1.Effect of Erxian Decoction-containing serum on H_2O_2-induced proliferation and osteogenic differentiation of MC3T3-E1 cells via BK channels.
Ming-Shi REN ; Yu DING ; Zi-Han LI ; Yu-Meng WU ; Si-Min HUANG ; Lan-Lan LUO ; Yu-Jing ZHANG ; Min SHI ; Xun-Li XIA ; Bo LIU
China Journal of Chinese Materia Medica 2023;48(9):2522-2529
		                        		
		                        			
		                        			This study aimed to investigate the effects of Erxian Decoction(EXD)-containing serum on the proliferation and osteogenic differentiation of MC3T3-E1 cells under oxidative stress through BK channels. The oxidative stress model was induced in MC3T3-E1 cells by H_2O_2, and 3 mmol·L~(-1) tetraethylammonium(TEA) chloride was used to block the BK channels in MC3T3-E1 cells. MC3T3-E1 cells were divided into a control group, a model group, an EXD group, a TEA group, and a TEA+EXD group. After MC3T3-E1 cells were treated with corresponding drugs for 2 days, 700 μmol·L~(-1) H_2O_2 was added for treatment for another 2 hours. CCK-8 assay was used to detect cell proliferation activity. The alkaline phosphatase(ALP) assay kit was used to detect the ALP activity of cells. Western blot and real-time fluorescence-based quantitative PCR(RT-qPCR) were used to detect protein and mRNA expression, respectively. Alizarin red staining was used to detect the mineralization area of osteoblasts. The results showed that compared with the control group, the model group showed significantly blunted cell proliferation activity and ALP activity, reduced expression of BK channel α subunit(BKα), collagen Ⅰ(COL1), bone morphogenetic protein 2(BMP2), osteoprotegerin(OPG), and phosphorylated Akt, decreased mRNA expression levels of Runt-related transcription factor 2(RUNX2), BMP2, and OPG, and declining area of calcium nodules. EXD-containing serum could significantly potentiate the cell proliferation activity and ALP activity, up-regulate the protein expression of BKα, COL1, BMP2, OPG, and phosphorylated Akt, and forkhead box protein O1(FoxO1), promote the mRNA expression of RUNX2, BMP2, and OPG, and enlarge the area of calcium nodules. However, BK channel blockage by TEA reversed the effects of EXD-containing serum in promoting the protein expression of BKα, COL1, BMP2, OPG, and phosphorylated Akt and FoxO1, increasing the mRNA expression of RUNX2, BMP2, and OPG, and enlarging the area of calcium nodules. EXD-containing serum could improve the proliferation activity, osteogenic differentiation, and mineralization ability of MC3T3-E1 cells under oxidative stress, which might be related to the regulation of BK channels and downstream Akt/FoxO1 signaling pathway.
		                        		
		                        		
		                        		
		                        			Osteogenesis
		                        			;
		                        		
		                        			Core Binding Factor Alpha 1 Subunit/pharmacology*
		                        			;
		                        		
		                        			Large-Conductance Calcium-Activated Potassium Channels/pharmacology*
		                        			;
		                        		
		                        			Proto-Oncogene Proteins c-akt/metabolism*
		                        			;
		                        		
		                        			Calcium/metabolism*
		                        			;
		                        		
		                        			Cell Differentiation
		                        			;
		                        		
		                        			RNA, Messenger/metabolism*
		                        			;
		                        		
		                        			Cell Proliferation
		                        			;
		                        		
		                        			Osteoblasts
		                        			
		                        		
		                        	
2.NKD1 promotes glucose uptake in colon cancer cells by activating YWHAE transcription.
Qian LIU ; Yuyang DAI ; Huayi YU ; Ying SHEN ; Jianzhong DENG ; Wenbin LU ; Jianhua JIN
Journal of Southern Medical University 2023;43(4):585-589
		                        		
		                        			OBJECTIVE:
		                        			Bo investigate the regulatory relationship between NKD1 and YWHAE and the mechanism of NKD1 for promoting tumor cell proliferation.
		                        		
		                        			METHODS:
		                        			HCT116 cells transfected with pcDNA3.0-NKD1 plasmid, SW620 cells transfected with NKD1 siRNA, HCT116 cells with stable NKD1 overexpression (HCT116-NKD1 cells), SW620 cells with nkd1knockout (SW620-nkd1-/- cells), and SW620-nkd1-/- cells transfected with pcDNA3.0-YWHAE plasmid were examined for changes in mRNA and protein expression levels of YWHAE using qRT-PCR and Western blotting. Chromatin immunoprecipitation (ChIP) assay was used to detect the binding of NKD1 to the promoter region of YWHAE gene. The regulatory effect of NKD1 on YWHAE gene promoter activity was analyzed by dual-luciferase reporter gene assay, and the interaction between NKD1 and YWHAE was analyzed with immunofluorescence assay. The regulatory effect of NKD1 on glucose uptake was examined in the tumor cells.
		                        		
		                        			RESULTS:
		                        			In HCT116 cells, overexpression of NKD1 significantly enhanced the expression of YWHAE at both the mRNA and protein levels, while NKD1 knockout decreased its expression in SW620 cells (P < 0.001). ChIP assay showed that NKD1 protein was capable of binding to the YWHAE promoter sequence; dual luciferase reporter gene assay showed that NKD1 overexpression (or knockdown) in the colon cancer cells significantly enhanced (or reduced) the transcriptional activity of YWHAE promoter (P < 0.05). Immunofluorescence assay demonstrated the binding of NKD1 and YWHAE proteins in colon cancer cells. NKD1 knockout significantly reduced glucose uptake in colon cancer cells (P < 0.01), while YWHAE overexpression restored the glucose uptake in NKD1-knockout cells (P < 0.05).
		                        		
		                        			CONCLUSION
		                        			NKD1 protein activates the transcriptional activity of YWHAE gene to promote glucose uptake in colon cancer cells.
		                        		
		                        		
		                        		
		                        			Humans
		                        			;
		                        		
		                        			Colonic Neoplasms
		                        			;
		                        		
		                        			HCT116 Cells
		                        			;
		                        		
		                        			Cell Line, Tumor
		                        			;
		                        		
		                        			Cell Proliferation
		                        			;
		                        		
		                        			Gene Expression Regulation, Neoplastic
		                        			;
		                        		
		                        			RNA, Messenger
		                        			;
		                        		
		                        			Glucose
		                        			;
		                        		
		                        			Calcium-Binding Proteins/metabolism*
		                        			;
		                        		
		                        			Adaptor Proteins, Signal Transducing/metabolism*
		                        			;
		                        		
		                        			14-3-3 Proteins/metabolism*
		                        			
		                        		
		                        	
3.PDCD6 Promotes Hepatocellular Carcinoma Cell Proliferation and Metastasis through the AKT/GSK3β/β-catenin Pathway.
Shi Yuan WEN ; Yan Tong LIU ; Bing Yan WEI ; Jie Qiong MA ; Yan Yan CHEN
Biomedical and Environmental Sciences 2023;36(3):241-252
		                        		
		                        			OBJECTIVE:
		                        			Programmed cell death 6 (PDCD6), a Ca 2+-binding protein, has been reported to be aberrantly expressed in all kinds of tumors. The aim of this study was to explore the role and mechanism of PDCD6 in hepatocellular carcinomas (HCCs).
		                        		
		                        			METHODS:
		                        			The expression levels of PDCD6 in liver cancer patients and HCC cell lines were analyzed using bioinformatics and Western blotting. Cell viability and metastasis were determined by methylthiazol tetrazolium (MTT) and transwell assays, respectively. And Western blotting was used to test related biomarkers and molecular pathway factors in HCC cell lines. LY294002, a PI3K inhibitor inhibiting AKT, was used to suppress the AKT/GSK3β/β-catenin pathway to help evaluate the role of this pathway in the HCC carcinogenesis associated with PDCD6.
		                        		
		                        			RESULTS:
		                        			The analysis of The Cancer Genome Atlas Database suggested that high PDCD6 expression levels were relevant to liver cancer progression. This was consistent with our finding of higher levels of PDCD6 expression in HCC cell lines than in normal hepatocyte cell lines. The results of MTT, transwell migration, and Western blotting assays revealed that overexpression of PDCD6 positively regulated HCC cell proliferation, migration, and invasion. Conversely, the upregulation of PDCD6 expression in the presence of an AKT inhibitor inhibited HCC cell proliferation, migration, and invasion. In addition, PDCD6 promoted HCC cell migration and invasion by epithelial-mesenchymal transition. The mechanistic investigation proved that PDCD6 acted as a tumor promoter in HCC through the AKT/GSK3β/β-catenin pathway, increasing the expression of transcription factors and cellular proliferation and metastasis.
		                        		
		                        			CONCLUSION
		                        			PDCD6 has a tumor stimulative role in HCC mediated by AKT/GSK3β/β-catenin signaling and might be a potential target for HCC progression.
		                        		
		                        		
		                        		
		                        			Humans
		                        			;
		                        		
		                        			Carcinoma, Hepatocellular/pathology*
		                        			;
		                        		
		                        			Liver Neoplasms/pathology*
		                        			;
		                        		
		                        			Proto-Oncogene Proteins c-akt/metabolism*
		                        			;
		                        		
		                        			beta Catenin/metabolism*
		                        			;
		                        		
		                        			Phosphatidylinositol 3-Kinases/metabolism*
		                        			;
		                        		
		                        			Glycogen Synthase Kinase 3 beta/metabolism*
		                        			;
		                        		
		                        			Cell Line
		                        			;
		                        		
		                        			Cell Proliferation
		                        			;
		                        		
		                        			Cell Line, Tumor
		                        			;
		                        		
		                        			Gene Expression Regulation, Neoplastic
		                        			;
		                        		
		                        			Calcium-Binding Proteins/metabolism*
		                        			;
		                        		
		                        			Apoptosis Regulatory Proteins/genetics*
		                        			
		                        		
		                        	
4.High expression of CCBE1 in adjacent tissues of tongue squamous cell carcinoma is correlated with pericancerous lymphatic vessel proliferation and poor 5-year survival outcomes.
Jiang Long ZHONG ; Jie Qi WANG ; Xiu Hua YE ; Song FAN ; You Yuan WANG ; Wei Liang CHEN
Journal of Southern Medical University 2022;42(10):1545-1551
		                        		
		                        			OBJECTIVE:
		                        			To examine the correlation of CCBE1 expression in adjacent tissues of tongue squamous cell carcinoma (TSCC) with pericancerous lymphatic vessel proliferation, cervical lymph node metastasis and survival outcomes of the patients.
		                        		
		                        			METHODS:
		                        			Lymphatic vessel density was quantified in pericancerous tissue sections of 44 cases of cT1-2N0 TSCC using D2-40 as the lymphatic vessel endothelial marker for calibration and counting of the lymphatic vessels. Of these 44 cases, 22 showed a relatively low lymphatic vessel density (group A) and the other 22 had a high lymphatic vessel density (group B), and the expression levels of CCBE1 in the adjacent tissues determined using immunohistochemistry, immunofluorescence assay and Western blotting were compared between the two groups. The expression level of CCBE1 was also measured in another 90 patients with TSCC using immunohistochemistry, and all the patients were followed up for their survival outcomes.
		                        		
		                        			RESULTS:
		                        			Immunohistochemistry and Western blotting showed a significantly lower rate of high CCBE1 expression in group A than in group B (P < 0.05). Immunofluorescence assay showed co-localization of CCBE1 and D2-40 in the adjacent tissues of TSCC. In the 90 TSCC patients with complete follow-up data, a high expression of CCBE1 was found to correlate with lymph node metastasis and a poor 5-year survival outcomes of the patients (P < 0.05).
		                        		
		                        			CONCLUSION
		                        			A high expression of CCBE1 in the adjacent tissues of TSCC is closely related with pericancerous lymphatic vessel proliferation, cervical lymph node metastasis and a poor 5-year survival of the patients, suggesting the value of CCBE1 as a potential prognostic predictor for TSCC.
		                        		
		                        		
		                        		
		                        			Humans
		                        			;
		                        		
		                        			Tongue Neoplasms/pathology*
		                        			;
		                        		
		                        			Carcinoma, Squamous Cell/metabolism*
		                        			;
		                        		
		                        			Lymphatic Metastasis
		                        			;
		                        		
		                        			Prognosis
		                        			;
		                        		
		                        			Lymphatic Vessels/pathology*
		                        			;
		                        		
		                        			Cell Proliferation
		                        			;
		                        		
		                        			Tongue/pathology*
		                        			;
		                        		
		                        			Calcium-Binding Proteins/metabolism*
		                        			;
		                        		
		                        			Tumor Suppressor Proteins/metabolism*
		                        			
		                        		
		                        	
5.Bax inhibitor 1 inhibits vascular calcification in mice by activating optic atrophy 1 expression.
Wei Ren CHEN ; Hui DU ; Geng QIAN ; Yu Jie ZHOU ; Yun Dai CHEN ; Qian MA ; Xue Sha WU ; Yuan SHA
Journal of Southern Medical University 2022;42(3):330-337
		                        		
		                        			OBJECTIVE:
		                        			To investigate the effects of Bax inhibitor 1 (BI- 1) and optic atrophy protein 1 (OPA1) on vascular calcification (VC).
		                        		
		                        			METHODS:
		                        			Mouse models of VC were established in ApoE-deficient (ApoE-/-) diabetic mice by high-fat diet feeding for 12 weeks followed by intraperitoneal injections with Nε-carboxymethyl-lysine for 16 weeks. ApoE-/- mice (control group), ApoE-/- diabetic mice (VC group), ApoE-/- diabetic mice with BI-1 overexpression (VC + BI-1TG group), and ApoE-/- diabetic mice with BI-1 overexpression and OPA1 knockout (VC+BI-1TG+OPA1-/- group) were obtained for examination of the degree of aortic calcification using von Kossa staining. The changes in calcium content in the aorta were analyzed using ELISA. The expressions of Runt-related transcription factor 2 (RUNX2) and bone morphogenetic protein 2 (BMP-2) were detected using immunohistochemistry, and the expression of cleaved caspase-3 was determined using Western blotting. Cultured mouse aortic smooth muscle cells were treated with 10 mmol/L β-glycerophosphate for 14 days to induce calcification, and the changes in BI-1 and OPA1 protein expressions were examined using Western blotting and cell apoptosis was detected using TUNEL staining.
		                        		
		                        			RESULTS:
		                        			ApoE-/- mice with VC showed significantly decreased expressions of BI-1 and OPA1 proteins in the aorta (P=0.0044) with obviously increased calcium deposition and expressions of RUNX2, BMP-2 and cleaved caspase-3 (P= 0.0041). Overexpression of BI-1 significantly promoted OPA1 protein expression and reduced calcium deposition and expressions of RUNX2, BMP-2 and cleaved caspase-3 (P=0.0006). OPA1 knockdown significantly increased calcium deposition and expressions of RUNX2, BMP-2 and cleaved caspase-3 in the aorta (P=0.0007).
		                        		
		                        			CONCLUSION
		                        			BI-1 inhibits VC possibly by promoting the expression of OPA1, reducing calcium deposition and inhibiting osteogenic differentiation and apoptosis of the vascular smooth muscle cells.
		                        		
		                        		
		                        		
		                        			Animals
		                        			;
		                        		
		                        			Apolipoproteins E/metabolism*
		                        			;
		                        		
		                        			Calcium/metabolism*
		                        			;
		                        		
		                        			Caspase 3/metabolism*
		                        			;
		                        		
		                        			Cells, Cultured
		                        			;
		                        		
		                        			Core Binding Factor Alpha 1 Subunit/metabolism*
		                        			;
		                        		
		                        			Diabetes Mellitus, Experimental/pathology*
		                        			;
		                        		
		                        			GTP Phosphohydrolases/metabolism*
		                        			;
		                        		
		                        			Membrane Proteins/metabolism*
		                        			;
		                        		
		                        			Mice
		                        			;
		                        		
		                        			Mice, Knockout
		                        			;
		                        		
		                        			Muscle, Smooth, Vascular/pathology*
		                        			;
		                        		
		                        			Myocytes, Smooth Muscle/pathology*
		                        			;
		                        		
		                        			Optic Atrophy, Autosomal Dominant/pathology*
		                        			;
		                        		
		                        			Osteogenesis
		                        			;
		                        		
		                        			Vascular Calcification/pathology*
		                        			;
		                        		
		                        			bcl-2-Associated X Protein/metabolism*
		                        			
		                        		
		                        	
6.Construction of a Stable Expression Cell Line of Human Phospholamban.
Lan-Qing CHEN ; Yu-Ning WANG ; Dian-Yi LI ; Lu-Yao XU ; Lian-Jie LI ; Ze-Hao LI ; Hua LIU ; Qian LIU
Journal of Forensic Medicine 2021;37(5):615-620
		                        		
		                        			OBJECTIVES:
		                        			To construct a cell line that can stably express human phospholamban(PLN) and initially explore its application in the study of myocardial toxicity mechanism.
		                        		
		                        			METHODS:
		                        			FastCloning method was used to insert the open reading frame sequence of target gene PLN into eukaryotic expression vector pcDNA5/FRT/TO(hereinafter referred to as pDFT) to construct the pDFT-PLN-Flag plasmid. The Flp-InTM T-RExTM 293 cells were generated by cotransfection of the constructed plasmid and pOG44 plasmid to express the target gene. Successfully recombined monoclonal cell lines were screened by hygromycin B resistance. Western blot and indirect immunofluorescence (IFA) were used to examine the expression of the target protein in recombinant cells. After the cell line was exposed to aconitine, it was verified by Western blot to detect changes in PLN protein phosphorylation.
		                        		
		                        			RESULTS:
		                        			After PCR amplification of the recombinant plasmid and DNA electrophoresis, the length of the amplified product is the same as the known PLN gene fragment, which is consistent with the open reading frame (ORF) sequence of the human PLN gene after sequencing. IFA and Western blot showed that the constructed proliferation cell line can stably express high levels of human PLN under induction and regulation. Preliminary results showed that the phosphorylation level of Thr17-PLN decreased after two hours of exposure to 1 μmol/L aconitine.
		                        		
		                        			CONCLUSIONS
		                        			This human cell line can stably express PLN and can be used to study the mechanism of action of aconitine on the cell at molecular level.
		                        		
		                        		
		                        		
		                        			Calcium-Binding Proteins/metabolism*
		                        			;
		                        		
		                        			Cell Line
		                        			;
		                        		
		                        			Humans
		                        			;
		                        		
		                        			Myocardium/metabolism*
		                        			;
		                        		
		                        			Phosphorylation
		                        			
		                        		
		                        	
7.Effects of rosuvastatin in homocysteine induced mouse vascular smooth muscle cell dedifferentiation and endoplasmic reticulum stress and its mechanisms.
Chang-Zuan ZHOU ; Sun-Lei PAN ; Hui LIN ; Li-Ping MENG ; Zheng JI ; Ju-Fang CHI ; Hang-Yuan GUO
Chinese Journal of Applied Physiology 2018;34(1):43-48
		                        		
		                        			OBJECTIVE:
		                        			To investigate the effect of rosuvastatin on homocysteine (Hcy) induced mousevascular smooth muscle cells(VSMCs) dedifferentiation and endoplasmic reticulum stress(ERS).
		                        		
		                        			METHODS:
		                        			VSMCs were co-cultured with Hcy and different concentration of rosuvastatin (0.1, 1.0 and 10 μmol/L). Cytoskeleton remodeling, VSMCs phenotype markers (smooth muscle actin-α, calponin and osteopontin) and ERS marker mRNAs (Herpud1, XBP1s and GRP78) were detected at predicted time. Tunicamycin was used to induce, respectively 4-phenylbutyrate(4-PBA) inhibition, ERS in VSMCs and cellular migration, proliferation and expression of phenotype proteins were analyzed. Mammalian target of rapamycin(mTOR)-P70S6 kinase (P70S6K) signaling agonist phosphatidic acid and inhibitor rapamycin were used in Rsv treated VSMCs. And then mTOR signaling and ERS associated mRNAs were detected.
		                        		
		                        			RESULTS:
		                        			Compared with Hcy group, Hcy+ Rsv group (1.0 and 10 μmol/L) showed enhanced α-SMA and calponin expression (<0.01), suppressed ERS mRNA levels (<0.01) and promoted polarity of cytoskeleton. Compared with Hcy group, Hcy+Rsv group and Hcy+4-PBA group showed suppressed proliferation, migration and enhanced contractile protein expression (<0.01); while tunicamycin could reverse the effect of Rsv on Hcy treated cells. Furthermore, alleviated mTOR-P70S6K phosphorylation and ERS (<0.01)were observed in Hcy+Rsv group and Hcy+rapamycin group, compared with Hcy group; while phosphatidic acid inhibited the effect of Rsv on mTOR signaling activation and ERS mRNA levels (<0.01).
		                        		
		                        			CONCLUSIONS
		                        			Rosuvastatin could inhibit Hcy induced VSMCs dedifferentiation suppressing ERS, which might be regulated by mTOR-P70S6K signaling.
		                        		
		                        		
		                        		
		                        			Actins
		                        			;
		                        		
		                        			metabolism
		                        			;
		                        		
		                        			Animals
		                        			;
		                        		
		                        			Calcium-Binding Proteins
		                        			;
		                        		
		                        			metabolism
		                        			;
		                        		
		                        			Cell Dedifferentiation
		                        			;
		                        		
		                        			drug effects
		                        			;
		                        		
		                        			Cells, Cultured
		                        			;
		                        		
		                        			Endoplasmic Reticulum Stress
		                        			;
		                        		
		                        			drug effects
		                        			;
		                        		
		                        			Heat-Shock Proteins
		                        			;
		                        		
		                        			metabolism
		                        			;
		                        		
		                        			Homocysteine
		                        			;
		                        		
		                        			Membrane Proteins
		                        			;
		                        		
		                        			metabolism
		                        			;
		                        		
		                        			Mice
		                        			;
		                        		
		                        			Microfilament Proteins
		                        			;
		                        		
		                        			metabolism
		                        			;
		                        		
		                        			Muscle, Smooth, Vascular
		                        			;
		                        		
		                        			cytology
		                        			;
		                        		
		                        			Myocytes, Smooth Muscle
		                        			;
		                        		
		                        			cytology
		                        			;
		                        		
		                        			drug effects
		                        			;
		                        		
		                        			Ribosomal Protein S6 Kinases, 70-kDa
		                        			;
		                        		
		                        			metabolism
		                        			;
		                        		
		                        			Rosuvastatin Calcium
		                        			;
		                        		
		                        			pharmacology
		                        			;
		                        		
		                        			TOR Serine-Threonine Kinases
		                        			;
		                        		
		                        			metabolism
		                        			;
		                        		
		                        			X-Box Binding Protein 1
		                        			;
		                        		
		                        			metabolism
		                        			
		                        		
		                        	
8.Cortical Inflammation is Increased in a DSS-Induced Colitis Mouse Model.
Ying HAN ; Tong ZHAO ; Xiang CHENG ; Ming ZHAO ; Sheng-Hui GONG ; Yong-Qi ZHAO ; Hai-Tao WU ; Ming FAN ; Ling-Ling ZHU
Neuroscience Bulletin 2018;34(6):1058-1066
		                        		
		                        			
		                        			While inflammatory bowel disease (IBD) might be a risk factor in the development of brain dysfunctions, the underlying mechanisms are largely unknown. Here, mice were treated with 5% dextran sodium sulfate (DSS) in drinking water and sacrificed on day 7. The serum level of IL-6 increased, accompanied by elevation of the IL-6 and TNF-α levels in cortical tissue. However, the endotoxin concentration in plasma and brain of mice with DSS-induced colitis showed a rising trend, but with no significant difference. We also found significant activation of microglial cells and reduction in occludin and claudin-5 expression in the brain tissue after DSS-induced colitis. These results suggested that DSS-induced colitis increases systemic inflammation which then results in cortical inflammation via up-regulation of serum cytokines. Here, we provide new information on the impact of colitis on the outcomes of cortical inflammation.
		                        		
		                        		
		                        		
		                        			Animals
		                        			;
		                        		
		                        			Calcium-Binding Proteins
		                        			;
		                        		
		                        			metabolism
		                        			;
		                        		
		                        			Caspase 3
		                        			;
		                        		
		                        			metabolism
		                        			;
		                        		
		                        			Cerebral Cortex
		                        			;
		                        		
		                        			pathology
		                        			;
		                        		
		                        			Claudin-5
		                        			;
		                        		
		                        			metabolism
		                        			;
		                        		
		                        			Colitis
		                        			;
		                        		
		                        			chemically induced
		                        			;
		                        		
		                        			complications
		                        			;
		                        		
		                        			pathology
		                        			;
		                        		
		                        			Cytokines
		                        			;
		                        		
		                        			genetics
		                        			;
		                        		
		                        			metabolism
		                        			;
		                        		
		                        			Dextran Sulfate
		                        			;
		                        		
		                        			toxicity
		                        			;
		                        		
		                        			Disease Models, Animal
		                        			;
		                        		
		                        			Encephalitis
		                        			;
		                        		
		                        			etiology
		                        			;
		                        		
		                        			Gene Expression Regulation
		                        			;
		                        		
		                        			drug effects
		                        			;
		                        		
		                        			Mice
		                        			;
		                        		
		                        			Microfilament Proteins
		                        			;
		                        		
		                        			metabolism
		                        			;
		                        		
		                        			Occludin
		                        			;
		                        		
		                        			metabolism
		                        			;
		                        		
		                        			Polysaccharides
		                        			;
		                        		
		                        			blood
		                        			;
		                        		
		                        			toxicity
		                        			;
		                        		
		                        			Time Factors
		                        			
		                        		
		                        	
9.Early Activation of Astrocytes does not Affect Amyloid Plaque Load in an Animal Model of Alzheimer's Disease.
Dongpi WANG ; Xiaoqin ZHANG ; Mingkai WANG ; Dongming ZHOU ; Hongyu PAN ; Qiang SHU ; Binggui SUN
Neuroscience Bulletin 2018;34(6):912-920
		                        		
		                        			
		                        			Astrocytes are closely associated with Alzheimer's disease (AD). However, their precise roles in AD pathogenesis remain controversial. One of the reasons behind the different results reported by different groups might be that astrocytes were targeted at different stages of disease progression. In this study, by crossing hAPP (human amyloid precursor protein)-J20 mice with a line of GFAP-TK mice, we found that astrocytes were activated specifically at an early stage of AD before the occurrence of amyloid plaques, while microglia were not affected by this crossing. Activation of astrocytes at the age of 3-5 months did not affect the proteolytic processing of hAPP and amyloid plaque loads in the brains of hAPP-J20 mice. Our data suggest that early activation of astrocytes does not affect the deposition of amyloid β in an animal model of AD.
		                        		
		                        		
		                        		
		                        			Aldehyde Dehydrogenase
		                        			;
		                        		
		                        			metabolism
		                        			;
		                        		
		                        			Alzheimer Disease
		                        			;
		                        		
		                        			genetics
		                        			;
		                        		
		                        			metabolism
		                        			;
		                        		
		                        			pathology
		                        			;
		                        		
		                        			Amyloid beta-Peptides
		                        			;
		                        		
		                        			metabolism
		                        			;
		                        		
		                        			Amyloid beta-Protein Precursor
		                        			;
		                        		
		                        			genetics
		                        			;
		                        		
		                        			metabolism
		                        			;
		                        		
		                        			Animals
		                        			;
		                        		
		                        			Astrocytes
		                        			;
		                        		
		                        			metabolism
		                        			;
		                        		
		                        			Brain
		                        			;
		                        		
		                        			pathology
		                        			;
		                        		
		                        			Calcium-Binding Proteins
		                        			;
		                        		
		                        			metabolism
		                        			;
		                        		
		                        			Cell Proliferation
		                        			;
		                        		
		                        			Disease Models, Animal
		                        			;
		                        		
		                        			Gene Expression Regulation
		                        			;
		                        		
		                        			genetics
		                        			;
		                        		
		                        			Glial Fibrillary Acidic Protein
		                        			;
		                        		
		                        			Glutamine
		                        			;
		                        		
		                        			metabolism
		                        			;
		                        		
		                        			Green Fluorescent Proteins
		                        			;
		                        		
		                        			genetics
		                        			;
		                        		
		                        			metabolism
		                        			;
		                        		
		                        			Humans
		                        			;
		                        		
		                        			Ki-67 Antigen
		                        			;
		                        		
		                        			metabolism
		                        			;
		                        		
		                        			Mice
		                        			;
		                        		
		                        			Mice, Transgenic
		                        			;
		                        		
		                        			Microfilament Proteins
		                        			;
		                        		
		                        			metabolism
		                        			;
		                        		
		                        			Mutation
		                        			;
		                        		
		                        			genetics
		                        			;
		                        		
		                        			Nerve Tissue Proteins
		                        			;
		                        		
		                        			metabolism
		                        			
		                        		
		                        	
10.Prediction of Metal Ion Binding Sites in Proteins from Amino Acid Sequences by Using Simplified Amino Acid Alphabets and Random Forest Model.
Genomics & Informatics 2017;15(4):162-169
		                        		
		                        			
		                        			Metal binding proteins or metallo-proteins are important for the stability of the protein and also serve as co-factors in various functions like controlling metabolism, regulating signal transport, and metal homeostasis. In structural genomics, prediction of metal binding proteins help in the selection of suitable growth medium for overexpression’s studies and also help in obtaining the functional protein. Computational prediction using machine learning approach has been widely used in various fields of bioinformatics based on the fact all the information contains in amino acid sequence. In this study, random forest machine learning prediction systems were deployed with simplified amino acid for prediction of individual major metal ion binding sites like copper, calcium, cobalt, iron, magnesium, manganese, nickel, and zinc.
		                        		
		                        		
		                        		
		                        			Amino Acid Sequence*
		                        			;
		                        		
		                        			Binding Sites*
		                        			;
		                        		
		                        			Calcium
		                        			;
		                        		
		                        			Carrier Proteins
		                        			;
		                        		
		                        			Cobalt
		                        			;
		                        		
		                        			Computational Biology
		                        			;
		                        		
		                        			Copper
		                        			;
		                        		
		                        			Forests*
		                        			;
		                        		
		                        			Genomics
		                        			;
		                        		
		                        			Homeostasis
		                        			;
		                        		
		                        			Iron
		                        			;
		                        		
		                        			Machine Learning
		                        			;
		                        		
		                        			Magnesium
		                        			;
		                        		
		                        			Manganese
		                        			;
		                        		
		                        			Metabolism
		                        			;
		                        		
		                        			Nickel
		                        			;
		                        		
		                        			Zinc
		                        			
		                        		
		                        	
            
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