1.Animal DNA Typing and Its Research Progress in Forensic Medicine.
Hong-Yan GAO ; Guang-Fu LIU ; Jian WU ; Peng-Yu CHEN
Journal of Forensic Medicine 2023;39(2):161-167
With the advance of molecular biology, DNA analysis technology has been widely applied in forensic science. Non-human DNA analysis can be used in some special cases and has unique forensic value to provide investigation clues and trial basis. Animal DNA typing plays a more prominent role in the detection of all kinds of non-human DNA related cases and is the main content of forensic non-human DNA analysis. This paper reviews the development history, present situation, advantages and disadvantages of animal DNA typing according to its technology, characteristic, challenges facing forensic science application scenarios, and also its future development.
Animals
;
DNA Fingerprinting
;
Forensic Medicine
;
DNA/analysis*
;
Forensic Sciences
;
Molecular Biology
;
Forensic Genetics
2.Methods and Research Hotspots of Forensic Kinship Testing.
Journal of Forensic Medicine 2023;39(3):231-239
Kinship testing is widely needed in forensic science practice. This paper reviews the definitions of common concepts, and summarizes the basic principles, advantages and disadvantages, and application scope of kinship analysis methods, including identity by state (IBS) method, likelihood ratio (LR) method, method of moment (MoM), and identity by descent (IBD) segment method. This paper also discusses the research hotspots of challenging kinship testing, complex kinship testing, forensic genetic genealogy analysis, and non-human biological samples.
DNA Fingerprinting
;
Forensic Genetics/methods*
;
Forensic Sciences
;
Pedigree
;
Humans
3.Research Progresses of Tri-Allelic Patterns in Autosomal STR in Forensic DNA Analysis.
Xiao-Yan MA ; Hong-Yu SUN ; Qing LI
Journal of Forensic Medicine 2023;39(3):240-246
Tri-allelic pattern in autosomal STR is a common abnormal typing phenomenon in forensic DNA analysis, which brings difficulties and uncertainties to the evaluation of the evidence weight in actual cases. This paper reviews the types, formation mechanism, occurrence frequency, genetic pattern and quantitative evaluation of evidence of the tri-allelic pattern in autosomal STR in forensic DNA analysis. This paper mainly explains the formation mechanism and genetic patterns based on different types of tri-allelic pattern. This paper also discusses the determination of tri-allelic pattern and the quantitative method of evidence evaluation in paternity testing and individual identification. This paper aims to provide references for scientific and standardized analysis of this abnormal typing phenomenon in forensic DNA analysis.
Alleles
;
DNA/genetics*
;
Forensic Medicine
;
Gene Frequency
;
Microsatellite Repeats
;
Humans
4.Comparative of Forensic DNA Identification Using Cell Lysis Method and Magnetic Beads Method.
Jia-Jun SHI ; Dan WU ; Tie-Zhu LIU ; Si-Jing HAO ; Bi-Cheng MENG ; Shi-Lin LI ; Ya-Nan LIU
Journal of Forensic Medicine 2023;39(1):45-49
OBJECTIVES:
To compare the effects of cell lysis method and magnetic beads method in forensic DNA identification and to explore these two methods in forensic DNA identification.
METHODS:
The genome DNA of THP-1 cells in different quantities was extracted by the cell lysis method and magnetic beads method, and the DNA content was quantified by real-time quantitative PCR. The cell lysis method and magnetic beads method were used to type the STR of human blood with different dilution ratios.
RESULTS:
When the numbers of THP-1 cell were 100, 400 and 800, the DNA content extracted by cell lysis method were (1.219±0.334), (5.081±0.335), (9.332±0.318) ng, respectively; and the DNA content extracted by magnetic beads method were (1.020±0.281), (3.634±0.482), (7.896±0.759) ng, respectively. When the numbers of THP-1 cells were 400 and 800, the DNA content extracted by the cell lysis method was higher than that by the magnetic beads method. The sensitivity of cell lysis method and magnetic beads method was similar in STR typing of human blood at different dilution ratios. Complete STR typing could be obtained at 100, 300 and 500-fold dilutions of blood samples, but could not be detected at 700-fold dilution. STR typing of undiluted human blood could not be detected by cell lysis method.
CONCLUSIONS
The cell lysis method is easy to operate and can retain template DNA to the maximum extend. It is expected to be suitable for trace blood evidence tests.
Humans
;
Forensic Medicine
;
DNA/genetics*
;
Real-Time Polymerase Chain Reaction
;
Magnetic Phenomena
;
DNA Fingerprinting/methods*
;
Microsatellite Repeats
5.Age Estimation Based on DNA Methylation and Its Application Prospects in Forensic Medicine.
Zi-Wei WANG ; Qian-Nan XU ; Cheng-Tao LI ; Xi-Ling LIU
Journal of Forensic Medicine 2023;39(1):72-82
With the improvement of DNA methylation detection techniques, studies on age-related methylation sites have found more age-specific ones across tissues, which improves the sensitivity and accuracy of age estimation. In addition, the establishment of various statistical models also provides a new direction for the age estimation of tissues from different sources. This review summarizes the related studies of age estimation based on DNA methylation from the aspects of detection technology, age-related cytosine phosphate guanine site and model selection in recent years.
DNA Methylation
;
Forensic Genetics/methods*
;
CpG Islands
;
Forensic Medicine
7.Cross-Platform Application of DNA Methylation Age Estimation Model in Eastern Chinese Han Population.
Zi-Wei WANG ; Cheng-Tao LI ; Xi-Ling LIU
Journal of Forensic Medicine 2023;39(5):441-446
OBJECTIVES:
To evaluate the forensic application value of an age estimation model based on DNA methylation in eastern Chinese Han population, and to provide a theoretical basis for exploring age estimation models suitable for different detection platforms.
METHODS:
According to the 6 age-related methylation sites in the published blood DNA methylation age estimation models of Chinese Han population, the DNA methylation level of 48 samples was detected by pyrosequencing and next-generation sequencing (NGS). After submitting DNA methylation levels to the age estimation model, the DNA methylation ages were predicted and compared with their real ages.
RESULTS:
The 6 DNA methylation sites in both detection techniques were age-related, with an R2 of 0.85 and a median absolute deviation (MAD) of 4.81 years when using pyrosequencing;with an R2 of 0.84 and MAD of 4.41 years when using NGS.
CONCLUSIONS
The blood DNA methylation age estimation model can be used under pyrosequencing and multi-purpose regional methylation enrichment sequencing technology based on NGS and it can accurately estimate the age.
Humans
;
Aging/genetics*
;
CpG Islands
;
DNA Methylation
;
East Asian People
;
Forensic Genetics/methods*
8.Construction of an Analysis Model of mRNA Markers in Menstrual Blood Based on Naïve Bayes and Multivariate Logistic Regression Methods.
Qi ZHANG ; He-Miao ZHAO ; Kang YANG ; Jing CHEN ; Rui-Qin YANG ; Chong WANG
Journal of Forensic Medicine 2023;39(5):447-451
OBJECTIVES:
To establish the menstrual blood identification model based on Naïve Bayes and multivariate logistic regression methods by using specific mRNA markers in menstrual blood detection technology combined with statistical methods, and to quantitatively distinguish menstrual blood from other body fluids.
METHODS:
Body fluids including 86 menstrual blood, 48 peripheral blood, 48 vaginal secretions, 24 semen and 24 saliva samples were collected. RNA of the samples was extracted and cDNA was obtained by reverse transcription. Five menstrual blood-specific markers including members of the matrix metalloproteinase (MMP) family MMP3, MMP7, MMP11, progestogens associated endometrial protein (PAEP) and stanniocalcin-1 (STC1) were amplified and analyzed by electrophoresis. The results were analyzed by Naïve Bayes and multivariate logistic regression.
RESULTS:
The accuracy of the classification model constructed was 88.37% by Naïve Bayes and 91.86% by multivariate logistic regression. In non-menstrual blood samples, the distinguishing accuracy of peripheral blood, saliva and semen was generally higher than 90%, while the distinguishing accuracy of vaginal secretions was lower, which were 16.67% and 33.33%, respectively.
CONCLUSIONS
The mRNA detection technology combined with statistical methods can be used to establish a classification and discrimination model for menstrual blood, which can distignuish the menstrual blood and other body fluids, and quantitative description of analysis results, which has a certain application value in body fluid stain identification.
Female
;
Humans
;
RNA, Messenger/metabolism*
;
Bayes Theorem
;
Logistic Models
;
Menstruation
;
Body Fluids
;
Saliva
;
Semen
;
Forensic Genetics/methods*
9.Application of SNaPshot Technology in Semen-Specific cSNP Genetic Marker.
Rui-Yang TAO ; Shou-Yu WANG ; Chun-Yan YUAN ; Ruo-Cheng XIA ; Cheng-Tao LI
Journal of Forensic Medicine 2023;39(5):465-470
OBJECTIVES:
To explore the feasibility of genetic marker detection of semen-specific coding region single nucleotide polymorphism (cSNP) based on SNaPshot technology in semen stains and mixed body fluid identification.
METHODS:
Genomic DNA (gDNA) and total RNA were extracted from 16 semen stains and 11 mixtures composed of semen and venous blood, and the total RNA was reverse transcribed into complementary DNA (cDNA). The cSNP genetic markers were screened on the validated semen-specific mRNA coding genes. The cSNP multiplex detection system based on SNaPshot technology was established, and samples were genotyped by capillary electrophoresis (CE).
RESULTS:
A multiplex detection system containing 5 semen-specific cSNPs was successfully established. In 16 semen samples, except the cSNP located in the TGM4 gene showed allele loss in cDNA detection results, the gDNA and cDNA typing results of other cSNPs were highly consistent. When detecting semen-venous blood mixtures, the results of cSNP typing detected were consistent with the genotype of semen donor and were not interfered by the genotype of venous blood donor.
CONCLUSIONS
The method of semen-specific cSNPs detection by SNaPshot technology method can be applied to the genotyping of semen (stains) and provide information for determining the origin of semen in mixed body fluids (stains).
Genetic Markers
;
Semen
;
Polymorphism, Single Nucleotide
;
DNA, Complementary/genetics*
;
Body Fluids
;
RNA, Messenger/genetics*
;
DNA
;
Saliva
;
Forensic Genetics/methods*
10.Research Progress on Molecular Biology of Human Height Estimation.
Journal of Forensic Medicine 2023;39(5):487-492
As an important anthropometric characteristic, human height not only contributes to the recognition of other anthropological characteristics and genetic risk factors, but also is an important part of forensic DNA phenotyping studies. Accurate estimation of height can provide more complete information about the phenotype of suspects and provide help to solve cases. In recent years, having benefited from the rapid development of molecular biological techniques and bioinformatics, height-related genetics research has made some progress. This paper describes the research progress of human height estimation from the genetic variation and the epigenetic inheritance perspectives and looks into the future research direction.
Humans
;
Phenotype
;
DNA/genetics*
;
Molecular Biology
;
Forensic Genetics/methods*

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