1.The Immunome of Colon Cancer: Functional In Silico Analysis of Antigenic Proteins Deduced from IgG Microarray Profiling.
Johana A LUNA CORONELL ; Khulan SERGELEN ; Philipp HOFER ; István GYURJÁN ; Stefanie BREZINA ; Peter HETTEGGER ; Gernot LEEB ; Karl MACH ; Andrea GSUR ; Andreas WEINHÄUSEL
Genomics, Proteomics & Bioinformatics 2018;16(1):73-84
Characterization of the colon cancer immunome and its autoantibody signature from differentially-reactive antigens (DIRAGs) could provide insights into aberrant cellular mechanisms or enriched networks associated with diseases. The purpose of this study was to characterize the antibody profile of plasma samples from 32 colorectal cancer (CRC) patients and 32 controls using proteins isolated from 15,417 human cDNA expression clones on microarrays. 671 unique DIRAGs were identified and 632 were more highly reactive in CRC samples. Bioinformatics analyses reveal that compared to control samples, the immunoproteomic IgG profiling of CRC samples is mainly associated with cell death, survival, and proliferation pathways, especially proteins involved in EIF2 and mTOR signaling. Ribosomal proteins (e.g., RPL7, RPL22, and RPL27A) and CRC-related genes such as APC, AXIN1, E2F4, MSH2, PMS2, and TP53 were highly enriched. In addition, differential pathways were observed between the CRC and control samples. Furthermore, 103 DIRAGs were reported in the SEREX antigen database, demonstrating our ability to identify known and new reactive antigens. We also found an overlap of 7 antigens with 48 "CRC genes." These data indicate that immunomics profiling on protein microarrays is able to reveal the complexity of immune responses in cancerous diseases and faithfully reflects the underlying pathology.
Adult
;
Aged
;
Aged, 80 and over
;
Biomarkers, Tumor
;
genetics
;
immunology
;
metabolism
;
Case-Control Studies
;
Colonic Neoplasms
;
immunology
;
metabolism
;
Computational Biology
;
methods
;
Computer Simulation
;
Female
;
Gene Expression Profiling
;
Gene Expression Regulation, Neoplastic
;
Humans
;
Immunoglobulin G
;
immunology
;
Male
;
Middle Aged
;
Protein Array Analysis
;
methods
2.Changes in serum YKL-40 level and humoral immune function and their significance in children with recurrent pneumonia.
Wei-Yin MA ; Shao PENG ; Ting ZHANG
Chinese Journal of Contemporary Pediatrics 2017;19(4):425-429
OBJECTIVETo investigate the changes in serum YKL-40 level and humoral immune function and their significance in children with recurrent pneumonia.
METHODSBlood samples were collected from 30 children with recurrent pneumonia (recurrent pneumonia group), 30 children with acute pneumonia (acute pneumonia group), and 30 healthy children (control group). Serum YKL-40 levels were measured by enzyme-linked immunosorbent assay. The correlation between serum YKL-40 level and laboratory indices related to humoral immune function was analyzed. The receiver operating characteristic (ROC) curve was used to analyze the diagnostic value of serum YKL-40 level for recurrent pneumonia.
RESULTSThe recurrent pneumonia group had a significantly higher serum YKL-40 level than the acute pneumonia and control groups (P<0.05). The acute pneumonia group had a significantly higher serum YKL-40 level than the control group (P<0.05). Serum levels of IgG and complement 4 in the recurrent pneumonia group were significantly lower than in the acute pneumonia group (P<0.05). Serum YKL-40 level was negatively correlated with serum IgG level (r=-0.309, P=0.047) and serum complement 4 level (r=-0.324, P=0.039). The area under the ROC curve of serum YKL-40 level for diagnosing recurrent pneumonia was 0.958 (95%CI: 0.921-0.994).
CONCLUSIONSHumoral immune function is low in children with recurrent pneumonia. Serum YKL-40 may be involved in the occurrence of recurrent pneumonia and can be used as a reference index for diagnosing recurrent pneumonia.
Child, Preschool ; Chitinase-3-Like Protein 1 ; blood ; Complement C4 ; analysis ; Female ; Humans ; Immunity, Humoral ; Immunoglobulin G ; blood ; Male ; Pneumonia ; immunology ; Recurrence
3.Correlations between the CagA Antigen and Serum Levels of Anti-Helicobacter pylori IgG and IgA in Children.
Ji Hyun SEO ; Chun Woo LIM ; Ji Sook PARK ; Jung Sook YEOM ; Jae Young LIM ; Jin Su JUN ; Hyang Ok WOO ; Hee Shang YOUN ; Seung Chul BAIK ; Woo Kon LEE ; Myung Je CHO ; Kwang Ho RHEE
Journal of Korean Medical Science 2016;31(3):417-422
We tested correlations between anti-Helicobacter pylori IgG and IgA levels and the urease test, anti-CagA protein antibody, degree of gastritis, and age. In total, 509 children (0-15 years) were enrolled. Subjects were stratified as 0-4 years (n = 132), 5-9 years (n = 274), and 10-15 years (n = 103) and subjected to the urease test, histopathology, ELISA, and western blot using whole-cell lysates of H. pylori strain 51. The positivity rate in the urease test (P = 0.003), the degree of chronic gastritis (P = 0.021), and H. pylori infiltration (P < 0.001) increased with age. The median titer for anti-H. pylori IgG was 732.5 IU/mL at 0-4 years, 689.0 IU/mL at 5-9 years, and 966.0 IU/mL at 10-15 years (P < 0.001); the median titer for anti-H. pylori IgA was 61.0 IU/mL at 0-4 years, 63.5 IU/mL at 5-9 years, and 75.0 IU/mL at 10-15 years (P < 0.001). The CagA-positivity rate was 26.5% at 0-4 years, 36.5% at 5-9 years, and 46.6% at 10-15 years for IgG (P = 0.036), and 11.3% at 0-4 years, 18.6% at 5-9 years, and 23.3% at 10-15 years for IgA (P < 0.001). Anti-H. pylori IgG and IgA titers increased with the urease test grade, chronic gastritis degree, active gastritis, and H. pylori infiltration. Presence of CagA-positivity is well correlated with a high urease test grade and high anti-H. pylori IgG/IgA levels.
Adolescent
;
Antibodies, Bacterial/*blood
;
Antigens, Bacterial/*analysis/immunology
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Bacterial Proteins/*analysis/immunology/metabolism
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Blotting, Western
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Child
;
Child, Preschool
;
Chronic Disease
;
Enzyme-Linked Immunosorbent Assay
;
Female
;
Gastritis/pathology
;
Helicobacter Infections/blood/microbiology/*pathology
;
Helicobacter pylori/isolation & purification/*metabolism
;
Humans
;
Immunoglobulin A/*blood
;
Immunoglobulin G/*blood
;
Infant
;
Infant, Newborn
;
Male
;
Severity of Illness Index
;
Urease/metabolism
4.Painful immunoglobulin G4-related thyroiditis treated by total thyroidectomy.
Ihn Suk LEE ; Jung Uee LEE ; Kwan Ju LEE ; Yi Sun JANG ; Jong Min LEE ; Hye Soo KIM
The Korean Journal of Internal Medicine 2016;31(2):399-402
No abstract available.
Adult
;
Biomarkers/analysis
;
Biopsy
;
Diagnosis, Differential
;
Female
;
Goiter/complications/diagnostic imaging/immunology/*surgery
;
Humans
;
Immunoglobulin G/*analysis
;
Pain/diagnosis/*etiology
;
Predictive Value of Tests
;
Thyroid Gland/diagnostic imaging/immunology/pathology/*surgery
;
*Thyroidectomy
;
Thyroiditis/complications/diagnostic imaging/immunology/*surgery
;
Treatment Outcome
;
Ultrasonography
5.A Survey on the Status of Hepatitis E Virus Infection Among Slaughterhouse Workers in South Korea.
Byung Seok KIM ; Hyun Sul LIM ; Kwan LEE ; Young Sun MIN ; Young Sil YOON ; Hye Sook JEONG
Journal of Preventive Medicine and Public Health 2015;48(1):53-61
OBJECTIVES: The seroprevalence of hepatitis E virus (HEV) among high-risk groups overseas is high, but studies in these groups are rare in South Korea. We conducted the present study from April to November 2012 to obtain data on the seroprevalence and associated risk factors for HEV among slaughterhouse workers in South Korea. METHODS: Slaughterhouse workers from 80 workplaces nationwide were surveyed in South Korea in 2012. The subjects comprised 1848 cases: 1434 slaughter workers and 414 residual products handlers. By visiting 80 slaughterhouses, which were mixed with 75 of which also performed residual products handling, we conducted a questionnaire survey for risk factors and obtained blood samples in order to determine the seropositivity and seroprevalence of HEV. Anti-HEV IgG and IgM were measured using HEV IgG and IgM enzyme-linked immunospecific assay kits and HEV antigen was measured by reverse transcription polymerase chain reaction (RT-PCR). RESULTS: The seropositivity of anti-HEV IgG was 33.5% (slaughter workers 32.8% and residual products handlers 36.2%), and among the seropositive individuals the seroprevalence of anti-HEV IgM was 0.5% (slaughter workers 0.5%, residual products handlers 0.7%). The response rate of HEV-antigen as measured by RT-PCR was 0.2%. Risk factors significantly related to anti-HEV IgG seropositivity were age, sex , and working duration (slaughter workers only). CONCLUSIONS: There were significant risk factors (sex, age, and working duration) for HEV identified in our study. All three positive cases for HEV-antigen by RT-PCR were related to pig slaughter but without statistical significance. To prevent HEV, an educational program and working guidelines may be needed for high risk groups.
Abattoirs
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Adult
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Aged
;
Enzyme-Linked Immunosorbent Assay
;
Female
;
Hepatitis Antibodies/blood
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Hepatitis E/*diagnosis/epidemiology/virology
;
Hepatitis E virus/genetics/*immunology/metabolism
;
Humans
;
Immunoglobulin G/blood
;
Immunoglobulin M/blood
;
Male
;
Middle Aged
;
Multivariate Analysis
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Prevalence
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Republic of Korea/epidemiology
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Reverse Transcriptase Polymerase Chain Reaction
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Risk Factors
;
Workplace
6.Standardization of ABO Antibody Titer Measurement at Laboratories in Korea.
Annals of Laboratory Medicine 2014;34(6):456-462
BACKGROUND: Measurement of the ABO antibody (Ab) titer is important in ABO-incompatible transplantation. However, to the best of our knowledge, no standard protocol or external survey program to measure the ABO Ab titer has been established in Korea. We investigated the current status of ABO Ab titer measurements at various laboratories in Korea and the impact of the protocol provided to reduce interlaboratory variations in the methods and results of ABO Ab titers. METHODS: The Korean external quality assessment of blood bank laboratories sent external survey samples with a questionnaire to 68 laboratories across Korea for the measurement of ABO Ab titers in May 2012. After 6 months, a second set of survey samples were sent with a standard protocol to 53 of the previously surveyed laboratories. The protocol recommended incubation at room temperature only and use of the indirect antihuman globulin method for the tube test as well as and the column agglutination test (CAT). RESULTS: Several interlaboratory variations were observed in the results, technical procedures, and methods selected for measurement. We found that 80.4% laboratories hoped to change their protocol to the provisional one. Additionally, CAT showed significantly lower variation among laboratories (P=0.006) than the tube test. CONCLUSIONS: Our study provides baseline data regarding the current status of ABO Ab titer measurement in Korea. The standard protocol and external survey were helpful to standardize the technical procedures and select methods for ABO Ab titer measurement.
ABO Blood-Group System/*immunology
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Agglutination Tests/*standards
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Antibodies/*analysis
;
Humans
;
Immunoglobulin G/analysis
;
Immunoglobulin M/analysis
;
Laboratories/*standards
;
Questionnaires
;
Republic of Korea
;
Temperature
7.Comparison of Total and IgG ABO Antibody Titers in Healthy Individuals by Using Tube and Column Agglutination Techniques.
Eun Su PARK ; Kyung Il JO ; Jeong Won SHIN ; Rojin PARK ; Tae Yoon CHOI ; Hae In BANG ; Gum Ran CHAI ; Soon Gyu YUN
Annals of Laboratory Medicine 2014;34(3):223-229
BACKGROUND: Most immune reactions related to transfusion and transplantation are caused by IgM ABO antibodies. However, IgG also plays an important role in these reactions. Therefore, a method to measure antibodies, including IgG, is necessary. We investigated ABO antibody titers of healthy individuals using a column agglutination technique (CAT) with or without dithiothreitol (DTT) and compared them with titers obtained using a conventional tube method. METHODS: Among healthy adults who underwent a medical examination, 180 individuals (60 with blood group A, 60 with group B, and 60 with group O) were selected. Antibody titrations were performed using the immediate spin (IS) tube, anti-human globulin (AHG) tube, and CAT with or without DTT methods. RESULTS: Higher median values of anti-B and anti-A titers in groups A and B individuals, respectively, were obtained using the IS method than using the AHG method. Higher values for group O individuals were obtained using the AHG method. Higher median titers of anti-B and anti-A in group O individuals were obtained using CAT without DTT than using the AHG method. Median titers of anti-B and anti-A in all blood groups were higher in CAT without DTT than in CAT with DTT, especially for group O individuals. CONCLUSIONS: We recommend CAT with and without DTT for titration of anti-A and anti-B, especially in group O individuals, to provide more sensitive results that include IgG data. Adjustment of insurance coverage of fees associated with antibody titration might be necessary, considering the actual cost of reagents and personnel.
ABO Blood-Group System/*immunology
;
Adult
;
*Agglutination Tests/instrumentation
;
Antibodies/*analysis/immunology
;
Female
;
Humans
;
Immunoglobulin G/immunology
;
Male
;
Middle Aged
8.Changes in the seroprevalence of IgG anti-hepatitis A virus between 2001 and 2013: experience at a single center in Korea.
Sung Jun CHUNG ; Tae Yeob KIM ; Sun Min KIM ; Min ROH ; Mi Yeon YU ; Jung Hoon LEE ; Changkyo OH ; Eun Young LEE ; Seung LEE ; Yong Cheol JEON ; Kyo Sang YOO ; Joo Hyun SOHN
Clinical and Molecular Hepatology 2014;20(2):162-167
BACKGROUND/AIMS: The incidence of symptomatic hepatitis A reportedly increased among 20- to 40-year-old Korean during the late 2000s. Vaccination against hepatitis A was commenced in the late 1990s and was extended to children aged <10 years. In the present study we analyzed the changes in the seroprevalence of IgG anti-hepatitis A virus (HAV) over the past 13 years. METHODS: Overall, 4903 subjects who visited our hospital between January 2001 and December 2013 were studied. The seroprevalence of IgG anti-HAV was analyzed according to age and sex. In addition, the seroprevalence of IgG anti-HAV was compared among 12 age groups and among the following time periods: early 2000s (2001-2003), mid-to-late 2000s (2006-2008), and early 2010s (2011-2013). The chi-square test for trend was used for statistical analysis. RESULTS: The seroprevalence of IgG anti-HAV did not differ significantly between the sexes. Furthermore, compared to the seroprevalence of IgG anti-HAV in the early 2000s and mid-to-late 2000s, that in the early 2010s was markedly increased among individuals aged 1-14 years and decreased among those aged 25-44 years (P<0.01). We also found that the seroprevalence of IgG anti-HAV in individuals aged 25-44 years in the early 2010s was lower than that in the early 2000s and mid-to-late 2000s. CONCLUSIONS: The number of symptomatic HAV infection cases in Korea is decreasing, but the seroprevalence of IgG anti-HAV is low in the active population.
Adolescent
;
Adult
;
Age Factors
;
Child
;
Child, Preschool
;
Female
;
Hepatitis A/diagnosis/*epidemiology
;
Hepatitis A Antibodies/*analysis
;
Hepatitis A virus/*immunology
;
Humans
;
Immunoglobulin G/*analysis
;
Infant
;
Infant, Newborn
;
Male
;
Middle Aged
;
Republic of Korea
;
Seroepidemiologic Studies
;
Sex Factors
;
Young Adult
9.Evaluation of a Novel Array-Based Toxoplasma, Rubella, Cytomegalovirus, and Herpes Simplex Virus IgG Enzyme Linked Immunosorbent Assay and Its Comparison with Virion/Serion Enzyme Linked Immunosorbent Assays.
Dongsheng WU ; Yuanjian WU ; Liuhong WANG ; Weidong XU ; Qiao ZHONG
Annals of Laboratory Medicine 2014;34(1):38-42
BACKGROUND: The dramatic increase in use of the IgG test for toxoplasma, rubella, cytomegalovirus (CMV), and herpes simplex virus (HSV) [TORCH] has led to the requirement for a high-efficiency method that can be used in the clinical laboratory. This study aimed to compare the results of BGI-Array ELISA TORCH IgG (BGI-GBI, China) screening method to those of Virion/Serion TORCH IgG ELISA (Virion/Serion, Germany). METHODS: Serum specimens (n=400) submitted for routine IgG testing by Virion/Serion ELISA were also tested using the BGI-Array ELISA method. The agreements of these two kinds of method were analyzed by kappa-coefficients calculation. RESULTS: Following repeat testing, the BGI-Array ELISA TORCH IgG assays demonstrated agreements of 99.5% (398/400 specimens), 98% (392/400 specimens), 99% (396/400 specimens), and 99.5% (398/400 specimens), respectively. The BGI-Array ELISA IgG assays provided results comparable to Virion/Serion ELISA results, with kappa-coefficients showing near-perfect agreement for the HSV (kappa=0.87), rubella (kappa=0.92) and CMV (kappa=0.93) and substantial agreement for the toxoplasma (kappa=0.80) IgG assays. The use of the BGI-Array ELISA TORCH IgG assays could reduce the turnaround time (1.5 hr vs. 5 hr by Virion/Serion ELISA for 100 specimens) and were easy to use. CONCLUSIONS: BGI-Array ELISA TORCH IgG shows a good agreement with Virion/Serion ELISA methods and is suitable for clinical application.
Antibodies, Viral/blood
;
Cytomegalovirus/immunology/*metabolism
;
*Enzyme-Linked Immunosorbent Assay
;
Humans
;
Immunoglobulin G/*analysis/blood
;
Protozoan Infections/diagnosis
;
Reagent Kits, Diagnostic
;
Rubella virus/immunology/*metabolism
;
Sensitivity and Specificity
;
Simplexvirus/immunology/*metabolism
;
Toxoplasma/immunology/*metabolism
;
Virion/*immunology/metabolism
;
Virus Diseases/diagnosis
10.Development of a novel enzyme-linked immunosorbent assay to detect anti-IgG against swine hepatitis E virus.
Won Jung LEE ; Min Kyoung SHIN ; Seung Bin CHA ; Han Sang YOO
Journal of Veterinary Science 2013;14(4):467-472
Swine hepatitis E virus (HEV) is widespread throughout pigs in both developing and industrialized countries. This virus is an important zoonotic agent and a public concern worldwide. Infected pigs are asymptomatic, so diagnosing swine HEV relies on detection of the virus or antibodies against the virus. However, several obstacles need to be overcome for effective and practical serological diagnosis. In this study, we developed an enzyme-linked immunosorbent assay (ELISA) that used a purified recombinant capsid protein of swine HEV. The potential clinical use of this assay was evaluated by comparing it with a commercial kit (Genelabs Technologies, Diagnostics, Singapore). Results of the ELISA were highly correlated with those of the commercial kit with a sensitivity of 97% and specificity of 95%. ROC (receiving operator characteristic) analysis of the ELISA data produced a value of 0.987 (95% CI, 0.977~0.998, p < 0.01). The cut-off value for the ELISA was also determined using negative pig sera. In summary, the HEV-specific ELISA developed in the present study appears to be both practical and economical.
Animals
;
Antibodies, Anti-Idiotypic/*analysis/blood/genetics
;
Capsid Proteins/*genetics/metabolism
;
Enzyme-Linked Immunosorbent Assay/*methods/veterinary
;
Hepatitis E/diagnosis/immunology/*veterinary/virology
;
Hepatitis E virus/genetics/*isolation & purification/metabolism
;
Immunoglobulin G/blood/genetics
;
ROC Curve
;
Recombinant Proteins/genetics/metabolism
;
Swine
;
Swine Diseases/*diagnosis/immunology/virology

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