1.Gene Expression Analyses of Mutant Flammulina velutipes (Enokitake Mushroom) with Clogging Phenomenon
Ju-Ri WOO ; Doo-Ho CHOI ; Muhammed Taofiq HAMZA ; Kyung-Oh DOH ; Chang-Yoon LEE ; Yeon-Sik CHOO ; Sangman LEE ; Jong-Guk KIM ; Heeyoun BUNCH ; Young-Bae SEU
Mycobiology 2022;50(5):366-373
Regulation of proper gene expression is important for cellular and organismal survival, maintenance, and growth. Abnormal gene expression, even for a single critical gene, can thwart cellular integrity and normal physiology to cause diseases, aging, and death. Therefore, gene expression profiling serves as a powerful tool to understand the pathology of diseases and to cure them. In this study, the difference in gene expression in Flammulina velutipes was compared between the wild type (WT) mushroom and the mutant one with clogging phenomenon. Differentially expressed transcripts were screened to identify the candidate genes responsible for the mutant phenotype using the DNA microarray analysis. A total of 88 genes including 60 upregulated and 28 downregulated genes were validated using the realtime quantitative PCR analysis. In addition, proteomic differences between the WT and mutant mushroom were analyzed using two–dimensional gel electrophoresis and matrixassisted laser desorption/ionization-time of flight (MALDI-TOF). Interestingly, the genes identified by these genomic and proteomic analyses were involved in stress response, translation, and energy/sugar metabolism, including HSP70, elongation factor 2, and pyruvate kinase. Together, our data suggest that the aberrant expression of these genes attributes to the mutant clogging phenotype. We propose that these genes can be targeted to foster normal growth in F. velutipes.
2.Emergency Department Visits for Panic Attacks and Ambient Air Pollution: A Time-Stratified Case-Crossover Analysis
Young Kyung MOON ; Wonyun LEE ; Sehhyun OH ; Ho KIM ; Woojae MYUNG ; Hyewon LEE ; Doh Kwan KIM
Journal of Korean Neuropsychiatric Association 2021;60(3):213-222
Objectives:
This study investigates the association between short-term exposure to air pollutants and panic attacks requiring emergency department (ED) visits.
Methods:
We identified 1926 patients who visited EDs in Seoul with panic attacks as the primary cause during the period from 2008 to 2014. We estimated short-term exposure to particles <2.5 μm (PM2.5), particles <10 μm (PM10), nitrogen dioxide (NO2), sulfur dioxide (SO2), ozone (O3), and carbon monoxide (CO). We applied a time-stratified case-crossover study design and conducted a conditional logistic regression analysis to assess the association between air pollutants levels and ED visits due to panic attacks.
Results:
Increasing O3 concentration was significantly associated with an increased risk of panic attacks requiring ED visits (odds ratio: 1.15; 95% confidence interval: 1.04–1.27) on the same day of exposure. This association was robust to the sensitivity analysis using two pollutant models.
Conclusion
Our results show that short-term exposure to elevated O3 concentration is associated with the exacerbation of panic attacks. This finding strongly suggests the detrimental effects of O3 on major public health problems and provides insights for further research to investigate the causal associations between air pollution and poor mental health.
3.Emergency Department Visits for Panic Attacks and Ambient Air Pollution: A Time-Stratified Case-Crossover Analysis
Young Kyung MOON ; Wonyun LEE ; Sehhyun OH ; Ho KIM ; Woojae MYUNG ; Hyewon LEE ; Doh Kwan KIM
Journal of Korean Neuropsychiatric Association 2021;60(3):213-222
Objectives:
This study investigates the association between short-term exposure to air pollutants and panic attacks requiring emergency department (ED) visits.
Methods:
We identified 1926 patients who visited EDs in Seoul with panic attacks as the primary cause during the period from 2008 to 2014. We estimated short-term exposure to particles <2.5 μm (PM2.5), particles <10 μm (PM10), nitrogen dioxide (NO2), sulfur dioxide (SO2), ozone (O3), and carbon monoxide (CO). We applied a time-stratified case-crossover study design and conducted a conditional logistic regression analysis to assess the association between air pollutants levels and ED visits due to panic attacks.
Results:
Increasing O3 concentration was significantly associated with an increased risk of panic attacks requiring ED visits (odds ratio: 1.15; 95% confidence interval: 1.04–1.27) on the same day of exposure. This association was robust to the sensitivity analysis using two pollutant models.
Conclusion
Our results show that short-term exposure to elevated O3 concentration is associated with the exacerbation of panic attacks. This finding strongly suggests the detrimental effects of O3 on major public health problems and provides insights for further research to investigate the causal associations between air pollution and poor mental health.
4.Effect of Exercise Intensity on Unfolded Protein Response in Skeletal Muscle of Rat.
Kihoon KIM ; Yun Hye KIM ; Sung Hye LEE ; Man Joong JEON ; So Young PARK ; Kyung Oh DOH
The Korean Journal of Physiology and Pharmacology 2014;18(3):211-216
Endoplasmic reticulum (ER) stress, unfolded protein response (UPR), and mitochondrial biogenesis were assessed following varying intensities of exercise training. The animals were randomly assigned to receive either low- (LIT, n=7) or high intensity training (HIT, n=7), or were assigned to a control group (n=7). Over 5 weeks, the animals in the LIT were exercised on a treadmill with a 10degrees incline for 60 min at a speed of 20 m/min group, and in the HIT group at a speed of 34 m/min for 5 days a week. No statistically significant differences were found in the body weight, plasma triglyceride, and total cholesterol levels across the three groups, but fasting glucose and insulin levels were significantly lower in the exercise-trained groups. Additionally, no statistically significant differences were observed in the levels of PERK phosphorylation in skeletal muscles between the three groups. However, compared to the control and LIT groups, the level of BiP was lower in the HIT group. Compared to the control group, the levels of ATF4 in skeletal muscles and CHOP were significantly lower in the HIT group. The HIT group also showed increased PGC-1alpha mRNA expression in comparison with the control group. Furthermore, both of the trained groups showed higher levels of mitochondrial UCP3 than the control group. In summary, we found that a 5-week high-intensity exercise training routine resulted in increased mitochondrial biogenesis and decreased ER stress and apoptotic signaling in the skeletal muscle tissue of rats.
Animals
;
Body Weight
;
Cholesterol
;
Endoplasmic Reticulum
;
Fasting
;
Glucose
;
Insulin
;
Mitochondria
;
Organelle Biogenesis
;
Muscle, Skeletal*
;
Phosphorylation
;
Plasma
;
Rats*
;
RNA, Messenger
;
Triglycerides
;
Unfolded Protein Response*
5.Effects of chromium chloride addition on coloration and mechanical properties of 3Y-TZP.
Gye Jeong OH ; Yoon Jeong SEO ; Kwi Dug YUN ; Hyun Pil LIM ; Sang Won PARK ; Kyung Ku LEE ; Tae Kwan LIM ; Doh Jae LEE
The Journal of Korean Academy of Prosthodontics 2011;49(2):120-127
PURPOSE: The purpose of this study was to examine the effects of chromium chloride addition on coloration, mechanical property and microstructure of 3Y-TZP. MATERIALS AND METHODS: Chromium chloride was weighed as 0.06, 0.12, and 0.25 wt% and each measured amount was dissolved in alcohol. ZrO2 powder was mixed with each of the individual slurry to prepare chromium doped zirconia specimen. The color, physical properties and microstructure were observed after the zirconia specimen were sintered at 1450degrees C. In order to evaluate the color, spectrophotometer was used to analyze the value of L*, C*, a* and b*, after placing the specimen on a white plate, and measured according to the International Commission on Illumination (CIE) standard, Illuminant D65 and SCE system. The density was measured in the Archimedes method, while microstructures were evaluated by using the scanning electron microscopy (SEM) and XRD. Fracture toughness was calculated Vickers indentation method and indentation size was measured by using the optical microscope. The data were analyzed with 1-way ANOVA test (alpha= 0.05). The Tukey multiple comparison test was used for post hoc analysis. RESULTS: 1. Chromium chloride rendered zirconia a brownish color. While chromium chloride content was increased, the color of zirconia was changed from brownish to brownish-red. 2. Chromium chloride content was increased; density of the specimen was decreased. 3. More chromium chloride in the ratio showed increase size of grains. 4. But the addition of chromium chloride did not affect the crystal phase of zirconia, and all specimens showed tetragonal phase. 5. The chromium chloride in zirconia did not showed statistically significant difference in fracture toughness, but addition of 0.25 wt% showed a statistically significant difference (P<.05). CONCLUSION: Based on the above results, this study suggests that chromium chlorides can make colored zirconia while adding in a liquid form. The new colored zirconia showed a slight difference in color to that of the natural tooth, nevertheless this material can be used as an all ceramic core material.
Ceramics
;
Edible Grain
;
Chlorides
;
Chromium
;
Chromium Compounds
;
Humans
;
Lighting
;
Microscopy, Electron, Scanning
;
Tooth
;
Zirconium
6.Ovarian cancer related gene targeting with large circular antisense library.
Kyung Oh DOH ; Geun Soo CHUN ; Jae Chul SIM ; Hoe Saeng YANG
Korean Journal of Obstetrics and Gynecology 2009;52(7):724-733
OBJECTIVE: The aim of this study is to find out the genes which are related to ovarian cancer cell growth using large circular antisense library. METHODS: Clones for antisense library were uni-directionally sub-cloned into pBS SK (-) vector. LC-antisense molecules were then purified from the culture supernatants of the bacterial competent cells superinfected with M13K07 helper bacteriophages. The LC-antisense library to 240 unigene clone was constructed and utilized in the identification of genes functionally involved in the growth of ovarian cancer cells. RESULTS: The 17 numbers out of the 240 numbers of the antisense library exerted a marked inhibitory effect on the growth of SK-OV 3. CONCLUSION: The putative functional categorization of each gene was then conducted via public databases. These candidates may be used as target genes for drug development or adjuvant of conventional chemotherapeutic drugs.
Bacteriophages
;
Clone Cells
;
Estrone
;
Gene Targeting
;
Genetic Therapy
;
Ovarian Neoplasms
7.Effects of TGF-beta1 Ribbon Antisense on CCl4-induced Liver Fibrosis.
The Korean Journal of Physiology and Pharmacology 2008;12(1):1-6
Ribbon-type antisense oligonucleotide to TGF-beta1(TGF-beta1 RiAS) was designed and tested to prevent or resolve the fibrotic changes induced by CCl4 injection. When Hepa1c1c7 cells were transfected with TGF-beta1 RiAS, the level of TGF-beta1 mRNA was effectively reduced. TGF-beta1 RiAS, mismatched RiAS, and normal saline were each injected to mice via tail veins. When examined for the biochemical effects on the liver, TGF-beta1 mRNA levels were significantly reduced only in the TGF-beta1 RiAS-treated group. The results of immunohistochemical studies showed that TGF-beta1 RiAS prevented the accumulation of collagen and alpha-smooth muscle actin, but could not resolve established fibrosis. These results indicate that ribbon antisense to TGF-beta1 with efficient uptake can effectively prevent fibrosis of the liver.
Actins
;
Animals
;
Collagen
;
Fibrosis
;
Liver
;
Liver Cirrhosis
;
Mice
;
Muscles
;
RNA, Messenger
;
Transforming Growth Factor beta1
;
Veins
8.Reduced-intensity Umbilical Cord Blood Transplantation in Adult Acute Myeloid Leukemia: Report of Four Cases.
So Young CHONG ; Moon Ju JANG ; Myung Seo KANG ; Jin Young BAEK ; Sei Kyung CHANG ; Young Kil CHOI ; Doyeon OH
Korean Journal of Hematology 2006;41(3):208-214
The outcome after unrelated cord blood transplantation (CBT) is similar to that of matched unrelated bone marrow transplantation in children, and the results of CBT in adult patients has recently shown improvement. In addition, the use of reduced-intensity conditioning regimens for CBT has shown stable engraftment and reduced treatment-related mortality (TRM). From May 2005 to Jan 2006, four adult patients with acute myelogenous leukemia were treated with CBT after reduced-intensity conditioning at our hospital. The mean age of patients was 53.8 yrs, and all patients received 2 HLA antigen mismatched single unit cord blood. The infused mean cell dose was 2.85 x 10(7)/kg for total nucleated cells and 0.72 x 10(5)/kg for CD34+ cells. All patients had engraftment. The mean number of days to WBC and platelet engraftment was D+20.3 and D+60.3, respectively. There was no TRM within 100 days after transplantation. At the last follow up, three of the four patients were alive. One patient transplanted in first complete remisson is alive in remission at day 413, but the other patients transplanted in advanced disease all relapsed. Reduced-intensity CBT is a feasible approach in selected adult patients with acute myeloid leukemia.
Adult*
;
Blood Platelets
;
Bone Marrow Transplantation
;
Child
;
Fetal Blood*
;
Follow-Up Studies
;
Humans
;
Leukemia, Myeloid, Acute*
;
Mortality
;
Umbilical Cord*
9.Correlation Between Levels of N-terminal Pro-B-Type Natriuretic Peptide and Degrees of Heart Failure.
Bong Geun SONG ; Eun Seok JEON ; Yong Hoon KIM ; Min Kyung KANG ; Joon Hyung DOH ; Phil Ho KIM ; Seok Jin AHN ; Hye Lim OH ; Hyun Joong KIM ; Ji Dong SUNG ; Sang Chol LEE ; Hyeon Cheol GWON ; June Soo KIM ; Duk Kyung KIM ; Sang Hoon LEE ; Kyung Pyo HONG ; Jeong Euy PARK ; Soo Youn LEE ; Jong Koo LEE
The Korean Journal of Internal Medicine 2005;20(1):26-32
BACKGROUND: The N-terminal fragment of pro Brain Natriuretic Peptide (NT-pro BNP) is a neuro-hormone synthesized in the cardiac ventricles in response to increased wall tension. The purpose of this study was to assess the correlation between the NT-pro BNP levels and the New York Heart Association function class (NYHA Fc) of dyspnea and echocardiographic findings for the patients who visited our cardiology departments. METHODS: From October, 2002 to April, 2003, serum NT-pro BNP levels were measured in 348 patients who visited the Samsung Medical Center and the Jong Koo Lee Heart Clinic. RESULTS: The NT-pro BNP levels were increased with the progression of NYHA Fc of dyspnea (p< 0.001 by ANOVA), the increase in the systolic left ventricular internal dimension (p< 0.05), and the decrease in the ejection fraction (p< 0.01). For the NYHA Fc I patients, the NT-pro BNP levels were positively correlated with age (p< 0.001) and left atrial size (p< 0.001). For the patients with ischemic heart disease, the NT-pro BNP levels were also positively correlated with the NYHA Fc (p< 0.001 by ANOVA). The NT-pro BNP levels were increased with the increase in the systolic (p< 0.001) and diastolic pressure (p=0.017), the left ventricular internal dimension as well as the decrease in the ejection fraction (p< 0.001). The area under the receiver operating characteristic (ROC) curve for the NT-pro BNP levels was 0.994 (95% confidence interval, 0.979-0.999), and the most reliable cut-off level for the NT-pro BNP was 293.6 pg/mL. CONCLUSION: The NT-pro BNP levels were positively correlated with the NYHA Fc of dyspnea and the systolic dysfunction for the patients who visited our cardiology departments. A 300 pg/mL value for the NT-pro BNP cut-off point appears to be a sensitive level to differentiate dyspnea originating from an ailing heart or not for the patients who visited our cardiology departments.
Dyspnea/physiopathology
;
Female
;
Heart Failure, Congestive/*blood/*physiopathology
;
Humans
;
Male
;
Middle Aged
;
Nerve Tissue Proteins/*blood
;
Peptide Fragments/*blood
;
Prospective Studies
;
*Severity of Illness Index
;
Stroke Volume/physiology
;
Systole/physiology
;
Ventricular Dysfunction, Left/physiopathology
10.What is the Key Step in Muscle Fatty Acid Oxidation after Change of Plasma Free Fatty Acids Level in Rats?.
Kyung Oh DOH ; Sang Dug SUH ; Jong Yeon KIM
The Korean Journal of Physiology and Pharmacology 2005;9(3):173-177
The purpose of this study was to discern the critical point in skeletal muscle fatty acid oxidation by changing plasma free fatty acids (FFA) level in rat. In the study, 3 key steps in lipid oxidation were examined after changing plasma FFA level by acipimox. The rates of both palmitate and palmitoyl- carnitine oxidation were decreased by decrease of plasma FFA level, however, carnitine palmitoyl transferase (CPT) 1 activity was not changed, suggesting CPT1 activity may not be involved in the fatty acid oxidation at the early phase of plasma FFA change. In the fasted rats, beta-hydroxy acyl-CoA dehydrogenase (beta-HAD) activity was depressed to a similar extent as palmitate oxidation by a decrease of plasma FFA level. This suggested that beta-oxidation might be an important process to regulate fatty acid oxidation at the early period of plasma FFA change. Citrate synthase activity was not altered by the change of plasma FFA level. In conclusion, the critical step in fatty acids oxidation of skeletal muscles by the change of plasma FFA level by acipimox in fasting rats might be the beta-oxidation step rather than CPT1 and TCA cycle pathways.
Acyl-CoA Dehydrogenase
;
Animals
;
Carnitine
;
Citrate (si)-Synthase
;
Fasting
;
Fatty Acids
;
Fatty Acids, Nonesterified*
;
Muscle, Skeletal
;
Plasma*
;
Rats*
;
Transferases

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