1.Rapid verification of the effect of fim family genes on the motility of Acinetobacter baumannii based on homologous recombination
Qianzi Sun ; Nianzhi Ning ; Hui Wang
Acta Universitatis Medicinalis Anhui 2024;59(1):8-14
Objective :
To use linear PCR fragment containing antibiotic resistance cassette to carry out homologous recombination and replacement of target gene fragment of Acinetobacter baumannii to achieve rapid gene knockout and functional verification.
Methods:
Acinetobacter baumannii Ab4294 was used as the research object,and the upper (901 bp) and lower ( 1 028 bp) reaches of fim gene cluster (4 980 bp in length) were amplified by PCR , which was used as the recombinant homologous arm.Kanamycin antibiotic resistance cassette (KanR) was ampli- fied from pUC57 plasmid.The above three fragments were connected by overlapping extended PCR technique,and the connected fragments were transformed into wild Acinetobacter baumannii strains.The gene deletion mutant was screened,and the plasmid complement strain was constructed.The phenotype of the obtained strains was identi- fied,and the function of fim gene cluster was explored.
Results :
A mutant strain of Acinetobacter baumannii Ab4294 with deletion of fim gene cluster was successfully constructed by homologous substitution of linear PCR frag- ment containing antibiotic resistance cassette.Compared with the wild strain,the growth curve of the deletion strain had no significant difference ,and the rubbing ability significantly decreased ,and the phenotype recovered after complementing the gene cluster.
Conclusion
The fim family genes of Acinetobacter baumannii Ab4294 is success- fully knocked out by homologous substitution of linear PCR fragment containing antibiotic resistance cassette,which encodes the product involved in the motile movement of Acinetobacter baumannii.
2.Analysis of the virulence and genetic differences of carbapenem-resistant Acinetobacter baumannii epidemic clones
Xinlin HUANG ; Nianzhi NING ; Boan LI ; Hui WANG
Chinese Journal of Preventive Medicine 2024;58(5):649-655
Objective:To evaluate the virulence levels of carbapenem-resistant Acinetobacter baumannii ST191, ST195, and ST208, and to analyze the differences in virulence factors among these epidemic clones. Methods:The study involved the genomic sequencing of 233 Acinetobacter baumannii strains that were isolated from the Fifth Medical Center of the Chinese People′s Liberation Army General Hospital (North Hospital) between 2011 and 2019. The genomic data was cross-referenced with the Virulence Factor Database (VFDB) to examine the presence of virulence genes in the strains. Furthermore, a Galleria mellonella infection survival model was used to evaluate the virulence levels of the strains, and the association between virulence levels and virulence genes was analyzed. Results:The study included 38 strains of the ST191 clone, 104 strains of the ST195 clone, and 91 strains of the ST208 clone. In the Galleria mellonella infection survival experiment, the average mortality rate for ST191 was 23.0%, with 3 (7.9%) highly virulent strains. For ST195, the average mortality rate was 53.0%, with 34 (32.7%) highly virulent strains. For ST208, the average mortality rate was 47.0%, with 20 (21.9%) highly virulent strains. There was a significant statistical difference in mortality rates between ST191 and ST195 ( χ 2=13.9, P<0.001) as well as between ST191 and ST208 ( χ2=15.2, P<0.001). A comparison of the strains with the VFDB revealed significant differences in the virulence genes carried by the clones. Specifically, the type Ⅵ secretion system-related genes ( clpV/tssH, hcp/tssD, tagX, tssA, tssB, tssC, tssE, tssF, tssG, tssK, ssL, tssM) and the sugar transferase gene ACICU_RS00475 were found to be universally absent in ST191 strains (0%) while being prevalent in ST195 (100.0%) and ST208 (>82.0%) strains. Statistical analysis revealed an association between the mortality rate of the clones and the presence of virulence genes( clpV/tssHP<0.001, hcp/tssDP=0.001, tagXP<0.001, tssAP<0.001, tssBP=0.001, tssCP=0.001, tssE P=0.001, tssF P=0.001, tssGP<0.001, tssKP<0.001, tssLP<0.001, tssMP=0.001, ACICU_RS00475 P=0.001). Conclusion:Among the carbapenem-resistant epidemic clones of Acinetobacter baumannii, the ST191 clone shows lower mortality rates in Galleria mellonella, possibly because of the lack of type Ⅵ secretion system and sugar transferase genes.
3.Analysis of the virulence and genetic differences of carbapenem-resistant Acinetobacter baumannii epidemic clones
Xinlin HUANG ; Nianzhi NING ; Boan LI ; Hui WANG
Chinese Journal of Preventive Medicine 2024;58(5):649-655
Objective:To evaluate the virulence levels of carbapenem-resistant Acinetobacter baumannii ST191, ST195, and ST208, and to analyze the differences in virulence factors among these epidemic clones. Methods:The study involved the genomic sequencing of 233 Acinetobacter baumannii strains that were isolated from the Fifth Medical Center of the Chinese People′s Liberation Army General Hospital (North Hospital) between 2011 and 2019. The genomic data was cross-referenced with the Virulence Factor Database (VFDB) to examine the presence of virulence genes in the strains. Furthermore, a Galleria mellonella infection survival model was used to evaluate the virulence levels of the strains, and the association between virulence levels and virulence genes was analyzed. Results:The study included 38 strains of the ST191 clone, 104 strains of the ST195 clone, and 91 strains of the ST208 clone. In the Galleria mellonella infection survival experiment, the average mortality rate for ST191 was 23.0%, with 3 (7.9%) highly virulent strains. For ST195, the average mortality rate was 53.0%, with 34 (32.7%) highly virulent strains. For ST208, the average mortality rate was 47.0%, with 20 (21.9%) highly virulent strains. There was a significant statistical difference in mortality rates between ST191 and ST195 ( χ 2=13.9, P<0.001) as well as between ST191 and ST208 ( χ2=15.2, P<0.001). A comparison of the strains with the VFDB revealed significant differences in the virulence genes carried by the clones. Specifically, the type Ⅵ secretion system-related genes ( clpV/tssH, hcp/tssD, tagX, tssA, tssB, tssC, tssE, tssF, tssG, tssK, ssL, tssM) and the sugar transferase gene ACICU_RS00475 were found to be universally absent in ST191 strains (0%) while being prevalent in ST195 (100.0%) and ST208 (>82.0%) strains. Statistical analysis revealed an association between the mortality rate of the clones and the presence of virulence genes( clpV/tssHP<0.001, hcp/tssDP=0.001, tagXP<0.001, tssAP<0.001, tssBP=0.001, tssCP=0.001, tssE P=0.001, tssF P=0.001, tssGP<0.001, tssKP<0.001, tssLP<0.001, tssMP=0.001, ACICU_RS00475 P=0.001). Conclusion:Among the carbapenem-resistant epidemic clones of Acinetobacter baumannii, the ST191 clone shows lower mortality rates in Galleria mellonella, possibly because of the lack of type Ⅵ secretion system and sugar transferase genes.
4.Mechanism and influencing factors of natural transformation in bacteria.
Chinese Journal of Biotechnology 2018;34(8):1297-1305
Horizontal gene transfer contributes to the spread of antibiotic-resistance cassettes, the distribution of toxin-encoding phages and the transfer of pathogenicity islands. Natural transformation, which is the process of competent cells to uptake free DNA from environment and to recombine this DNA into the chromosome, is a mode of horizontal gene transfer. Natural transformation promotes the spread of antibiotic-resistance cassettes among different bacteria, resulting in the emergence of antibiotic resistant bacteria. The emergence of antibiotic resistant pathogens poses an enormous threat to the treatment of infections. Natural transformation could occur in many bacteria, but the mechanism many be different in different bacteria. Also, the inducer and efficiency of natural transformation in different bacteria are influenced by various factors. This review focuses on the mechanism and influencing factors of natural transformation in bacteria.


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