2.Age Estimation Based on DNA Methylation and Its Application Prospects in Forensic Medicine.
Zi-Wei WANG ; Qian-Nan XU ; Cheng-Tao LI ; Xi-Ling LIU
Journal of Forensic Medicine 2023;39(1):72-82
With the improvement of DNA methylation detection techniques, studies on age-related methylation sites have found more age-specific ones across tissues, which improves the sensitivity and accuracy of age estimation. In addition, the establishment of various statistical models also provides a new direction for the age estimation of tissues from different sources. This review summarizes the related studies of age estimation based on DNA methylation from the aspects of detection technology, age-related cytosine phosphate guanine site and model selection in recent years.
DNA Methylation
;
Forensic Genetics/methods*
;
CpG Islands
;
Forensic Medicine
3.Advances in epigenetic regulation of Chinese hamster ovary cells.
Lulu YANG ; Miao ZHANG ; Xi ZHANG ; Xiaoyin WANG ; Tianyun WANG ; Yanlong JIA
Chinese Journal of Biotechnology 2023;39(1):149-158
Chinese hamster ovary (CHO) cells play an irreplaceable role in biopharmaceuticals because the cells can be adapted to grow in suspension cultures and are capable of producing high quality biologics exhibiting human-like post-translational modifications. However, gene expression regulation such as transgene silencing and epigenetic modifications may reduce the recombinant protein production due to the decrease of expression stability of CHO cells. This paper summarized the role of epigenetic modifications in CHO cells, including DNA methylation, histone modification and miRNA, as well as their effects on gene expression regulation.
Cricetinae
;
Animals
;
Humans
;
Cricetulus
;
CHO Cells
;
Epigenesis, Genetic/genetics*
;
DNA Methylation
;
Gene Expression Regulation
;
Recombinant Proteins/genetics*
4.Research Progress on Epigenetics in Endometriosis.
Rui-Hui LU ; Jing-Wen ZHU ; Qing XUE
Acta Academiae Medicinae Sinicae 2023;45(1):124-128
Epigenetics refers to heritable changes in gene expression and function without alterations in gene sequences,including DNA methylation,histone modification,and non-coding RNAs.Endometriosis is a benign gynecological disease that affects the fertility and health of reproductive-age women,the etiology of which remains unclear.The recent studies have demonstrated that epigenetics plays a key role in the occurrence and development of endometriosis.This article reviews the research progress in the regulatory mechanism and application of epigenetics in endometriosis.
Female
;
Humans
;
Endometriosis/genetics*
;
Epigenesis, Genetic
;
DNA Methylation
;
Protein Processing, Post-Translational
5.Influence of E-cadherin methylation on prognosis in children with acute lymphoblastic leukemia.
Feng-Qi QI ; Wei HAN ; Jing YAN ; Cong XIN ; Yan LI ; Lei GUO ; Wen-Peng WANG ; Ji-Zhao GAO
Chinese Journal of Contemporary Pediatrics 2023;25(1):46-50
OBJECTIVES:
To study the significance of E-cadherin and the association between E-cadherin methylation status and prognosis in children with acute lymphoblastic leukemia (ALL) by examining the mRNA and protein expression of E-cadherin and its gene methylation status in bone marrow mononuclear cells of children with ALL.
METHODS:
The samples of 5 mL bone marrow blood were collected from 42 children with ALL who were diagnosed for the first time at diagnosis (pre-treatment group) and on day 33 of induction chemotherapy (post-treatment group). RT-qPCR, Western blot, and methylation-specific PCR were used to measure the mRNA and protein expression of E-cadherin and the methylation level of the E-cadherin gene. The changes in each index after induction chemotherapy were compared.
RESULTS:
The mRNA and protein expression levels of E-cadherin in the post-treatment group were significantly higher than those in the pre-treatment group (P<0.05), while the positive rate of E-cadherin gene methylation in the post-treatment group was significantly lower than that in the pre-treatment group (P<0.05). At the end of the test, the children with negative methylation had significantly higher overall survival rate and event-free survival rate than those with positive methylation (P<0.05).
CONCLUSIONS
E-cadherin expression is associated with the development of ALL in children, and its decreased expression and increased methylation level may indicate a poor prognosis.
Child
;
Humans
;
Cadherins/genetics*
;
DNA Methylation
;
Precursor Cell Lymphoblastic Leukemia-Lymphoma/genetics*
;
Prognosis
;
RNA, Messenger
6.Research Progress of DNA Methylation in Cisplatin Resistance in Lung Cancer.
Chinese Journal of Lung Cancer 2023;26(1):52-58
As one of the most common malignant tumors, lung cancer poses a serious threat to human life and health. The platinum-based drug cisplatin (DDP) is used as the first-line treatment for lung cancer. The poor prognosis of lung cancer is mostly due to developed resistance to cisplatin, which poses a serious treatment challenge. The mechanism of cisplatin resistance is complex and unclear. Numerous studies have shown that DNA methylation plays a crucial role in the emergence of lung cancer cisplatin resistance. DNA hypermethylation results in the deactivation of numerous drug resistance genes and tumor suppressor genes through a change in chromatin conformation. Finding new therapeutic targets and indicators to predict the therapeutic effect can be aided by elucidating the complex mechanism. In order to discover novel strategies to overcome cisplatin resistance in lung cancer, this paper discusses DNA methylation-mediated cisplatin resistance and offers an overview of current demethylation procedures.
.
Humans
;
Antineoplastic Agents/therapeutic use*
;
Cell Line, Tumor
;
Cisplatin/therapeutic use*
;
DNA Methylation
;
Drug Resistance, Neoplasm/genetics*
;
Gene Expression Regulation, Neoplastic
;
Lung Neoplasms/pathology*
7.The critical importance of epigenetics in autoimmune-related skin diseases.
Frontiers of Medicine 2023;17(1):43-57
Autoimmune-related skin diseases are a group of disorders with diverse etiology and pathophysiology involved in autoimmunity. Genetics and environmental factors may contribute to the development of these autoimmune disorders. Although the etiology and pathogenesis of these disorders are poorly understood, environmental variables that induce aberrant epigenetic regulations may provide some insights. Epigenetics is the study of heritable mechanisms that regulate gene expression without changing DNA sequences. The most important epigenetic mechanisms are DNA methylation, histone modification, and noncoding RNAs. In this review, we discuss the most recent findings regarding the function of epigenetic mechanisms in autoimmune-related skin disorders, including systemic lupus erythematosus, bullous skin diseases, psoriasis, and systemic sclerosis. These findings will expand our understanding and highlight the possible clinical applications of precision epigenetics approaches.
Humans
;
Autoimmune Diseases/genetics*
;
Epigenesis, Genetic
;
Lupus Erythematosus, Systemic/genetics*
;
DNA Methylation
;
Psoriasis/genetics*
9.Association Analysis Between Methylation of SCARB1 Gene Promoter and Coronary Heart Disease.
Wei LI ; Zhen-Hua WANG ; Peng SHI ; Song XUE
Acta Academiae Medicinae Sinicae 2023;45(3):405-409
Objective To explore the relationship between scavenger receptor class B member 1 (SCARB1) gene promoter methylation and the pathogenesis of coronary artery disease. Methods A total of 120 patients with coronary heart disease treated in Renji Hospital affiliated to Shanghai Jiao Tong University School of Medicine from December 2018 to May 2020 were selected as the case group,while 140 gender and age matched healthy participants were randomly selected as the control group for a case-control study.The methylation status was detected by high-throughput target sequencing after bisulfite converting,and the methylation of CpG sites in the promoter region of SCARB1 gene was compared between the two groups. Results The case group showed higher methylation level of SCARB1+67 and lower methylation level of SCARB1+134 than the control group (both P<0.001),and the differences remained statistically significant in men (both P<0.001) and women (both P<0.001).The overall methylation level in the case group was lower than that in the control group [(80.27±2.14)% vs.(81.11±1.27)%;P=0.006],while this trend was statistically significant only in men (P=0.002). Conclusion The methylation of SCARB1 gene promotor is associated with the pathogenesis and may participate in the occurrence and development of coronary heart disease.
Male
;
Humans
;
Female
;
Methylation
;
Case-Control Studies
;
China
;
Coronary Artery Disease/genetics*
;
Promoter Regions, Genetic
;
DNA Methylation
;
Scavenger Receptors, Class B/genetics*
10.Clinical Significance of SFRP1 Gene Methylation in Patients with Childhood Acute Lymphoblastic Leukemia.
Jing YAN ; Wen-Peng WANG ; Xuan LI ; Wei HAN ; Feng-Qi QI ; Ji-Zhao GAO
Journal of Experimental Hematology 2023;31(2):377-382
OBJECTIVE:
To investigate the clinical significance of SFRP1 gene and its methylation in childhood acute lymphoblastic leukemia (ALL) .
METHODS:
Methylation-specific PCR (MSP) was used to detect the methylation status of SFRP1 gene in bone marrow mononuclear cells of 43 children with newly diagnosed ALL before chemotherapy (primary group) and when the bone marrow reached complete remission d 46 after induction of remission chemotherapy (remission group), the expression of SFRP1 mRNA was detected by quantitative real-time polymerase chain reaction (qRT-PCR), the expression of SFRP1 protein was detected by Western blot, and clinical data of children were collected, the clinical significance of SFRP1 gene methylation in children with ALL was analyze.
RESULTS:
The positive rate of SFRP1 gene promoter methylation in the primary group (44.19%) was significantly higher than that in the remission group (11.63%) (χ2=11.328, P<0.05). The relative expression levels of SFRP1 mRNA and protein in bone marrow mononuclear cells of children in the primary group were significantly lower than those in the remission group (P<0.05). Promoter methylation of SFRP1 gene was associated with risk level (χ2=15.613, P=0.000) and survival of children (χ2=6.561, P=0.010) in the primary group, children with SFRP1 hypermethylation had significantly increased risk and shortened event-free survival time, but no significant difference in other clinical data.
CONCLUSION
Hypermethylation of SFRP1 gene promoter may be involved in the development of childhood ALL, and its hypermethylation may be associated with poor prognosis.
Child
;
Humans
;
Clinical Relevance
;
DNA Methylation
;
Precursor Cell Lymphoblastic Leukemia-Lymphoma/genetics*
;
Bone Marrow/metabolism*
;
RNA, Messenger/metabolism*
;
Membrane Proteins/genetics*
;
Intercellular Signaling Peptides and Proteins/metabolism*

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