1.Cryo-EM structures for the Mycobacterium tuberculosis iron-loaded siderophore transporter IrtAB.
Shan SUN ; Yan GAO ; Xiaolin YANG ; Xiuna YANG ; Tianyu HU ; Jingxi LIANG ; Zhiqi XIONG ; Yuting RAN ; Pengxuan REN ; Fang BAI ; Luke W GUDDAT ; Haitao YANG ; Zihe RAO ; Bing ZHANG
Protein & Cell 2023;14(6):448-458
The adenosine 5'-triphosphate (ATP)-binding cassette (ABC) transporter, IrtAB, plays a vital role in the replication and viability of Mycobacterium tuberculosis (Mtb), where its function is to import iron-loaded siderophores. Unusually, it adopts the canonical type IV exporter fold. Herein, we report the structure of unliganded Mtb IrtAB and its structure in complex with ATP, ADP, or ATP analogue (AMP-PNP) at resolutions ranging from 2.8 to 3.5 Å. The structure of IrtAB bound ATP-Mg2+ shows a "head-to-tail" dimer of nucleotide-binding domains (NBDs), a closed amphipathic cavity within the transmembrane domains (TMDs), and a metal ion liganded to three histidine residues of IrtA in the cavity. Cryo-electron microscopy (Cryo-EM) structures and ATP hydrolysis assays show that the NBD of IrtA has a higher affinity for nucleotides and increased ATPase activity compared with IrtB. Moreover, the metal ion located in the TM region of IrtA is critical for the stabilization of the conformation of IrtAB during the transport cycle. This study provides a structural basis to explain the ATP-driven conformational changes that occur in IrtAB.
Siderophores/metabolism*
;
Iron/metabolism*
;
Mycobacterium tuberculosis/metabolism*
;
Cryoelectron Microscopy
;
Adenosine Triphosphate/metabolism*
;
ATP-Binding Cassette Transporters
2.Cefiderocol: a novel siderophore cephalosporin against multi-drug resistant Gram-negative bacilli infections.
Junyang KUAI ; Xiaojuan WANG ; Hui WANG
Chinese Journal of Biotechnology 2022;38(3):990-1003
Antimicrobial resistance is one of the critical public health issues in the world. There is an urgent need to develop effective broad-spectrum antibiotics to treat the infection of multi-drug resistant Gram-negative bacilli. Cefiderocol, developed by the Shionogi Inc. in Japan, is a new type of iron carrier cephalosporin antibiotics, which overcomes the drug resistance of Gram-negative bacilli due to the down-regulation of outer membrane pore protein and the up-regulation of efflux pump, and has good stability to serine- and metallo-carbapenemases. This drug has a broad spectrum and strong antibacterial activity against carbapenem-resistant Enterobacteriaceae (CRE), Pseudomonas aeruginosa, Acinetobacter baumannii, and Stenotrophomonas maltophilia. Cefiderocol can be used to treat complex urinary tract infections (including pyelonephritis), hospital-acquired pneumonia, and ventilator-associated pneumonia. By summarizing the chemical structure, antibacterial mechanism, in vitro antibacterial activity, pharmacokinetics, pharmacodynamics, and clinical treatment of cefiderocol, this review shows the application potential of cefiderocol as a new iron carrier cephalosporin in the treatment of multi-drug resistant Gram-negative bacilli infections.
Cephalosporins/therapeutic use*
;
Gram-Negative Bacteria
;
Microbial Sensitivity Tests
;
Siderophores/pharmacology*
3.A zero-sum game or an interactive frame? Iron competition between bacteria and humans in infection war.
Zhenchao WU ; Jiqi SHAO ; Jiajia ZHENG ; Beibei LIU ; Zhiyuan LI ; Ning SHEN
Chinese Medical Journal 2022;135(16):1917-1926
Iron is an essential trace element for both humans and bacteria. It plays a vital role in life, such as in redox reactions and electron transport. Strict regulatory mechanisms are necessary to maintain iron homeostasis because both excess and insufficient iron are harmful to life. Competition for iron is a war between humans and bacteria. To grow, reproduce, colonize, and successfully cause infection, pathogens have evolved various mechanisms for iron uptake from humans, principally Fe 3+ -siderophore and Fe 2+ -heme transport systems. Humans have many innate immune mechanisms that regulate the distribution of iron and inhibit bacterial iron uptake to help resist bacterial invasion and colonization. Meanwhile, researchers have invented detection test strips and coupled antibiotics with siderophores to create tools that take advantage of this battle for iron, to help eliminate pathogens. In this review, we summarize bacterial and human iron metabolism, competition for iron between humans and bacteria, siderophore sensors, antibiotics coupled with siderophores, and related phenomena. We also discuss how competition for iron can be used for diagnosis and treatment of infection in the future.
Humans
;
Siderophores/metabolism*
;
Iron/metabolism*
;
Bacteria
;
Anti-Bacterial Agents/pharmacology*
;
Biological Transport
4.In vitro screening of siderophore-producing rice root endophytic bacteria from up-land paddies in north-western Vietnam for plant growth-promoting activities
Van Phuong Nguyen ; Thi Phuong Nga Mai ; Duc Chung Mai ; Hoang Ha Chu ; Tran Binh Le
Malaysian Journal of Microbiology 2022;18(1):17-26
Aims:
Endophytic bacteria (EB) living inside plant tissues possess different beneficial traits including siderophore production and other plant growth-promoting (PGP) activities. Siderophore-producing EB promote host plant growth by secreting ferrum in iron-deficient conditions. This study screened 19 siderophore producers in vitro, isolated from upland rice roots grown in mountain farms of Tung Village, Nậm Có Commune, Mù Cang Chải District, Yên Bái Province, Vietnam, for PGP traits, including phosphate solubilisation, indole-3-acetic acid (IAA), ammonia, gelatinase, amylase and catalase production.
Methodology and results:
The bacteria were identified by Matrix assisted Laser Desorption Ionization Time of Flight mass spectrometry (MALDI-TOF MS). All 19 isolates were identified as genera Pseudomonas, Enterobacter, Pantoe, Bacillus, Burkholderia, Staphylococcus, Ralstonia and Cronotacter. The isolates produced catalase and ammonia. The amount of ammonia ranged from 60.74 ± 0.14 to 466.72 ± 0.18 mg/L. Out of the 19 siderophore producers, 17 (89.47%) were able to solubilise phosphate with solubilisation index (PSI) ranging from 1.12 ± 0.07 to 2.14 ± 0.15. The qualitative assays identified 12 isolates (63.15%) positive for IAA production with a tryptophan concentration of 5 mM, whereas 15 (78.94%) and 17 (89.47%) isolates were positive for gelatin and starch hydrolysis, respectively. Especially, 7 isolates were found to be positive for all tested assays in vitro including Pseudomonas rhodesiae (NC2), Enterobacter asburiae (NC50), Pantoea ananatis (NC63), Bacillus cereus (NC64), Burkholderia cenocepacia (NC110), Staphylococcus sciuri (NC112) and Ralstonia pickettii (NC122).
Conclusion, significance and impact of study
This study serves as crucial findings of multi-trait plant growth-promoting endophytic bacteria isolated from upland rice root in north-western Vietnam. The seven potential isolates positive for all tested assays could be effective PGP bacteria for bio-inoculants.
Oryza--microbiology
;
Siderophores
;
Plant Growth Regulators
;
Vietnam
5.Progress of Coordination and Utilization of Zirconium-89 for Positron Emission Tomography (PET) Studies
Minh Thanh LA ; Van Hieu TRAN ; Hee Kwon KIM
Nuclear Medicine and Molecular Imaging 2019;53(2):115-124
Radiometals have been commonly used in medical applications, and utilization of such metals continues to be an attractive research area. In particular, a variety of radiometals have been developed and implemented for molecular imaging. For such applications, ⁸⁹Zr has been one of the most interesting radiometals currently used for tumor targeting. Several chemical ligands were developed as ⁸⁹Zr chelators, and new coordinating methods have also been developed more recently. In addition, immunopositron emission tomography (PET) studies using ⁸⁹Zr-labeled monoclonal antibodies have been performed by several scientists. In this review, recent advances to the coordination of ⁸⁹Zr and the utilization of ⁸⁹Zr in PET studies are described.
Antibodies, Monoclonal
;
Chelating Agents
;
Electrons
;
Ligands
;
Metals
;
Molecular Imaging
;
Positron-Emission Tomography
6.Identification of a novel strain, Streptomyces blastmyceticus JZB130180, and evaluation of its biocontrol efficacy against Monilinia fructicola.
Mi NI ; Qiong WU ; Hong-Li WANG ; Wei-Cheng LIU ; Bin HU ; Dian-Peng ZHANG ; Juan ZHAO ; De-Wen LIU ; Cai-Ge LU
Journal of Zhejiang University. Science. B 2019;20(1):84-94
Peach brown rot, caused by Monilinia fructicola, is one of the most serious peach diseases. A strain belonging to the Actinomycetales, named Streptomyces blastmyceticus JZB130180, was found to have a strong inhibitory effect on M. fructicola in confrontation culture. Following the inoculation of peaches in vitro, it was revealed that the fermentation broth of S. blastmyceticus JZB130180 had a significant inhibitory effect on disease development by M. fructicola. The fermentation broth of S. blastmyceticus JZB130180 had an EC50 (concentration for 50% of maximal effect) of 38.3 µg/mL against M. fructicola, as determined in an indoor toxicity test. Analysis of the physicochemical properties of the fermentation broth revealed that it was tolerant of acid and alkaline conditions, temperature, and ultraviolet radiation. In addition, chitinase, cellulase, and protease were also found to be secreted by the strain. The results of this study suggest that S. blastmyceticus JZB130180 may be used for the biocontrol of peach brown rot.
Ascomycota/pathogenicity*
;
Bacterial Proteins/metabolism*
;
Cell Wall/metabolism*
;
Cellulase/metabolism*
;
Chitinases/metabolism*
;
Fermentation
;
Fruit/microbiology*
;
Pest Control, Biological/methods*
;
Phylogeny
;
Plant Diseases/prevention & control*
;
Prunus persica/microbiology*
;
Siderophores/metabolism*
;
Streptomyces/physiology*
7.Chelating effects of siderophore in reducing organ dysfunction caused by iron overload in ICR Mice
Thucydides L. Salunga ; Isabella R. Panelo ; Joel C. Cornista
Philippine Journal of Health Research and Development 2019;23(4):47-57
Background and Objectives:
Iron is an essential element that plays a vital role in a wide variety of cellular
processes. But when present in excess concentration in organs, it may increase the risk for liver disease, heart
failure, and diabetes. Recently, siderophores, which are iron-chelating agents produced by microorganisms,
have attracted tremendous attention because of their strong binding and high selectivity to the ferric form of
iron. Thus, the use of siderophore in sequestering excess iron in the body as a form of therapy is very attractive.
This study determined the effects of commercially available siderophore in sequestering excess iron in organs
such as liver, heart, and pancreas under excess iron conditions.
Methodology:
First, iron-overload was induced by injecting iron dextran (20 mg) into male ICR mice for three
consecutive days. The effects of iron to the liver, heart, and pancreas and the possible sequestration by
siderophore were determined by scoring histological sections. The liver iron concentration was also assessed
by atomic absorption spectroscopy (AAS).
Results and Conclusion
The study showed that iron-overloaded mice exhibited skin hyperpigmentation and
hemosiderosis in liver, heart, and pancreas. Significant changes in the liver include hepatomegaly and
development of tumor. Iron-overloaded mice had 2,935% increase in liver iron content compared to the salinetreated mice. However, when iron-overloaded mice were treated with either 100 µg or 200 µg siderophore,
there was a 77% and 84% decrease in liver iron content, respectively. Moreover, the treatment of ironoverloaded mice with siderophore prevented the development of hemosiderosis, tumor, and structural
changes in the tissues studied. The results showed that siderophore can effectively reduce excess iron and
organ damage in iron-overloaded mice and can be potentially employed in chelation therapy of iron-overload
diseases. Further studies on the possible mechanisms of siderophore aside from decreasing iron excess and
lowering organ dysfunction are recommended.
Siderophores
;
Iron Overload
;
Iron Chelating Agents
;
Hemosiderosis
;
Hepatomegaly
8.The toxicological mechanisms and detoxification of depleted uranium exposure.
Yong-Chao YUE ; Ming-Hua LI ; Hai-Bo WANG ; Bang-Le ZHANG ; Wei HE
Environmental Health and Preventive Medicine 2018;23(1):18-18
Depleted uranium (DU) has been widely applied in industrial and military activities, and is often obtained from producing fuel for nuclear reactors. DU may be released into the environment, polluting air, soil, and water, and is considered to exert both radiological and chemical toxicity. In humans and animals, DU can induce multiple health effects, such as renal tubular necrosis and bone malignancies. This review summarizes the known information on DU's routes of entry, mechanisms of toxicity, and health effects. In addition, we survey the chelating agents used in ameliorating DU toxicity.
Animals
;
Chelating Agents
;
pharmacology
;
Humans
;
Inactivation, Metabolic
;
Radiation-Protective Agents
;
pharmacology
;
Uranium
;
metabolism
;
toxicity
9.A Systematic Comparative Evaluation of ⁶⁸Ga-Labeled RGD Peptides Conjugated with Different Chelators
Akanksha JAIN ; Sudipta CHAKRABORTY ; H D SARMA ; Ashutosh DASH
Nuclear Medicine and Molecular Imaging 2018;52(2):125-134
PURPOSE: The present paper reports a systematic study on the effect of bifunctional chelators (BFC) namely, NOTA, DOTA, and DTPA, on the radiochemical formulation, in vitro stability, and in vivo biological properties of ⁶⁸Ga-labeled RGD peptide derivatives.METHODS: The three RGD conjugates namely, NOTA-Bn-E-[c(RGDfk)]₂, DOTA-Bn-E-[c(RGDfk)]₂, and DTPA-Bn-E-[c(RGDfk)]₂ were radiolabeled with ⁶⁸Ga and the radiolabeling was optimized with respect to the ligand amount, radiolabeling time, and temperature. Further, the ⁶⁸Ga complexes were assessed for their in vitro and in vivo stabilities. The biodistribution studies of the three radiolabeled conjugates were carried out in C57BL/6 mice bearing melanoma tumor at 30 min and 1 h post-adimistration.RESULTS: NOTA-Bn-E-[c(RGDfk)]₂ could be radiolabeled with ⁶⁸Ga at room temperature while DOTA-Bn-E-[c(RGDfk)]₂ and DTPA-Bn-E-[c(RGDfk)]₂ were radiolabeled at high temperature. ⁶⁸Ga-NOTA-Bn-E-[c(RGDfk)]₂ was found to be the most kinetically rigid in in vitro stability assay. The uptake of the three radiolabeled peptide conjugates in melanoma tumor was comparable at 1 h post-administration (NOTA; DOTA; DTPA (% I.D./g):: 2.78 ± 0.38; 3.08 ± 1.1; 3.36 ± 0.49). However, the tumor/background ratio of ⁶⁸Ga-NOTA-Bn-E-[c(RGDfk)]₂ was the best amongst the three radiotracers. ⁶⁸Ga-complexes of NOTA-Bn-E-[c(RGDfk)]₂ and DOTABn-E-[c(RGDfk)]₂ showed excellent in vivo stability while ⁶⁸Ga-DTPA-Bn-E-[c(RGDfk)]₂ showed significant metabolic degradation.CONCLUSION: These studies show that ⁶⁸Ga-NOTA-Bn-E-[c(RGDfk)]₂ would be the most appropriate ⁶⁸Ga-labeled radiotracer and the most amenable for kit formulation.
Animals
;
Chelating Agents
;
In Vitro Techniques
;
Melanoma
;
Mice
;
Pentetic Acid
;
Peptides
10.ASIC1a contributes to the symptom of pain in a rat model of chronic prostatitis.
Song FAN ; Zong-Yao HAO ; Li ZHANG ; Jun ZHOU ; Yi-Fei ZHANG ; Shen TAI ; Xian-Sheng ZHANG ; Chao-Zhao LIANG
Asian Journal of Andrology 2018;20(3):300-305
This study aims to validate our hypothesis that acid-sensing ion channels (ASICs) may contribute to the symptom of pain in patients with chronic prostatitis (CP). We first established a CP rat model, then isolated the L5-S2 spinal dorsal horn neurons for further studies. ASIC1a was knocked down and its effects on the expression of neurogenic inflammation-related factors in the dorsal horn neurons of rat spinal cord were evaluated. The effect of ASIC1a on the Ca2+ ion concentration in the dorsal horn neurons of rat spinal cord was measured by the intracellular calcium ([Ca2+]i) intensity. The effect of ASIC1a on the p38/mitogen-activated protein kinase (MAPK) signaling pathway was also determined. ASIC1a was significantly upregulated in the CP rat model as compared with control rats. Acid-induced ASIC1a expression increased [Ca2+]i intensity in the dorsal horn neurons of rat spinal cord. ASIC1a also increased the levels of neurogenic inflammation-related factors and p-p38 expression in the acid-treated dorsal horn neurons. Notably, ASIC1a knockdown significantly decreased the expression of pro-inflammatory cytokines. Furthermore, the levels of p-p38 and pro-inflammatory cytokines in acid-treated dorsal horn neurons were significantly decreased in the presence of PcTx-1, BAPTA-AM, or SB203580. Our results showed that ASIC1a may contribute to the symptom of pain in patients with CP, at least partially, by regulating the p38/MAPK signaling pathway.
Acid Sensing Ion Channel Blockers/pharmacology*
;
Acid Sensing Ion Channels/genetics*
;
Animals
;
Calcium/metabolism*
;
Chelating Agents/pharmacology*
;
Chronic Disease
;
Cytokines/metabolism*
;
Disease Models, Animal
;
Egtazic Acid/pharmacology*
;
Gene Knockdown Techniques
;
Imidazoles/pharmacology*
;
Inflammation/metabolism*
;
MAP Kinase Signaling System/genetics*
;
Male
;
Pain/genetics*
;
Peptides/pharmacology*
;
Phosphorylation/drug effects*
;
Posterior Horn Cells/metabolism*
;
Prostatitis/complications*
;
Protein Kinase Inhibitors/pharmacology*
;
Pyridines/pharmacology*
;
Rats
;
Spider Venoms/pharmacology*
;
Up-Regulation
;
p38 Mitogen-Activated Protein Kinases/metabolism*


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