1.Comparisons of Genetic Architecture Using Polygenic Risk Scores Derived From Large-Scale Genome-Wide Association Study Data Between Patients With Schizophrenia, Bipolar Disorder and Healthy Controls
Dong Eun LEE ; Min Jun CHOI ; Eun Young CHO ; Yong Min AHN ; Hyunju LEE ; Woojae MYUNG ; Tae Hyon HA ; Sung-Wan KIM ; Heon-Jeong LEE ; Kyooseob HA ; Kyung Sue HONG ; Ji Hyun BAEK
Korean Journal of Schizophrenia Research 2024;27(2):57-62
		                        		
		                        			 Objectives:
		                        			In this study, we aimed to compare the genetic architecture of schizophrenia (SCZ) and bipolar disorder (BD) in a Korean population by analyzing polygenic risk scores (PRS) derived from large-scale psychiatric disorder genome-wide association study data, based on genetic information collected from SCZ, BD, and healthy control groups. 
		                        		
		                        			Methods:
		                        			The study included 713 Korean patients with SCZ, 1,317 with BD, 526 healthy controls. Genotyping was performed using the Korean Biobank Array. PRS-continuous shrinkage method was used to calculate the PRS. Analysis of covariance (ANCOVA) was conducted to determine the association between SCZ or BD disorder and PRS after adjusting for sex. 
		                        		
		                        			Results:
		                        			ANCOVA revealed significant differences in PRS values by diagnosis for PRS for SCZ (F=215.281, p<0.001), PRS for BD (F=13.811, p<0.001), and PRS for major depressive disorder (F=6.042, p=0.002). Post-hoc analysis showed that PRS for SCZ was highest in SCZ, followed by BD, and healthy controls. PRS for BD was elevated in both BD and SCZ compared to healthy controls. 
		                        		
		                        			Conclusion
		                        			Our study revealed quantitative differences in genetic architecture between SCZ and BD compared to healthy controls, while also suggesting a shared genetic background between the two disorders. 
		                        		
		                        		
		                        		
		                        	
2.Effective microbial molecular diagnosis of periodontitis-related pathogen Porphyromonas gingivalis from salivary samples using rgpA gene
Jinuk JEONG ; Yunseok OH ; Junhyeon JEON ; Dong-Heon BAEK ; Dong Hee KIM ; Kornsorn SRIKULNATH ; Kyudong HAN
Genomics & Informatics 2023;21(1):e13-
		                        		
		                        			
		                        			 Importance of accurate molecular diagnosis and quantification of particular disease-related pathogenic microorganisms is highlighted as an introductory step to prevent and care for diseases. In this study, we designed a primer/probe set for quantitative real-time polymerase chain reaction (qRT-PCR) targeting rgpA gene, known as the specific virulence factor of periodontitis-related pathogenic bacteria ‘Porphyromonas gingivalis’, and evaluated its diagnostic efficiency by detecting and quantifying relative bacterial load of P. gingivalis within saliva samples collected from clinical subjects. As a result of qRT-PCR, we confirmed that relative bacterial load of P. gingivalis was detected and quantified within all samples of positive control and periodontitis groups. On the contrary, negative results were confirmed in both negative control and healthy groups. Additionally, as a result of comparison with next-generation sequencing (NGS)–based 16S metagenome profiling data, we confirmed relative bacterial load of P. gingivalis, which was not identified on bacterial classification table created through 16S microbiome analysis, in qRT-PCR results. It showed that an approach to quantifying specific microorganisms by applying qRT-PCR method could solve microbial misclassification issues at species level of an NGS-based 16S microbiome study. In this respect, we suggest that P. gingivalis–specific primer/probe set introduced in present study has efficient applicability in various oral healthcare industries, including periodontitis-related microbial molecular diagnosis field. 
		                        		
		                        		
		                        		
		                        	
3.Antimicrobial activity of candidate probiotic Streptococcus salivarius against Gram-positive bacteria in oral cavity
Sung-Hoon LEE ; Dong-Heon BAEK
Journal of Korean Academy of Oral Health 2022;46(4):217-221
		                        		
		                        			 Objectives:
		                        			The aim of this study is to investigate antimicrobial activity in isolated  Streptococcus salivarius against Gram-positive bacteria related oral diseases. 
		                        		
		                        			Methods:
		                        			S. salivarius was used in G2, G7, K12, and ATCC 7073 strains and tryptic soy broth supplemented with glucose was cultivated. Actinomyces israelii, Actinomyces viscosus, and Enterococcus faecalis were cultivated with brain heart infusion broth. Streptococcus mutans and Streptococcus sobrinus were maintained using tryptic soy broth. The antimicrobial activity of S. salivarius was performed by minimum inhibitory concentration using the spent culture medium. 
		                        		
		                        			Results:
		                        			All S. salivarius have antimicrobial activity against Gram-positive bacteria in oral cavity. When comparing antimicrobial activity, S. salivarius G2 and G7 as isolated strain showed stronger antimicrobial activity against Gram-positive microbe than type K12 strain. 
		                        		
		                        			Conclusions
		                        			S. salivarius G2 and G7 have strong antimicrobial activity and may be prevent oral disease by Gram-positive bacteria in oral cavity. 
		                        		
		                        		
		                        		
		                        	
4.Clinical Features and Prognosis of Patients with Primary Intestinal B-cell Lymphoma Treated with Chemotherapy with or without Surgery
Ra Ri CHA ; Dong Hoon BAEK ; Gyeong Won LEE ; Seun Ja PARK ; Jong Hoon LEE ; Jong Ha PARK ; Tae Oh KIM ; Sang Heon LEE ; Hyung Wook KIM ; Hyun Jin KIM ; Busan Ulsan Gyeongnam Intestinal Study Group Society (BIGS)
The Korean Journal of Gastroenterology 2021;78(6):320-327
		                        		
		                        			 Background/Aims:
		                        			This multicenter study reviewed the clinical features and prognosis according to the primary site of involvement and the treatment modality in patients with B-cell primary intestinal lymphoma (PIL). 
		                        		
		                        			Methods:
		                        			Among 125 consecutive patients diagnosed with PIL, 100 patients were analyzed. 
		                        		
		                        			Results:
		                        			The median age was 59 years, and the male to female ratio was 1.86:1. Diffuse large B-cell lymphoma (66/100, 66.0%) was the most common histological subtype. The estimated 5-year survival rate (5-YSR) was 48.5%. The 5-YSR was similar regardless of the type of primary treatment (chemotherapy alone vs. surgery/chemotherapy, 50.7 vs. 45.3%, p=0.582). A comparison of the survival according to the primary site of involvement revealed a 5-YSR of 32.5% (p=0.027), 64.3% (reference), 46.5% (p=0.113), and 49.8% (p=0.024) for the small intestine, ileocecal region, large intestine, and multiple sites, respectively. Multivariate analysis, however, revealed a low hemoglobin level, advanced Ann Arbor stage, and aggressive histological type to be independent prognostic factors for shorter survival but not ileocecal region involvement. 
		                        		
		                        			Conclusions
		                        			The Ann Arbor stage, hemoglobin level, and histological type were independent prognostic factors for survival, while the primary site of involvement and treatment modality did not affect the prognosis in patients with B-cell PIL. 
		                        		
		                        		
		                        		
		                        	
5.Comparison of Cariogenic Characteristics between Fluoride-sensitive and Fluoride-resistant Streptococcus mutans
Seung-Hwan ONG ; Jongsoo KIM ; Dong-Heon BAEK ; Seunghoon YOO
Journal of Korean Academy of Pediatric Dentistry 2020;47(4):397-405
		                        		
		                        			
		                        			 The aim of this study is to compare cariogenic characteristics of fluoride-sensitive Streptococcus mutans [fluoride-sensitive (FS) S. mutans ] and fluoride-resistant Streptococcus mutans [fluoride-resistant (FR) S. mutans] in the presence of sucrose, and to evaluate its effect on cariogenic biofilm formation. S. mutans ATCC 25175 was continuously cultured in trypticase soy broth (TSB) containing NaF (70 ppm) for 40 days to generate FR S. mutans . FS and FR S. mutans were inoculated in TSB with or without 2% sucrose, and optical density and pH were measured every hour. An oral biofilm was formed using saliva bacteria and analyzed through confocal laser scanning microscopy and CFU count. Finally, the expression of glucosyltransferases genes of both S. mutans was investigated through RT-PCR. FR S. mutans exhibited slower growth and lower acidogenicity in the presence of sucrose compared to FS S. mutans . Both cariogenic and single species biofilm formation was lower in the presence of FR S. mutans , along with reduced number of bacteria. FR S. mutans showed significantly low levels of gtfB, gtfC, and gtfD expression compared to FS S. mutans . On the basis of results, FR S. mutans may be less virulent in the induction of dental caries. 
		                        		
		                        		
		                        		
		                        	
6.Similarities of Aspects of Biological Rhythms between Major Depression and Bipolar II Disorder Compared to Bipolar I Disorder: A Finding from the Early-Onset Mood Disorder Cohort
Su Cheol KIM ; Chul Hyun CHO ; Yujin LEE ; Ju Yeon SEO ; Yong Min AHN ; Se Joo KIM ; Tae Hyon HA ; Boseok CHA ; Eunsoo MOON ; Dong Yeon PARK ; Ji Hyun BAEK ; Hee Ju KANG ; Hyonggin AN ; Heon Jeong LEE
Psychiatry Investigation 2019;16(11):829-835
		                        		
		                        			
		                        			OBJECTIVE: The biological rhythm is closely related to mood symptoms. The purpose of this study was to assess the differences in biological rhythms among subjects with mood disorder [bipolar I disorder (BD I), bipolar II disorder (BD II), major depressive disorder (MDD)] and healthy control subjects.METHODS: A total of 462 early-onset mood disorder subjects were recruited from nine hospitals. The controls subjects were recruited from the general population of South Korea. Subject groups and control subject were evaluated for the Korean language version of Biological Rhythms Interview of Assessment in Neuropsychiatry (K-BRIAN) at the initial evaluation.RESULTS: The mean K-BRIAN scores were 35.59 [standard deviation (SD)=13.37] for BD I, 43.05 (SD=11.85) for BD II, 43.55 (SD=12.22) for MDD, and 29.1 (SD=8.15) for the control group. In the case of mood disorders, biological rhythm disturbances were greater than that in the control group (p<0.05). A significant difference existed between BD I and BD II (BD I 
7.Gland Attenuation, a Novel Morphological Feature of Colorectal Cancer: Evidence for an Epithelial-Mesenchymal Transition.
Tae Hwa BAEK ; Dong Wook KANG ; Joo Heon KIM ; Hyun Jin SON
Annals of Coloproctology 2018;34(4):187-196
		                        		
		                        			
		                        			PURPOSE: Along the invasive margin, colorectal cancer may show distinctive morphologic changes characterized by an asymmetrically attenuating tumor gland with loss of polarity. The author coined the term ‘gland attenuation (GA)’ for these peculiar changes. The aims of this study were to compare the immunoreactivity of the epithelial-mesenchymal transition (EMT) markers E-cadherin and β-catenin and thus determine whether EMTs occurs at tumor budding (TB) or GA sites and to assess the association of TB and/or GA levels with clinicopathological parameters and prognosis. METHODS: Expression patterns of E-cadherin and β-catenin in the tumor centers at GA and TB sites were examined in 101 patients with well or moderately differentiated CRCs, and the prognostic significance of TB and/or GA was statistically evaluated. RESULTS: GA foci, as well as TB foci, revealed loss of membranous and cytoplasmic E-cadherin expressions and aberrant β-catenin expression with reduced membranous expression and increased localization to the nucleus, suggesting that EMTs occur in GA as well as in TB. The high-TB and the TB-dominant groups were significantly correlated with advanced invasion depth, presence of lymph node metastasis, advanced pathologic staging and presence of lymphovascular invasion. The high-TB and the TB-dominant groups showed poor overall survival (OS) and recurrence-free survival (RFS), and high TB was an independent prognostic factor in the multivariate analyses for OS and RFS. CONCLUSION: This study showed evidence that EMTs occurs at GA sites as well as TB foci. TB is a strong and independent prognostic factor, and TB-dominance may be an indicator of adverse clinical outcome.
		                        		
		                        		
		                        		
		                        			Cadherins
		                        			;
		                        		
		                        			Colorectal Neoplasms*
		                        			;
		                        		
		                        			Cytoplasm
		                        			;
		                        		
		                        			Epithelial-Mesenchymal Transition*
		                        			;
		                        		
		                        			Humans
		                        			;
		                        		
		                        			Lymph Nodes
		                        			;
		                        		
		                        			Multivariate Analysis
		                        			;
		                        		
		                        			Neoplasm Metastasis
		                        			;
		                        		
		                        			Numismatics
		                        			;
		                        		
		                        			Prognosis
		                        			
		                        		
		                        	
8.Design and Methods of the Mood Disorder Cohort Research Consortium (MDCRC) Study.
Chul Hyun CHO ; Yong Min AHN ; Se Joo KIM ; Tae Hyun HA ; Hong Jin JEON ; Boseok CHA ; Eunsoo MOON ; Dong Yeon PARK ; Ji Hyun BAEK ; Hee Ju KANG ; Vin RYU ; Hyonggin AN ; Heon Jeong LEE
Psychiatry Investigation 2017;14(1):100-106
		                        		
		                        			
		                        			The Mood Disorder Cohort Research Consortium (MDCRC) study is designed as a naturalistic observational prospective cohort study for early-onset mood disorders (major depressive disorders, bipolar disorders type 1 and 2) in South Korea. The study subjects consist of two populations: 1) patients with mood disorders under 25 years old and 2) patients with mood disorders within 2 years of treatment under 35 years old. After successful screening, the subjects are evaluated using baseline assessments and serial follow-up assessments at 3-month intervals. Between the follow-up assessments, subjects are dictated to check their own daily mood status before bedtime using the eMood chart application or a paper mood diary. At the regular visits every 3 months, inter-visit assessments are evaluated based on daily mood charts and interviews with patients. In addition to the daily mood chart, sleep quality, inter-visit major and minor mood episodes, stressful life events, and medical usage pattern with medical expenses are also assessed. Genomic DNA from blood is obtained for genomic analyses. From the MDCRC study, the clinical course, prognosis, and related factors of early-onset mood disorders can be clarified. The MDCRC is also able to facilitate translational research for mood disorders and provide a resource for the convergence study of mood disorders.
		                        		
		                        		
		                        		
		                        			Bipolar Disorder
		                        			;
		                        		
		                        			Cohort Studies*
		                        			;
		                        		
		                        			Depressive Disorder
		                        			;
		                        		
		                        			Depressive Disorder, Major
		                        			;
		                        		
		                        			DNA
		                        			;
		                        		
		                        			Follow-Up Studies
		                        			;
		                        		
		                        			Humans
		                        			;
		                        		
		                        			Korea
		                        			;
		                        		
		                        			Mass Screening
		                        			;
		                        		
		                        			Methods*
		                        			;
		                        		
		                        			Mood Disorders*
		                        			;
		                        		
		                        			Prognosis
		                        			;
		                        		
		                        			Prospective Studies
		                        			;
		                        		
		                        			Translational Medical Research
		                        			
		                        		
		                        	
9.Difference of the Nuclear Green Light Intensity between Papillary Carcinoma Cells Showing Clear Nuclei and Non-neoplastic Follicular Epithelia in Papillary Thyroid Carcinoma.
Hyekyung LEE ; Tae Hwa BAEK ; Meeja PARK ; Seung Yun LEE ; Hyun Jin SON ; Dong Wook KANG ; Joo Heon KIM ; Soo Young KIM
Journal of Pathology and Translational Medicine 2016;50(5):355-360
		                        		
		                        			
		                        			BACKGROUND: There is subjective disagreement regarding nuclear clearing in papillary thyroid carcinoma. In this study, using digital instruments, we were able to quantify many ambiguous pathologic features and use numeric data to express our findings. METHODS: We examined 30 papillary thyroid carcinomas. For each case, we selected representative cancer cells showing clear nuclei and surrounding non-neoplastic follicular epithelial cells and evaluated objective values of green light intensity (GLI) for quantitative analysis of nuclear clearing in papillary thyroid carcinoma. RESULTS: From 16,274 GLI values from 600 cancer cell nuclei and 13,752 GLI values from 596 non-neoplastic follicular epithelial nuclei, we found a high correlation of 94.9% between GLI and clear nuclei. GLI between the cancer group showing clear nuclei and non-neoplastic follicular epithelia was statistically significant. The overall average level of GLI in the cancer group was over two times higher than the non-neoplastic group despite a wide range of GLI. On a polygonal line graph, there was a fluctuating unique difference between both the cancer and non-neoplastic groups in each patient, which was comparable to the microscopic findings. CONCLUSIONS: Nuclear GLI could be a useful factor for discriminating between carcinoma cells showing clear nuclei and non-neoplastic follicular epithelia in papillary thyroid carcinoma.
		                        		
		                        		
		                        		
		                        			Carcinoma, Papillary*
		                        			;
		                        		
		                        			Cell Nucleus
		                        			;
		                        		
		                        			Epithelial Cells
		                        			;
		                        		
		                        			Humans
		                        			;
		                        		
		                        			Image Processing, Computer-Assisted
		                        			;
		                        		
		                        			Thyroid Gland*
		                        			;
		                        		
		                        			Thyroid Neoplasms*
		                        			
		                        		
		                        	
10.Regulation of retinal angiogenesis by phospholipase C-β3 signaling pathway.
Jung Min HA ; Seung Hoon BAEK ; Young Hwan KIM ; Seo Yeon JIN ; Hye Sun LEE ; Sun Ja KIM ; Hwa Kyoung SHIN ; Dong Hyung LEE ; Sang Heon SONG ; Chi Dae KIM ; Sun Sik BAE
Experimental & Molecular Medicine 2016;48(6):e240-
		                        		
		                        			
		                        			Angiogenesis has an essential role in many pathophysiologies. Here, we show that phospholipase C-β3 (PLC-β3) isoform regulates endothelial cell function and retinal angiogenesis. Silencing of PLC-β3 in human umbilical vein endothelial cells (HUVECs) significantly delayed proliferation, migration and capillary-like tube formation. In addition, mice lacking PLC-β3 showed impaired retinal angiogenesis with delayed endothelial proliferation, reduced endothelial cell activation, abnormal vessel formation and hemorrhage. Finally, tumor formation was significantly reduced in mice lacking PLC-β3 and showed irregular size and shape of blood vessels. These results suggest that regulation of endothelial function by PLC-β3 may contribute to angiogenesis.
		                        		
		                        		
		                        		
		                        			Animals
		                        			;
		                        		
		                        			Blood Vessels
		                        			;
		                        		
		                        			Endothelial Cells
		                        			;
		                        		
		                        			Hemorrhage
		                        			;
		                        		
		                        			Human Umbilical Vein Endothelial Cells
		                        			;
		                        		
		                        			Mice
		                        			;
		                        		
		                        			Phospholipases*
		                        			;
		                        		
		                        			Retinaldehyde*
		                        			
		                        		
		                        	
            
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