1.Alzheimer's disease classification based on nonlinear high-order features and hypergraph convolutional neural network.
An ZENG ; Bairong LUO ; Dan PAN ; Huabin RONG ; Jianfeng CAO ; Xiaobo ZHANG ; Jing LIN ; Yang YANG ; Jun LIU
Journal of Biomedical Engineering 2023;40(5):852-858
Alzheimer's disease (AD) is an irreversible neurodegenerative disorder that damages patients' memory and cognitive abilities. Therefore, the diagnosis of AD holds significant importance. The interactions between regions of interest (ROIs) in the brain often involve multiple areas collaborating in a nonlinear manner. Leveraging these nonlinear higher-order interaction features to their fullest potential contributes to enhancing the accuracy of AD diagnosis. To address this, a framework combining nonlinear higher-order feature extraction and three-dimensional (3D) hypergraph neural networks is proposed for computer-assisted diagnosis of AD. First, a support vector machine regression model based on the radial basis function kernel was trained on ROI data to obtain a base estimator. Then, a recursive feature elimination algorithm based on the base estimator was applied to extract nonlinear higher-order features from functional magnetic resonance imaging (fMRI) data. These features were subsequently constructed into a hypergraph, leveraging the complex interactions captured in the data. Finally, a four-dimensional (4D) spatiotemporal hypergraph convolutional neural network model was constructed based on the fMRI data for classification. Experimental results on the Alzheimer's Disease Neuroimaging Initiative (ADNI) database demonstrated that the proposed framework outperformed the Hyper Graph Convolutional Network (HyperGCN) framework by 8% and traditional two-dimensional (2D) linear feature extraction methods by 12% in the AD/normal control (NC) classification task. In conclusion, this framework demonstrates an improvement in AD classification compared to mainstream deep learning methods, providing valuable evidence for computer-assisted diagnosis of AD.
Humans
;
Alzheimer Disease/diagnostic imaging*
;
Neural Networks, Computer
;
Magnetic Resonance Imaging/methods*
;
Neuroimaging/methods*
;
Diagnosis, Computer-Assisted
;
Brain
;
Cognitive Dysfunction
2.Artificial intelligence-assisted colonoscopy: a narrative review of current data and clinical applications.
James Weiquan LI ; Lai Mun WANG ; Tiing Leong ANG
Singapore medical journal 2022;63(3):118-124
Colonoscopy is the reference standard procedure for the prevention and diagnosis of colorectal cancer, which is a leading cause of cancer-related deaths in Singapore. Artificial intelligence systems are automated, objective and reproducible. Artificial intelligence-assisted colonoscopy has recently been introduced into clinical practice as a clinical decision support tool. This review article provides a summary of the current published data and discusses ongoing research and current clinical applications of artificial intelligence-assisted colonoscopy.
Artificial Intelligence
;
Colonic Polyps/diagnosis*
;
Colonoscopy/methods*
;
Colorectal Neoplasms/diagnosis*
;
Diagnosis, Computer-Assisted
;
Humans
3.Design and implementation for portable ultrasound-aided breast cancer screening system.
Zhicheng WANG ; Bingbing HE ; Yufeng ZHANG ; Zhiyao LI ; Ruihan YAO ; Kai HUANG
Journal of Biomedical Engineering 2022;39(2):390-397
Early screening is an important means to reduce breast cancer mortality. In order to solve the problem of low breast cancer screening rates caused by limited medical resources in remote and impoverished areas, this paper designs a breast cancer screening system aided with portable ultrasound Clarius. The system automatically segments the tumor area of the B-ultrasound image on the mobile terminal and uses the ultrasound radio frequency data on the cloud server to automatically classify the benign and malignant tumors. Experimental results in this study show that the accuracy of breast tumor segmentation reaches 98%, and the accuracy of benign and malignant classification reaches 82%, and the system is accurate and reliable. The system is easy to set up and operate, which is convenient for patients in remote and poor areas to carry out early breast cancer screening. It is beneficial to objectively diagnose disease, and it is the first time for the domestic breast cancer auxiliary screening system on the mobile terminal.
Breast/pathology*
;
Breast Neoplasms/pathology*
;
Diagnosis, Computer-Assisted
;
Early Detection of Cancer
;
Female
;
Humans
;
Ultrasonography
;
Ultrasonography, Mammary/methods*
4.An optimized segmentation of main vessel in coronary angiography images via removing the overlapping pacemaker.
Yi HUANG ; Hongbo YANG ; Menghua XIA ; Yanan QU ; Yi GUO ; Guohui ZHOU ; Feng ZHANG ; Yuanyuan WANG
Journal of Biomedical Engineering 2022;39(5):853-861
Coronary angiography (CAG) as a typical imaging modality for the diagnosis of coronary diseases hasbeen widely employed in clinical practices. For CAG-based computer-aided diagnosis systems, accurate vessel segmentation plays a fundamental role. However, patients with bradycardia usually have a pacemaker which frequently interferes the vessel segmentation. In this case, the segmentation of vessels will be hard. To mitigate interferences of pacemakers and then extract main vessels more effectively in CAG images, we propose an approach. At first, a pseudo CAG (pCAG) image is generated through a part of a CAG sequence, in which the pacemaker exists. Then, a local feature descriptor is employed to register the relative location of pacemaker between the pCAG image and the target CAG image. Finally, combining the registration result and segmentation results of main vessels and pacemaker, interferences of pacemaker are removed and the segmentation of main vessels is improved. The proposed method is evaluated based on 11 CAG images with pacemakers acquired in clinical practices. An optimization ratio of the Dice coefficient is 12.04%, which demonstrates that our method can remove overlapping pacemakers and achieve the improvement of main vessel segmentation in CAG images.Our method can further become a helpful component in a CAG-based computer-aided diagnosis system, improving its diagnosis accuracy and efficiency.
Humans
;
Coronary Angiography/methods*
;
Diagnosis, Computer-Assisted
;
Pacemaker, Artificial
;
Image Processing, Computer-Assisted/methods*
;
Algorithms
5.Establishment of a deep feature-based classification model for distinguishing benign and malignant breast tumors on full-filed digital mammography.
Cuixia LIANG ; Mingqiang LI ; Zhaoying BIAN ; Wenbing LV ; Dong ZENG ; Jianhua MA
Journal of Southern Medical University 2019;39(1):88-92
OBJECTIVE:
To develop a deep features-based model to classify benign and malignant breast lesions on full- filed digital mammography.
METHODS:
The data of full-filed digital mammography in both craniocaudal view and mediolateral oblique view from 106 patients with breast neoplasms were analyzed. Twenty-three handcrafted features (HCF) were extracted from the images of the breast tumors and a suitable feature set of HCF was selected using -test. The deep features (DF) were extracted from the 3 pre-trained deep learning models, namely AlexNet, VGG16 and GoogLeNet. With abundant breast tumor information from the craniocaudal view and mediolateral oblique view, we combined the two extracted features (DF and HCF) as the two-view features. A multi-classifier model was finally constructed based on the combined HCF and DF sets. The classification ability of different deep learning networks was evaluated.
RESULTS:
Quantitative evaluation results showed that the proposed HCF+DF model outperformed HCF model, and AlexNet produced the best performances among the 3 deep learning models.
CONCLUSIONS
The proposed model that combines DF and HCF sets of breast tumors can effectively distinguish benign and malignant breast lesions on full-filed digital mammography.
Breast Neoplasms
;
classification
;
diagnostic imaging
;
Deep Learning
;
Diagnosis, Computer-Assisted
;
methods
;
Female
;
Humans
;
Mammography
;
methods
6.Overview of Deep Learning in Gastrointestinal Endoscopy
Jun Ki MIN ; Min Seob KWAK ; Jae Myung CHA
Gut and Liver 2019;13(4):388-393
Artificial intelligence is likely to perform several roles currently performed by humans, and the adoption of artificial intelligence-based medicine in gastroenterology practice is expected in the near future. Medical image-based diagnoses, such as pathology, radiology, and endoscopy, are expected to be the first in the medical field to be affected by artificial intelligence. A convolutional neural network, a kind of deep-learning method with multilayer perceptrons designed to use minimal preprocessing, was recently reported as being highly beneficial in the field of endoscopy, including esophagogastroduodenoscopy, colonoscopy, and capsule endoscopy. A convolutional neural network-based diagnostic program was challenged to recognize anatomical locations in esophagogastroduodenoscopy images, Helicobacter pylori infection, and gastric cancer for esophagogastroduodenoscopy; to detect and classify colorectal polyps; to recognize celiac disease and hookworm; and to perform small intestine motility characterization of capsule endoscopy images. Artificial intelligence is expected to help endoscopists provide a more accurate diagnosis by automatically detecting and classifying lesions; therefore, it is essential that endoscopists focus on this novel technology. In this review, we describe the effects of artificial intelligence on gastroenterology with a special focus on automatic diagnosis, based on endoscopic findings.
Ancylostomatoidea
;
Artificial Intelligence
;
Capsule Endoscopy
;
Celiac Disease
;
Colonoscopy
;
Diagnosis
;
Diagnosis, Computer-Assisted
;
Endoscopy
;
Endoscopy, Digestive System
;
Endoscopy, Gastrointestinal
;
Gastroenterology
;
Helicobacter pylori
;
Humans
;
Intestine, Small
;
Learning
;
Methods
;
Neural Networks (Computer)
;
Pathology
;
Polyps
;
Stomach Neoplasms
7.Automatic disease stage classification of glioblastoma multiforme histopathological images using deep convolutional neural network.
Asami YONEKURA ; Hiroharu KAWANAKA ; V B SURYA PRASATH ; Bruce J ARONOW ; Haruhiko TAKASE
Biomedical Engineering Letters 2018;8(3):321-327
In the field of computational histopathology, computer-assisted diagnosis systems are important in obtaining patient-specific diagnosis for various diseases and help precision medicine. Therefore, many studies on automatic analysis methods for digital pathology images have been reported. In this work, we discuss an automatic feature extraction and disease stage classification method for glioblastoma multiforme (GBM) histopathological images. In this paper, we use deep convolutional neural networks (Deep CNNs) to acquire feature descriptors and a classification scheme simultaneously. Further, comparisons with other popular CNNs objectively as well as quantitatively in this challenging classification problem is undertaken. The experiments using Glioma images from The Cancer Genome Atlas shows that we obtain 96:5% average classification accuracy for our network and for higher cross validation folds other networks perform similarly with a higher accuracy of 98:0%. Deep CNNs could extract significant features from the GBM histopathology images with high accuracy. Overall, the disease stage classification of GBM from histopathological images with deep CNNs is very promising and with the availability of large scale histopathological image data the deep CNNs are well suited in tackling this challenging problem.
Classification*
;
Diagnosis
;
Diagnosis, Computer-Assisted
;
Genome
;
Glioblastoma*
;
Glioma
;
Methods
;
Pathology
;
Precision Medicine
;
Subject Headings
8.Visual Fixation Assessment in Patients with Disorders of Consciousness Based on Brain-Computer Interface.
Jun XIAO ; Jiahui PAN ; Yanbin HE ; Qiuyou XIE ; Tianyou YU ; Haiyun HUANG ; Wei LV ; Jiechun ZHANG ; Ronghao YU ; Yuanqing LI
Neuroscience Bulletin 2018;34(4):679-690
Visual fixation is an item in the visual function subscale of the Coma Recovery Scale-Revised (CRS-R). Sometimes clinicians using the behavioral scales find it difficult to detect because of the motor impairment in patients with disorders of consciousness (DOCs). Brain-computer interface (BCI) can be used to improve clinical assessment because it directly detects the brain response to an external stimulus in the absence of behavioral expression. In this study, we designed a BCI system to assist the visual fixation assessment of DOC patients. The results from 15 patients indicated that three showed visual fixation in both CRS-R and BCI assessments and one did not show such behavior in the CRS-R assessment but achieved significant online accuracy in the BCI assessment. The results revealed that electroencephalography-based BCI can detect the brain response for visual fixation. Therefore, the proposed BCI may provide a promising method for assisting behavioral assessment using the CRS-R.
Adolescent
;
Adult
;
Aged
;
Brain
;
physiopathology
;
Brain-Computer Interfaces
;
Consciousness Disorders
;
diagnosis
;
physiopathology
;
Diagnosis, Computer-Assisted
;
methods
;
Electroencephalography
;
methods
;
Evoked Potentials
;
Female
;
Fixation, Ocular
;
physiology
;
Humans
;
Male
;
Middle Aged
;
Neurologic Examination
;
Pilot Projects
;
Severity of Illness Index
;
User-Computer Interface
9.Percutaneous Radiologically-Guided Gastrostomy (PRG): Safety, Efficacy and Trends in a Single Institution.
Gerard Zx LOW ; Chow Wei TOO ; Yen Yeong POH ; Richard Hg LO ; Bien Soo TAN ; Apoorva GOGNA ; Farah Gillan IRANI ; Kiang Hiong TAY
Annals of the Academy of Medicine, Singapore 2018;47(11):494-498
Enteral Nutrition
;
instrumentation
;
methods
;
Female
;
Fluoroscopy
;
methods
;
Gastrostomy
;
adverse effects
;
instrumentation
;
methods
;
Humans
;
Male
;
Middle Aged
;
Outcome and Process Assessment (Health Care)
;
Postoperative Complications
;
classification
;
diagnosis
;
therapy
;
Reproducibility of Results
;
Retrospective Studies
;
Singapore
;
Surgery, Computer-Assisted
;
methods
;
Treatment Outcome
10.Towards precision medicine: from quantitative imaging to radiomics.
U Rajendra ACHARYA ; Yuki HAGIWARA ; Vidya K SUDARSHAN ; Wai Yee CHAN ; Kwan Hoong NG
Journal of Zhejiang University. Science. B 2018;19(1):6-24
Radiology (imaging) and imaging-guided interventions, which provide multi-parametric morphologic and functional information, are playing an increasingly significant role in precision medicine. Radiologists are trained to understand the imaging phenotypes, transcribe those observations (phenotypes) to correlate with underlying diseases and to characterize the images. However, in order to understand and characterize the molecular phenotype (to obtain genomic information) of solid heterogeneous tumours, the advanced sequencing of those tissues using biopsy is required. Thus, radiologists image the tissues from various views and angles in order to have the complete image phenotypes, thereby acquiring a huge amount of data. Deriving meaningful details from all these radiological data becomes challenging and raises the big data issues. Therefore, interest in the application of radiomics has been growing in recent years as it has the potential to provide significant interpretive and predictive information for decision support. Radiomics is a combination of conventional computer-aided diagnosis, deep learning methods, and human skills, and thus can be used for quantitative characterization of tumour phenotypes. This paper discusses the overview of radiomics workflow, the results of various radiomics-based studies conducted using various radiological images such as computed tomography (CT), magnetic resonance imaging (MRI), and positron-emission tomography (PET), the challenges we are facing, and the potential contribution of radiomics towards precision medicine.
Biomarkers, Tumor
;
Diagnosis, Computer-Assisted
;
Genome
;
Genomics
;
Humans
;
Magnetic Resonance Imaging
;
Neoplasms/therapy*
;
Phenotype
;
Positron-Emission Tomography
;
Precision Medicine/methods*
;
Radiology/methods*
;
Radiology, Interventional/methods*
;
Tomography, X-Ray Computed
;
Workflow

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