1.Genetic characteristic analysis of slight-to-moderate sensorineural hearing loss in children.
Rui ZHOU ; Jing GUAN ; Qiuju WANG
Journal of Clinical Otorhinolaryngology Head and Neck Surgery 2024;38(1):18-22
Objective:To analyze genetic factors and phenotype characteristics in pediatric population with slight-to-moderate sensorineural hearing loss. Methods:Children with slight-to-moderate sensorineural hearing loss of and their parents, enrolled from the Chinese Deafness Genome Project, were studied. Hearing levels were assessed using pure tone audiometry, behavioral audiometry, auditory steady state response(ASSR), auditory brainstem response(ABR) thresholds, and deformed partial otoacoustic emission(DPOAE). Classification of hearing loss is according to the 2022 American College of Medical Genetics and Genomics(ACMG) Clinical Practice Guidelines for Hearing Loss. Whole exome sequencing(WES) and deafness gene Panel testing were performed on peripheral venous blood from probands and validations were performed on their parents by Sanger sequencing. Results:All 134 patients had childhood onset, exhibiting bilateral symmetrical slight-to-moderate sensorineural hearing loss, as indicated by audiological examinations. Of the 134 patients, 29(21.6%) had a family history of hearing loss, and the rest were sporadic patients. Genetic causative genes were identified in 66(49.3%) patients. A total of 11 causative genes were detected, of which GJB2 was causative in 34 cases(51.5%), STRC in 10 cases(15.1%), MPZL2 gene in six cases(9.1%), and USH2A in five cases(7.6%).The most common gene detected in slight-to-moderate hearing loss was GJB2, with c. 109G>A homozygous mutation found in 16 cases(47.1%) and c. 109G>A compound heterozygous mutation in 9 cases(26.5%). Conclusion:This study provides a crucial genetic theory reference for early screening and detection of mild to moderate hearing loss in children, highlighting the predominance of recessive inheritance and the significance of gene like GJB2, STRC, MPZL2, USH2A.
Humans
;
Child
;
Connexins/genetics*
;
Connexin 26/genetics*
;
Hearing Loss, Sensorineural/diagnosis*
;
Mutation
;
Usher Syndromes
;
Hearing Loss, Bilateral
;
Audiometry, Pure-Tone
;
Intercellular Signaling Peptides and Proteins
2.Distribution characteristics and correlation analysis of GJB2 variation in patients with auditory neuropathy.
Yiming LI ; Hongyang WANG ; Danyang LI ; Qiuju WANG
Journal of Clinical Otorhinolaryngology Head and Neck Surgery 2024;38(1):23-29
Objective:To elucidate the correlation between the GJB2 gene and auditory neuropathy, aiming to provide valuable insights for genetic counseling of affected individuals and their families. Methods:The general information, audiological data(including pure tone audiometry, distorted otoacoustic emission, auditory brainstem response, electrocochlography), imaging data and genetic test data of 117 auditory neuropathy patients, and the patients with GJB2 gene mutation were screened out for the correlation analysis of auditory neuropathy. Results:Total of 16 patients were found to have GJB2 gene mutations, all of which were pathogenic or likely pathogenic.was Among them, one patient had compound heterozygous variants GJB2[c. 427C>T][c. 358_360del], exhibiting total deafness. One was GJB2[c. 299_300delAT][c. 35_36insG]compound heterozygous variants, the audiological findings were severe hearing loss.The remaining 14 patients with GJB2 gene variants exhibited typical auditory neuropathy. Conclusion:In this study, the relationship between GJB2 gene and auditory neuropathy was preliminarily analyzed,and explained the possible pathogenic mechanism of GJB2 gene variants that may be related to auditory neuropathy.
Humans
;
Connexins/genetics*
;
Connexin 26/genetics*
;
Hearing Loss, Central/genetics*
;
Deafness/genetics*
;
Mutation
3.A prospective study of genetic screening of 2 060 neonates by high-throughput sequencing.
Danyan ZHUANG ; Fei WANG ; Shuxia DING ; Zhoushu ZHENG ; Qi YU ; Lanqiu LYU ; Shuni SUN ; Rulai YANG ; Wenwen QUE ; Haibo LI
Chinese Journal of Medical Genetics 2023;40(6):641-647
OBJECTIVE:
To assess the value of genetic screening by high-throughput sequencing (HTS) for the early diagnosis of neonatal diseases.
METHODS:
A total of 2 060 neonates born at Ningbo Women and Children's Hospital from March to September 2021 were selected as the study subjects. All neonates had undergone conventional tandem mass spectrometry metabolite analysis and fluorescent immunoassay analysis. HTS was carried out to detect the definite pathogenic variant sites with high-frequency of 135 disease-related genes. Candidate variants were verified by Sanger sequencing or multiplex ligation-dependent probe amplification (MLPA).
RESULTS:
Among the 2 060 newborns, 31 were diagnosed with genetic diseases, 557 were found to be carriers, and 1 472 were negative. Among the 31 neonates, 5 had G6PD, 19 had hereditary non-syndromic deafness due to variants of GJB2, GJB3 and MT-RNR1 genes, 2 had PAH gene variants, 1 had GAA gene variants, 1 had SMN1 gene variants, 2 had MTTL1 gene variants, and 1 had GH1 gene variants. Clinically, 1 child had Spinal muscular atrophy (SMA), 1 had Glycogen storage disease II, 2 had congenital deafness, and 5 had G6PD deficiency. One mother was diagnosed with SMA. No patient was detected by conventional tandem mass spectrometry. Conventional fluorescence immunoassay had revealed 5 cases of G6PD deficiency (all positive by genetic screening) and 2 cases of hypothyroidism (identified as carriers). The most common variants identified in this region have involved DUOX2 (3.93%), ATP7B (2.48%), SLC26A4 (2.38%), GJB2 (2.33%), PAH (2.09%) and SLC22A5 genes (2.09%).
CONCLUSION
Neonatal genetic screening has a wide range of detection and high detection rate, which can significantly improve the efficacy of newborn screening when combined with conventional screening and facilitate secondary prevention for the affected children, diagnosis of family members and genetic counseling for the carriers.
Child
;
Infant, Newborn
;
Humans
;
Female
;
Prospective Studies
;
Connexins/genetics*
;
Connexin 26/genetics*
;
Glucosephosphate Dehydrogenase Deficiency
;
Mutation
;
Sulfate Transporters/genetics*
;
DNA Mutational Analysis
;
Genetic Testing/methods*
;
Deafness/genetics*
;
Neonatal Screening/methods*
;
Hearing Loss, Sensorineural/genetics*
;
High-Throughput Nucleotide Sequencing
;
Solute Carrier Family 22 Member 5/genetics*
4.Results of combined newborn hearing and deafness gene screening in Yuncheng area of Shanxi Province.
Hongqin HE ; Li SU ; Jia XU ; Yiwen WANG ; Yarong WANG ; Cui GUO ; Dandan LINGHU
Chinese Journal of Medical Genetics 2023;40(7):815-820
OBJECTIVE:
To analyze the clinical significance of combined newborn hearing and deafness gene screening in Yuncheng area of Shanxi Province.
METHODS:
Results of audiological examinations, including transient evoked otoacoustic emission and automatic discriminative auditory brainstem evoked potentials, for 6 723 newborns born in Yuncheng area from January 1, 2021 to December 31, 2021, were retrospectively analyzed. Those who failed one of the tests were considered to have failed the examination. A deafness-related gene testing kit was used to detect 15 hot spot variants of common deafness-associated genes in China including GJB2, SLC26A4, GJB3, and mtDNA12S rRNA. Neonates who had passed the audiological examinations and those who had not were compared using a chi-square test.
RESULTS:
Among the 6 723 neonates, 363 (5.40%) were found to carry variants. These have included 166 cases (2.47%) with GJB2 gene variants, 136 cases (2.03%) with SLC26A4 gene variants, 26 cases (0.39%) with mitochondrial 12S rRNA gene variants, and 33 cases (0.49%) with GJB3 gene variants. Among the 6 723 neonates, 267 had failed initial hearing screening, among which 244 had accepted a re-examination, for which 14 cases (5.73%) had failed again. This has yielded an approximate prevalence of hearing disorder of 0.21% (14/6 723). Among 230 newborns who had passed the re-examination, 10 (4.34%) were found to have carried a variant. By contrast, 4 out of the 14 neonates (28.57%) who had failed the re-examination had carried a variant, and there was a significant difference between the two groups (P < 0.05).
CONCLUSION
Genetic screening can provide an effective supplement to newborn hearing screening, and the combined screening can provide a best model for the prevention of hearing loss, which can enable early detection of deafness risks, targeted prevention measures, and genetic counseling to provide accurate prognosis for the newborns.
Infant, Newborn
;
Humans
;
Connexins/genetics*
;
Retrospective Studies
;
Deafness/genetics*
;
Connexin 26/genetics*
;
Neonatal Screening/methods*
;
Mutation
;
Genetic Testing/methods*
;
China/epidemiology*
;
Hearing
;
DNA Mutational Analysis
5.A novel variant in the GJB6 gene in a large Chinese family with a unique phenotype of Clouston syndrome.
Hequn HUANG ; Mengyun CHEN ; Xia LIU ; Xixi XIONG ; Lanbo ZHOU ; Zhonglan SU ; Yan LU ; Bo LIANG
Frontiers of Medicine 2023;17(2):330-338
Clouston syndrome (OMIM #129500), also known as hidrotic ectodermal dysplasia type 2, is a rare autosomal dominant skin disorder. To date, four mutations in the GJB6 gene, G11R, V37E, A88V, and D50N, have been confirmed to cause this condition. In previous studies, the focus has been mainly on gene sequencing, and there has been a lack of research on clinical manifestations and pathogenesis. To confirm the diagnosis of this pedigree at the molecular level and summarize and analyse the clinical phenotype of patients and to provide a basis for further study of the pathogenesis of the disease, we performed whole-exome and Sanger sequencing on a large Chinese Clouston syndrome pedigree. Detailed clinical examination included histopathology, hair microscopy, and scanning electron microscopy. We found a novel heterozygous missense variant (c.134G>C:p.G45A) for Clouston syndrome. We identified a new clinical phenotype involving all nail needling pain in all patients and found a special honeycomb hole structure in the patients' hair under scanning electron microscopy. Our data reveal that a novel variant (c.134G>C:p.G45A) plays a likely pathogenic role in this pedigree and highlight that genetic testing is necessary for the diagnosis of Clouston syndrome.
Humans
;
Connexin 30/genetics*
;
Connexins/genetics*
;
East Asian People
;
Ectodermal Dysplasia/pathology*
;
Phenotype
6.Analysis of result of gene screening of neonatal deafness in Huizhou and surrounding urban areas.
Yun ZENG ; Xuanting LU ; Lifang WU ; Yan ZHENG
Chinese Journal of Medical Genetics 2021;38(12):1176-1179
OBJECTIVE:
To detect common pathogenic variants associated with congenital deafness among neonates from Huizhou and surrounding areas and discuss its implications.
METHODS:
Thirteen hot-spot mutations in four most common pathogenic genes were screened among 20 934 neonates from March 2017 to December 2019.
RESULTS:
In total 760 neonates were found to carry common pathogenic variants (3.63%). Sixty two neonates have carried homozygous/compound heterozygous variants or homoplasmy/heteroplasmy mutations of mtDNA (0.29%). Further analysis of five abnormal cases revealed that 3 of them have carried compound heterozygous mutations of GJB2 gene, and 2 were due to compound heterozygous variants of the CDH23 gene.
CONCLUSION
Genetic testing has a great clinical significance for the prevention and reduction of congenital hearing loss, but the scope needs to be updated and redefined by removing mutation sites with a very low rate, adding new significant sites, and improvement of the technical strategies.
Connexin 26
;
Connexins/genetics*
;
DNA Mutational Analysis
;
Deafness/genetics*
;
Genetic Testing
;
Hearing Loss/genetics*
;
Humans
;
Infant, Newborn
;
Mutation
;
Neonatal Screening
7.Result of Sanger sequencing for newborn carriers of single heterozygous variants of GJB2 or SLC26A4 gene by genechip analysis.
Jun HE ; Yang NA ; Jiyang LIU
Chinese Journal of Medical Genetics 2020;37(11):1213-1216
OBJECTIVE:
To detect additional variants for newborn carriers of single heterozygous variants of the GJB2 or SLC26A4 gene by genechip analysis in Changsha area, and explore the variation spectrum of deafness-related genes in this region.
METHODS:
For 462 newborns carrying single heterozygous variants of the GJB2 or SLC26A4 gene, all exons of the genes were subjected to Sanger sequencing. The pathogenicity of the variants was analyzed by database and literature search.
RESULTS:
For 305 newborns carrying a heterozygous GJB2 variant, 143 (46.49%) were found to carry additional variants, including 29 (9.51%) with c.109G>A likely pathogenic variant, and 1 (6.48%) with c.551G>A pathogenic variant. Among 153 newborns carrying single heterozygous variant of the SLC26A4 gene, 2 (1.31%) were found with a c.281C>T variant, and 1 (0.65%) with a c.1547_1548ins pathogenic variant. Among 4 newborns simultaneously carrying GJB2 and SLC26A4 variants, two were found to carry c.109G>A and c.844T>C variants (clinical significance unknown), respectively.
CONCLUSION
For newborns carrying single heterozygous variants of the GJB2 or SLC26A4 gene by genechip analysis, the detection rate for other variants is quite high. Sanger sequencing can significantly improve the detection rate of high-risk newborns and enrich the variant spectrum of deafness genes.
Connexins/genetics*
;
DNA Mutational Analysis
;
Deafness/genetics*
;
Genetic Carrier Screening
;
Heterozygote
;
Humans
;
Infant, Newborn
;
Mutation
;
Oligonucleotide Array Sequence Analysis
;
Sulfate Transporters/genetics*
8.Connexin43 Modulates X-Ray-Induced Pyroptosis in Human Umbilical Vein Endothelial Cells.
Chen LI ; Mei TIAN ; Qiao GOU ; Yong Rui JIA ; Xu SU
Biomedical and Environmental Sciences 2019;32(3):177-188
OBJECTIVE:
Pyroptosis is an inflammatory form of programmed cell death. This phenomenon has been recently reported to play an important role in radiation-induced normal tissue injury. Connexin43 (Cx43) is a gap junction protein that regulates cell growth and apoptosis. In this study, we investigated the effect of Cx43 on X-ray-induced pyroptosis in the human umbilical vein endothelial cells (HUVECs).
METHODS:
HUVECs, Cx43 overexpression, and Cx43 knockdown strains were irradiated with 10 Gy. Proteins were detected using western blot analysis. Cell pyroptosis was evaluated using the fluorescence-labeled inhibitor of caspase assay (FLICA) and propidium iodide staining through flow cytometry and confocal microscopy. Cell morphology and cytotoxicity were detected by scanning electron microscopy and lactate dehydrogenase release assay, respectively.
RESULTS:
Irradiation with 10 Gy X-ray induced pyroptosis in the HUVECs and reduced Cx43 expression. The pyroptosis in the HUVECs was significantly attenuated by overexpression of Cx43 as it decreased the level of active caspase-1. However, interference of Cx43 expression with siRNA significantly promoted pyroptosis by increasing the active caspase-1 level. Pannexin1 (Panx1), a gap junction protein regulates pyroptosis, and its cleaved form is used to evaluate channel opening and active state. The level of cleaved Panx1 in the HUVECs and Cx43 knockdown strains increased in the presence of X-ray, but decreased in the Cx43 overexpression strains. Furthermore, interference of Panx1 with siRNA alleviated the upregulation of pyroptosis caused by Cx43 knockdown.
CONCLUSION
Results suggest that single high-dose X-ray irradiation induces pyroptosis in the HUVECs. In addition, Cx43 regulates pyroptosis directly by activating caspase-1 or indirectly by cleaving Panx1.
Caspase 1
;
genetics
;
metabolism
;
Connexin 43
;
genetics
;
metabolism
;
Connexins
;
genetics
;
metabolism
;
Gene Expression Regulation
;
radiation effects
;
Human Umbilical Vein Endothelial Cells
;
physiology
;
radiation effects
;
Humans
;
Nerve Tissue Proteins
;
genetics
;
metabolism
;
Pyroptosis
;
X-Rays
;
adverse effects
9.Mutational analysis of 117 patients with non-syndromic hearing loss.
Leilei WANG ; Ying GU ; Shuting YANG ; Huafen MAO ; Xinxin TANG ; Tianlong XU ; Min WU ; Yuhua SUN ; Xiucui LUO
Chinese Journal of Medical Genetics 2019;36(2):108-111
OBJECTIVE:
To determine the frequencies of deafness gene mutations among patients with non-syndromic hearing loss (NSHL) from northern Jiangsu province.
METHODS:
A total of 117 patients with NSHL were enrolled. The coding region of GJB2 gene, IVS7-2A>G and 2168A>G mutations of SLC26A4 gene, and 1555A>G and 1494C>T mutations of mitochondrial DNA 12S rRNA were subjected to Sanger sequencing. Patients in whom no mutation was detected were further tested by targeted gene capture and high-throughput sequencing.
RESULTS:
Among the 117 patients, 86 (73.50%) were found to carry mutations. GJB2 gene mutations were found in 61 patients (52.14%), including 22 (18.80%) with homozygous mutations and 39 (33.33%) with heterozygous mutations. SLC26A4 gene mutations were found in 19 patients (16.24%), including 4 (3.42%) with homozygous mutations and 15 with heterozygous mutations (14.53%). Mitochondrial 12S rRNA gene mutation was found in 6 patients (5.13%). Targeted gene capture and high-throughput sequencing of 8 patients identified 4 further cases, including 1 with RDX gene 129_130del and 76_79del compound heterozygous mutations, 1 with OTOF gene 1274G>C homozygous mutation, 1 with SLC26A4 gene 919-2A>G and IVS16-6G>A compound heterozygous mutation, and 1 with SLC26A4 gene 919-2A>G and A1673T compound heterozygous mutation.
CONCLUSION
The frequency of mutation among patients with NSHL from north Jiangsu was 73.50%, and GJB2 gene was most commonly mutated.
China
;
Connexins
;
DNA Mutational Analysis
;
DNA, Mitochondrial
;
Hearing Loss
;
genetics
;
Humans
;
Membrane Proteins
;
Mutation
;
Sulfate Transporters
10.Application of next generation sequencing and Sanger sequencing in a pedigree affected with hereditary non-syndromic deafness.
Shumin REN ; Xiangdong KONG ; Huirong SHI
Chinese Journal of Medical Genetics 2018;35(6):864-867
OBJECTIVE:
To detect potential mutation in a pedigree affected with autosomal recessive non-syndromic deafness.
METHODS:
Mutation analysis was carried out by next generation sequencing, and suspected mutations were verified by Sanger sequencing.
RESULTS:
A heterozygous c.235delC mutation of the GJB2 gene, together with compound heterozygous mutations of the OTOF gene [c.1194T>A (p.D398E) and c.2180A>G (p.N727S)] were detected in the proband. The sister of the proband (also had hearing loss) has carried a heterozygous c.235delC mutation in the GJB2 gene, in addition with a heterozygous c.2180A>G(p.N727S) mutation of the OTOF gene. By Sanger sequencing, a heterozygous IVS1+2T>A mutation was further detected in the non-coding region of the GJB2 gene in both sisters.
CONCLUSION
The compound heterozygous c.235delC and IVS1+2T>A mutations of the GJB2 gene probably account for the hearing loss in the two sisters, among which IVS1+2T>A is considered as a novel pathogenic mutation of the GJB2 gene.
Connexins
;
genetics
;
DNA Mutational Analysis
;
Female
;
Hearing Loss, Sensorineural
;
genetics
;
High-Throughput Nucleotide Sequencing
;
Humans
;
Membrane Proteins
;
genetics
;
Mutation
;
Pedigree

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