mg, dextrin (423.3±29.3) U/mg and pullulan (65.7±8.1) U/mg. The primary, secondary and tertiary structures of glucoamylase were further analyzed. The low ratio of Gly in the primary structure and low exposed nonpolarity solvent accessible surface in the tertiary structure may be the main reasons for TlGA's thermostability. These results show that TlGA is great promising for potential use in the commercial production of glucose syrups. Moreover, this research will provide knowledge and innovating ideas for the improvement of glucoamylase thermostability.
		                        		
		                        		
		                        		
		                        			Cloning, Molecular
		                        			;
		                        		
		                        			Enzyme Stability
		                        			;
		                        		
		                        			Glucan 1,4-alpha-Glucosidase
		                        			;
		                        		
		                        			Hydrogen-Ion Concentration
		                        			;
		                        		
		                        			Pichia
		                        			;
		                        		
		                        			Talaromyces
		                        			;
		                        		
		                        			Temperature
		                        			
		                        		
		                        	
9.Heterologous expression and characterization of Aspergillus oryzae acidic protease in Pichia pastoris.
Xiaoping YUE ; Peng CHEN ; Yueming ZHU ; Yan ZENG ; Hanmin LIU ; Hongyan LIU ; Min WANG ; Yuanxia SUN
Chinese Journal of Biotechnology 2019;35(3):415-424
		                        		
		                        			
		                        			Acid protease, an important aspartic protease, has been widely used in food, pharmaceutical and tanning industries. To promote the research and application of acid protease, an acid protease gene (pepA) from Aspergillus oryzae was obtained from fermented soy based on metagenome sequencing, and then cloned and transformed into Pichia pastoris GS115 for heterologous expression. The characteristic of recombinant PepA was also investigated. The activity of acid protease in the culture supernatant of P. pastoris was 50.62 U/mL. The molecular mass of PepA was about 50 kDa, and almost no other proteins in the supernatant were observed, as shown by SDS-PAGE. The optimum pH and temperature of PepA were determined as pH 4.5 and 50 ℃. Mn²⁺ and Cu²⁺ enhanced the activity of PepA, whereas Fe³⁺, Fe²⁺ and Ca² had inhibitory effects on its activity. The above findings can provide guidance for heterologous expression and industrial application of acid protease from Aspergillus oryzae.
		                        		
		                        		
		                        		
		                        			Aspergillus oryzae
		                        			;
		                        		
		                        			Cloning, Molecular
		                        			;
		                        		
		                        			Endopeptidases
		                        			;
		                        		
		                        			Hydrogen-Ion Concentration
		                        			;
		                        		
		                        			Pichia
		                        			;
		                        		
		                        			Recombinant Proteins
		                        			;
		                        		
		                        			Temperature
		                        			
		                        		
		                        	
10.Preparation and characterization of recombinant human-source collagen.
Zengmiao HOU ; Xiaoying LI ; Min LI ; Jinfang YANG ; Xiaolin YANG ; Jinli ZHAO
Chinese Journal of Biotechnology 2019;35(2):319-326
		                        		
		                        			
		                        			This study aimed to obtain a recombinant human-source collagen for industrialization. First, based on the Gly-X-Y sequence of human type I collagen, we optimized the hydrophilic Gly-X-Y collagen peptide, designed the human collagen amino acid sequence and the corresponding nucleotide sequence. Next, the expression vector pPIC9K-COL was constructed via endonuclease digestion technology. We obtained an engineering strain of human-source collagen by electrotransforming Pichia pastoris, and then it was fermented, purified and identified. As a result, the expression level reached 4.5 g/L and the purity was over 95%. After amino acid N-terminal sequencing, molecular weight analysis, amino acid analysis and collagenase degradation test, we confirmed that the obtained collagen was consistent with designed primary structure of human-source collagen. After freeze-drying, we analyzed the collagen by scanning electron microscope and cell cytotoxicity, confirming that the collagen has porous fiber reticular structure and superior cytocompatibility. This indicates that human-source collagen has potential to be applied as biomedical material. In conclusion, we successfully obtained the expected human-source collagen and laid a foundation to its further application.
		                        		
		                        		
		                        		
		                        			Amino Acid Sequence
		                        			;
		                        		
		                        			Biocompatible Materials
		                        			;
		                        		
		                        			Collagen
		                        			;
		                        		
		                        			analysis
		                        			;
		                        		
		                        			Freeze Drying
		                        			;
		                        		
		                        			Humans
		                        			;
		                        		
		                        			Pichia
		                        			;
		                        		
		                        			Recombinant Proteins
		                        			
		                        		
		                        	
            
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