1.The Immunome of Colon Cancer: Functional In Silico Analysis of Antigenic Proteins Deduced from IgG Microarray Profiling.
Johana A LUNA CORONELL ; Khulan SERGELEN ; Philipp HOFER ; István GYURJÁN ; Stefanie BREZINA ; Peter HETTEGGER ; Gernot LEEB ; Karl MACH ; Andrea GSUR ; Andreas WEINHÄUSEL
Genomics, Proteomics & Bioinformatics 2018;16(1):73-84
		                        		
		                        			
		                        			Characterization of the colon cancer immunome and its autoantibody signature from differentially-reactive antigens (DIRAGs) could provide insights into aberrant cellular mechanisms or enriched networks associated with diseases. The purpose of this study was to characterize the antibody profile of plasma samples from 32 colorectal cancer (CRC) patients and 32 controls using proteins isolated from 15,417 human cDNA expression clones on microarrays. 671 unique DIRAGs were identified and 632 were more highly reactive in CRC samples. Bioinformatics analyses reveal that compared to control samples, the immunoproteomic IgG profiling of CRC samples is mainly associated with cell death, survival, and proliferation pathways, especially proteins involved in EIF2 and mTOR signaling. Ribosomal proteins (e.g., RPL7, RPL22, and RPL27A) and CRC-related genes such as APC, AXIN1, E2F4, MSH2, PMS2, and TP53 were highly enriched. In addition, differential pathways were observed between the CRC and control samples. Furthermore, 103 DIRAGs were reported in the SEREX antigen database, demonstrating our ability to identify known and new reactive antigens. We also found an overlap of 7 antigens with 48 "CRC genes." These data indicate that immunomics profiling on protein microarrays is able to reveal the complexity of immune responses in cancerous diseases and faithfully reflects the underlying pathology.
		                        		
		                        		
		                        		
		                        			Adult
		                        			;
		                        		
		                        			Aged
		                        			;
		                        		
		                        			Aged, 80 and over
		                        			;
		                        		
		                        			Biomarkers, Tumor
		                        			;
		                        		
		                        			genetics
		                        			;
		                        		
		                        			immunology
		                        			;
		                        		
		                        			metabolism
		                        			;
		                        		
		                        			Case-Control Studies
		                        			;
		                        		
		                        			Colonic Neoplasms
		                        			;
		                        		
		                        			immunology
		                        			;
		                        		
		                        			metabolism
		                        			;
		                        		
		                        			Computational Biology
		                        			;
		                        		
		                        			methods
		                        			;
		                        		
		                        			Computer Simulation
		                        			;
		                        		
		                        			Female
		                        			;
		                        		
		                        			Gene Expression Profiling
		                        			;
		                        		
		                        			Gene Expression Regulation, Neoplastic
		                        			;
		                        		
		                        			Humans
		                        			;
		                        		
		                        			Immunoglobulin G
		                        			;
		                        		
		                        			immunology
		                        			;
		                        		
		                        			Male
		                        			;
		                        		
		                        			Middle Aged
		                        			;
		                        		
		                        			Protein Array Analysis
		                        			;
		                        		
		                        			methods
		                        			
		                        		
		                        	
2.Multiple Erythematous Plaques with Palpable Purpura in a Febrile Patient.
Dipali M KAPOOR ; Shan Xian LEE ; Michael Cs TAN
Annals of the Academy of Medicine, Singapore 2018;47(7):272-274
		                        		
		                        		
		                        		
		                        			Aged
		                        			;
		                        		
		                        			Biopsy
		                        			;
		                        		
		                        			methods
		                        			;
		                        		
		                        			Diagnosis, Differential
		                        			;
		                        		
		                        			Erythema
		                        			;
		                        		
		                        			diagnosis
		                        			;
		                        		
		                        			etiology
		                        			;
		                        		
		                        			Extremities
		                        			;
		                        		
		                        			pathology
		                        			;
		                        		
		                        			Fever
		                        			;
		                        		
		                        			complications
		                        			;
		                        		
		                        			Humans
		                        			;
		                        		
		                        			Immunoglobulin A
		                        			;
		                        		
		                        			analysis
		                        			;
		                        		
		                        			Male
		                        			;
		                        		
		                        			Purpura
		                        			;
		                        		
		                        			diagnosis
		                        			;
		                        		
		                        			etiology
		                        			;
		                        		
		                        			Skin
		                        			;
		                        		
		                        			diagnostic imaging
		                        			;
		                        		
		                        			pathology
		                        			;
		                        		
		                        			Vasculitis
		                        			;
		                        		
		                        			complications
		                        			;
		                        		
		                        			immunology
		                        			
		                        		
		                        	
3.Clinical significance of fractional exhaled nitric oxide combined with in vitro allergen test in identifying children at a high risk of asthma among those with recurrent wheezing.
Wei-Peng HOU ; Ya-Jie WANG ; Li-Hong QIAO ; Hui-Li SHEN
Chinese Journal of Contemporary Pediatrics 2017;19(9):979-982
OBJECTIVETo investigate the clinical value of combined determination of in vitro allergens and fractional exhaled nitric oxide (FeNO) in indentifying children at a high risk of asthma among those with recurrent wheezing.
METHODSA total of 148 children with recurrent wheezing (0.5-6 years old) were enrolled as study subjects, and 80 healthy children who underwent physical examination were enrolled as the control group. Pharmacia UniCAP immunoassay analyzer was used to measure specific immunoglobulin E (sIgE). Nano Coulomb Nitric Oxide Analyzer was used to measure FeNO. The asthma predictive index (API) was evaluated.
RESULTSThe recurrent wheezing group had a significantly higher proportion of children with positive sIgE than the control group [68.9% (102/148) vs 11.3% (9/80); P<0.05]. The recurrent wheezing group also had significantly higher levels and positive rate of FeNO than the control group (P<0.05). The overall positive rate of API in children with wheezing was 32.4%, and the API-positive children had a significantly higher FeNO value than the API-negative children (51±6 ppb vs 13±5 ppb; P<0.05). The detection rate of API was 40.2% (41/102) in positive-sIgE children and 50.1% (38/73) in FeNO-positive children, and there was no significant difference between these two groups. The children with positive sIgE and FeNO had a significantly higher detection rate of API (81.4%) than those with positive sIgE or FeNO (P<0.05).
CONCLUSIONSCombined determination of FeNO and in vitro allergens is more sensitive in detecting children at a high risk of asthma than FeNO or in vitro allergens determination alone and provides a good method for early identification, diagnosis, and intervention of asthma in children.
Allergens ; immunology ; Asthma ; diagnosis ; Breath Tests ; Child ; Child, Preschool ; Female ; Humans ; Immunoglobulin E ; blood ; Infant ; Male ; Nitric Oxide ; analysis ; Recurrence ; Respiratory Sounds ; diagnosis
4.Research advances in immunological pathogenesis of immunoglobulin A vasculitis.
Chinese Journal of Contemporary Pediatrics 2017;19(7):837-840
		                        		
		                        			
		                        			Immunoglobulin A (IgA) vasculitis is the most common leukocytoclastic small-vessel vasculitis in children and mainly involves the small vessels in the skin, joints, digestive tract, and kidneys. Its pathogenesis is still unclear. Currently, it is believed that environmental factors can cause autoimmune dysfunction and lead to the deposition of IgA-containing immune complexes on the wall of arterioles on the basis of genetic factors. This article reviews the research advances in the role of immune factors in the pathogenesis of IgA vasculitis.
		                        		
		                        		
		                        		
		                        			Autoantibodies
		                        			;
		                        		
		                        			analysis
		                        			;
		                        		
		                        			Complement System Proteins
		                        			;
		                        		
		                        			physiology
		                        			;
		                        		
		                        			Cytokines
		                        			;
		                        		
		                        			physiology
		                        			;
		                        		
		                        			Glycosylation
		                        			;
		                        		
		                        			Humans
		                        			;
		                        		
		                        			Immunoglobulin A
		                        			;
		                        		
		                        			analysis
		                        			;
		                        		
		                        			Immunoglobulin E
		                        			;
		                        		
		                        			metabolism
		                        			;
		                        		
		                        			Vasculitis
		                        			;
		                        		
		                        			etiology
		                        			;
		                        		
		                        			immunology
		                        			
		                        		
		                        	
5.Changes in serum YKL-40 level and humoral immune function and their significance in children with recurrent pneumonia.
Wei-Yin MA ; Shao PENG ; Ting ZHANG
Chinese Journal of Contemporary Pediatrics 2017;19(4):425-429
OBJECTIVETo investigate the changes in serum YKL-40 level and humoral immune function and their significance in children with recurrent pneumonia.
METHODSBlood samples were collected from 30 children with recurrent pneumonia (recurrent pneumonia group), 30 children with acute pneumonia (acute pneumonia group), and 30 healthy children (control group). Serum YKL-40 levels were measured by enzyme-linked immunosorbent assay. The correlation between serum YKL-40 level and laboratory indices related to humoral immune function was analyzed. The receiver operating characteristic (ROC) curve was used to analyze the diagnostic value of serum YKL-40 level for recurrent pneumonia.
RESULTSThe recurrent pneumonia group had a significantly higher serum YKL-40 level than the acute pneumonia and control groups (P<0.05). The acute pneumonia group had a significantly higher serum YKL-40 level than the control group (P<0.05). Serum levels of IgG and complement 4 in the recurrent pneumonia group were significantly lower than in the acute pneumonia group (P<0.05). Serum YKL-40 level was negatively correlated with serum IgG level (r=-0.309, P=0.047) and serum complement 4 level (r=-0.324, P=0.039). The area under the ROC curve of serum YKL-40 level for diagnosing recurrent pneumonia was 0.958 (95%CI: 0.921-0.994).
CONCLUSIONSHumoral immune function is low in children with recurrent pneumonia. Serum YKL-40 may be involved in the occurrence of recurrent pneumonia and can be used as a reference index for diagnosing recurrent pneumonia.
Child, Preschool ; Chitinase-3-Like Protein 1 ; blood ; Complement C4 ; analysis ; Female ; Humans ; Immunity, Humoral ; Immunoglobulin G ; blood ; Male ; Pneumonia ; immunology ; Recurrence
6.Effect of heat shock factor 1 on airway hyperresponsiveness and airway inflammation in mice with allergic asthma.
Jing WANG ; Li-Hong XIN ; Wei CHENG ; Zhen WANG ; Wen ZHANG
Chinese Journal of Contemporary Pediatrics 2017;19(2):222-228
OBJECTIVETo investigate the effect of heat shock factor 1 (HSF1) on airway hyperresponsiveness and airway inflammation in mice with asthma and possible mechanisms.
METHODSA total of 36 mice were randomly divided into four groups: control, asthma, HSF1 small interfering RNA negative control (siHSF1-NC), and siHSF1 intervention (n=9 each). Ovalbumin (OVA) sensitization and challenge were performed to induce asthma in the latter three groups. The mice in the siHSF1-NC and siHSF1 groups were treated with siHSF1-NC and siHSF1, respectively. A spirometer was used to measure airway responsiveness at 24 hours after the last challenge. The direct count method was used to calculate the number of eosinophils. ELISA was used to measure the serum level of OVA-specific IgE and levels of interleukin-4 (IL-4), interleukin-5 (IL-5), interleukin-13 (IL-13), and interferon-γ (IFN-γ) in lung tissues and bronchoalveolar lavage fluid (BALF). Quantitative real-time PCR was used to measure the mRNA expression of HSF1 in asthmatic mice. Western blot was used to measure the protein expression of HSF1, high-mobility group box 1 (HMGB1), and phosphorylated c-Jun N-terminal kinase (p-JNK).
RESULTSThe asthma group had significant increases in the mRNA and protein expression of HSF1 compared with the control group (P<0.05). The siHSF1 group had significantly reduced mRNA and protein expression of HSF1 compared with the siHSF1-NC group (P<0.05). The knockdown of HSF1 increased airway wall thickness, airway hyperresponsiveness, OVA-specific IgE content, and the number of eosinophils (P<0.05). Compared with the siHSF1-NC group, the siHSF1 group had significantly increased levels of IL-4, IL-5, and IL-13 and significantly reduced expression of IFN-γ in lung tissues and BALF (P<0.05), as well as significantly increased expression of HMGB1 and p-JNK (P<0.05).
CONCLUSIONSKnockdown of HSF1 aggravates airway hyperresponsiveness and airway inflammation in asthmatic mice, and its possible mechanism may involve the negative regulation of HMGB1 and JNK.
Animals ; Asthma ; etiology ; Bronchial Hyperreactivity ; etiology ; immunology ; Cytokines ; biosynthesis ; DNA-Binding Proteins ; analysis ; physiology ; Eosinophils ; physiology ; Female ; HMGB1 Protein ; analysis ; Heat Shock Transcription Factors ; Immunoglobulin E ; blood ; Mice ; Mice, Inbred BALB C ; Transcription Factors ; analysis ; physiology
7.Standardization of Weed Pollen Extracts, Japanese Hop and Mugwort, in Korea.
Kyoung Yong JEONG ; Mina SON ; Soo Young CHOI ; Kyung Hee PARK ; Hye Jung PARK ; Chein Soo HONG ; Jae Hyun LEE ; Jung Won PARK
Yonsei Medical Journal 2016;57(2):399-406
		                        		
		                        			
		                        			PURPOSE: Japanese hop (Humulus spp.) and mugwort (Artemisia spp.) are notable causes of autumn pollinosis in East Asia. However, Japanese hop and mugwort pollen extracts, which are widely used for the diagnosis, have not been standardized. This study was performed to standardize Japanese hop and mugwort pollen extracts. MATERIALS AND METHODS: Allergen extracts were prepared in a standardized way using locally collected Humulus japonicus and purchased Artemisia vulgaris pollens. The immunoglobulin E (IgE) reactivities of prepared extracts were compared with commercial extracts via IgE immunoblotting and inhibition analyses. Intradermal skin tests were performed to determine the bioequivalent allergy unit (BAU). RESULTS: The IgE reactive components of the extracts via IgE immunoblotting were similar to those of commercial extracts. A 11-kDa allergen showed the strongest IgE reactivity in Japanese hop, as did a 28-kDa allergen in mugwort pollen extracts. Allergenic potencies of the investigatory Japanese hop and mugwort extracts were essentially indistinguishable from the commercial ones. Sums of erythema of 50 mm by the intradermal skin test (SigmaED50) were calculated to be 14.4th and 13.6th three-fold dilutions for Japanese hop and mugwort extracts, respectively. Therefore, the allergenic activity of the prepared extracts was 90827.4 BAU/mg for Japanese hop and 34412 BAU/mg for mugwort. CONCLUSION: We produced Japanese hop and mugwort pollen extracts using a standardized method. Standardized Japanese hop and mugwort pollen extracts will facilitate the production of improved diagnostic and immunotherapeutic reagents.
		                        		
		                        		
		                        		
		                        			Allergens/*analysis/*immunology
		                        			;
		                        		
		                        			Antibody Specificity
		                        			;
		                        		
		                        			*Artemisia
		                        			;
		                        		
		                        			Bronchial Hyperreactivity/blood/immunology
		                        			;
		                        		
		                        			Cross Reactions
		                        			;
		                        		
		                        			Enzyme-Linked Immunosorbent Assay
		                        			;
		                        		
		                        			Humans
		                        			;
		                        		
		                        			Immunoblotting
		                        			;
		                        		
		                        			Immunoglobulin E/blood/*immunology
		                        			;
		                        		
		                        			Pollen/*chemistry/*immunology
		                        			;
		                        		
		                        			Reference Standards
		                        			;
		                        		
		                        			Republic of Korea
		                        			;
		                        		
		                        			Rhinitis, Allergic, Seasonal
		                        			
		                        		
		                        	
8.IgE Sensitization Patterns to Commonly Consumed Foods Determined by Skin Prick Test in Korean Adults.
Sung Ryeol KIM ; Hye Jung PARK ; Kyung Hee PARK ; Jae Hyun LEE ; Jung Won PARK
Journal of Korean Medical Science 2016;31(8):1197-1201
		                        		
		                        			
		                        			Offending food allergens can vary with regional preferences in food consumption. In this study, we analysed sensitization rates to commonly consumed foods in Korean adults suspected of having food allergy. One hundred and thirty four subjects underwent a skin prick test (SPT) with 55 food allergens, of which 13 were made by our laboratory and the rest were commercially purchased. Of the 134 patients, 73 (54.5%) were sensitized to one or more food allergens. Sensitization to chrysalis was detected most frequently, at a rate of 25.4%. Sensitization rates to other food allergens were as follows: maize grain (13.4%), shrimp (11.9%), almond (11.1%), wheat flour (8.2%), lobster (8.2%), buckwheat (8.2%), mackerel (5.2%), pollack (5.2%), halibut (4.5%), peanut (4.5%), anchovy (4.4%), squid (3.7%), saury (3.0%), common eel (3.0%), yellow corvina (3.0%), hairtail (2.2%), octopus (2.2%), and others. In addition to well-known food allergens, sensitivity to mackerel, chrysalis, pollack, and halibut, which are popular foods in Korea, was observed at high rates in Korean adults. We suggest that the SPT panel for food allergy in Korea should include these allergens.
		                        		
		                        		
		                        		
		                        			Adult
		                        			;
		                        		
		                        			Aged
		                        			;
		                        		
		                        			Allergens/immunology
		                        			;
		                        		
		                        			Animals
		                        			;
		                        		
		                        			Asian Continental Ancestry Group
		                        			;
		                        		
		                        			Female
		                        			;
		                        		
		                        			Flounder/immunology
		                        			;
		                        		
		                        			Food Hypersensitivity/*diagnosis
		                        			;
		                        		
		                        			Humans
		                        			;
		                        		
		                        			Immunoglobulin E/*analysis/immunology
		                        			;
		                        		
		                        			Male
		                        			;
		                        		
		                        			Middle Aged
		                        			;
		                        		
		                        			Mouth/immunology
		                        			;
		                        		
		                        			Perciformes/immunology
		                        			;
		                        		
		                        			Republic of Korea
		                        			;
		                        		
		                        			*Skin Tests
		                        			;
		                        		
		                        			Young Adult
		                        			
		                        		
		                        	
9.Correlations between the CagA Antigen and Serum Levels of Anti-Helicobacter pylori IgG and IgA in Children.
Ji Hyun SEO ; Chun Woo LIM ; Ji Sook PARK ; Jung Sook YEOM ; Jae Young LIM ; Jin Su JUN ; Hyang Ok WOO ; Hee Shang YOUN ; Seung Chul BAIK ; Woo Kon LEE ; Myung Je CHO ; Kwang Ho RHEE
Journal of Korean Medical Science 2016;31(3):417-422
		                        		
		                        			
		                        			We tested correlations between anti-Helicobacter pylori IgG and IgA levels and the urease test, anti-CagA protein antibody, degree of gastritis, and age. In total, 509 children (0-15 years) were enrolled. Subjects were stratified as 0-4 years (n = 132), 5-9 years (n = 274), and 10-15 years (n = 103) and subjected to the urease test, histopathology, ELISA, and western blot using whole-cell lysates of H. pylori strain 51. The positivity rate in the urease test (P = 0.003), the degree of chronic gastritis (P = 0.021), and H. pylori infiltration (P < 0.001) increased with age. The median titer for anti-H. pylori IgG was 732.5 IU/mL at 0-4 years, 689.0 IU/mL at 5-9 years, and 966.0 IU/mL at 10-15 years (P < 0.001); the median titer for anti-H. pylori IgA was 61.0 IU/mL at 0-4 years, 63.5 IU/mL at 5-9 years, and 75.0 IU/mL at 10-15 years (P < 0.001). The CagA-positivity rate was 26.5% at 0-4 years, 36.5% at 5-9 years, and 46.6% at 10-15 years for IgG (P = 0.036), and 11.3% at 0-4 years, 18.6% at 5-9 years, and 23.3% at 10-15 years for IgA (P < 0.001). Anti-H. pylori IgG and IgA titers increased with the urease test grade, chronic gastritis degree, active gastritis, and H. pylori infiltration. Presence of CagA-positivity is well correlated with a high urease test grade and high anti-H. pylori IgG/IgA levels.
		                        		
		                        		
		                        		
		                        			Adolescent
		                        			;
		                        		
		                        			Antibodies, Bacterial/*blood
		                        			;
		                        		
		                        			Antigens, Bacterial/*analysis/immunology
		                        			;
		                        		
		                        			Bacterial Proteins/*analysis/immunology/metabolism
		                        			;
		                        		
		                        			Blotting, Western
		                        			;
		                        		
		                        			Child
		                        			;
		                        		
		                        			Child, Preschool
		                        			;
		                        		
		                        			Chronic Disease
		                        			;
		                        		
		                        			Enzyme-Linked Immunosorbent Assay
		                        			;
		                        		
		                        			Female
		                        			;
		                        		
		                        			Gastritis/pathology
		                        			;
		                        		
		                        			Helicobacter Infections/blood/microbiology/*pathology
		                        			;
		                        		
		                        			Helicobacter pylori/isolation & purification/*metabolism
		                        			;
		                        		
		                        			Humans
		                        			;
		                        		
		                        			Immunoglobulin A/*blood
		                        			;
		                        		
		                        			Immunoglobulin G/*blood
		                        			;
		                        		
		                        			Infant
		                        			;
		                        		
		                        			Infant, Newborn
		                        			;
		                        		
		                        			Male
		                        			;
		                        		
		                        			Severity of Illness Index
		                        			;
		                        		
		                        			Urease/metabolism
		                        			
		                        		
		                        	
10.Painful immunoglobulin G4-related thyroiditis treated by total thyroidectomy.
Ihn Suk LEE ; Jung Uee LEE ; Kwan Ju LEE ; Yi Sun JANG ; Jong Min LEE ; Hye Soo KIM
The Korean Journal of Internal Medicine 2016;31(2):399-402
		                        		
		                        			
		                        			No abstract available.
		                        		
		                        		
		                        		
		                        			Adult
		                        			;
		                        		
		                        			Biomarkers/analysis
		                        			;
		                        		
		                        			Biopsy
		                        			;
		                        		
		                        			Diagnosis, Differential
		                        			;
		                        		
		                        			Female
		                        			;
		                        		
		                        			Goiter/complications/diagnostic imaging/immunology/*surgery
		                        			;
		                        		
		                        			Humans
		                        			;
		                        		
		                        			Immunoglobulin G/*analysis
		                        			;
		                        		
		                        			Pain/diagnosis/*etiology
		                        			;
		                        		
		                        			Predictive Value of Tests
		                        			;
		                        		
		                        			Thyroid Gland/diagnostic imaging/immunology/pathology/*surgery
		                        			;
		                        		
		                        			*Thyroidectomy
		                        			;
		                        		
		                        			Thyroiditis/complications/diagnostic imaging/immunology/*surgery
		                        			;
		                        		
		                        			Treatment Outcome
		                        			;
		                        		
		                        			Ultrasonography
		                        			
		                        		
		                        	
            
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