1.Prediction analysis of quality markers and resource evaluation of Artemisiae Argyi Folium based on chemical composition and network pharmacology.
Chang-Jie CHEN ; Hong-Zhi DU ; Yu-Huan MIAO ; Yan FANG ; Ting-Ting ZHAO ; Da-Hui LIU
China Journal of Chinese Materia Medica 2023;48(20):5474-5486
This study is based on ultra-high-performance liquid chromatography(UPLC), gas chromatography-mass spectrometry(GC-MS), and network pharmacology methods to analyze and predict potential quality markers(Q-markers) of Artemisiae Argyi Folium. First, UPLC and GC-MS techniques were used to analyze the content of 12 non-volatile components and 8 volatile components in the leaves of 33 Artemisia argyi germplasm resources as candidate Q-markers. Subsequently, network pharmacology was employed to construct a "component-target-pathway-efficacy" network to screen out core Q-markers, and the biological activity of the markers was validated using molecular docking. Finally, cluster analysis and principal component analysis were performed on the content of Q-markers in the 33 A. argyi germplasm resources. The results showed that 18 candidate components, 60 targets, and 185 relationships were identified, which were associated with 72 pathways related to the treatment of 11 diseases and exhibited 5 other effects. Based on the combination of freedom and component specificity, six components, including eupatilin, cineole, β-caryophyllene, dinatin, jaceosidin, and caryophyllene oxide were selected as potential Q-markers for Artemisiae Argyi Folium. According to the content of these six markers, cluster analysis divided the 33 A. argyi germplasm resources into three groups, and principal component analysis identified S14 as having the highest overall quality. This study provides a reference for exploring Q-markers of Artemisiae Argyi Folium, establishing a quality evaluation system, further studying its pharmacological mechanisms, and breeding new varieties.
Molecular Docking Simulation
;
Network Pharmacology
;
Plant Breeding
;
Chromatography, High Pressure Liquid/methods*
;
Gas Chromatography-Mass Spectrometry
;
Artemisia/chemistry*
;
Drugs, Chinese Herbal/chemistry*
2.Germplasm resource evaluation of Chrysanthemi Indici Flos based on color and chemical components.
Jian-Ling LI ; Zheng-Zhou HAN ; Lian-Feng CHI ; Min WEI ; Zi YE ; Man-Ting WU ; Hong LIN ; Guang-Hui FAN ; Lei XU ; Wei-Feng WEI
China Journal of Chinese Materia Medica 2022;47(19):5217-5223
This study explored the correlation between color and chemical components of Chrysanthemi Indici Flos(CIF), aiming at providing a reference for its procurement, evaluation, and breeding. Colorimeter and ultra-performance liquid chromatograph(UPLC) were used to determine the color(lightness-shade chromaticity value L~*, red-green chromaticity value a~*, yellow-blue chromati-city value b~*) and chemical components(cynaroside, linarin, luteolin, apigenin, and chlorogenic acid) of 84 CIF germplasms, respectively. Diversity analysis, correlation analysis, regression analysis, and cluster analysis were performed. The results showed that the color and chemical components of CIF were diversified. Chlorogenic acid was in significantly positive correlation with L~* and b~* and significantly negative correlation with a~*. Cynaroside and grey relational grade γ_i of chemical components were in significantly po-sitive correlation with b~* and L~*, respectively, whereas linarin, luteolin, and apigenin had no significant correlation with L~*, a~*, or b~*. The 84 CIF germplasms were clustered into 4 clades. In addition, germplasms in clade Ⅲ had higher γ_i and total color value(E~*_(ab)) than those in other clades, with the best quality and color, and a germplasm with the highest quality, bright yellow color, and highest content of linarin was screened out in this clade. Thus, CIF with bright yellow color had high content of cymaroside and chlorogenic acid and thereby high quality. In summary, the color can be used to quickly predict the quality of CIF. Our results provided data for the evaluation of CIF quality by color and a reference for its procurement and breeding.
Chrysanthemum/chemistry*
;
Luteolin/analysis*
;
Chlorogenic Acid/analysis*
;
Apigenin/analysis*
;
Plant Breeding
;
Excipients
;
Chromatography, High Pressure Liquid/methods*
3.CRISPR/Cas: a Nobel Prize award-winning precise genome editing technology for gene therapy and crop improvement.
Chao LI ; Eleanor BRANT ; Hikmet BUDAK ; Baohong ZHANG
Journal of Zhejiang University. Science. B 2021;22(4):253-284
Since it was first recognized in bacteria and archaea as a mechanism for innate viral immunity in the early 2010s, clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated protein (Cas) has rapidly been developed into a robust, multifunctional genome editing tool with many uses. Following the discovery of the initial CRISPR/Cas-based system, the technology has been advanced to facilitate a multitude of different functions. These include development as a base editor, prime editor, epigenetic editor, and CRISPR interference (CRISPRi) and CRISPR activator (CRISPRa) gene regulators. It can also be used for chromatin and RNA targeting and imaging. Its applications have proved revolutionary across numerous biological fields, especially in biomedical and agricultural improvement. As a diagnostic tool, CRISPR has been developed to aid the detection and screening of both human and plant diseases, and has even been applied during the current coronavirus disease 2019 (COVID-19) pandemic. CRISPR/Cas is also being trialed as a new form of gene therapy for treating various human diseases, including cancers, and has aided drug development. In terms of agricultural breeding, precise targeting of biological pathways via CRISPR/Cas has been key to regulating molecular biosynthesis and allowing modification of proteins, starch, oil, and other functional components for crop improvement. Adding to this, CRISPR/Cas has been shown capable of significantly enhancing both plant tolerance to environmental stresses and overall crop yield via the targeting of various agronomically important gene regulators. Looking to the future, increasing the efficiency and precision of CRISPR/Cas delivery systems and limiting off-target activity are two major challenges for wider application of the technology. This review provides an in-depth overview of current CRISPR development, including the advantages and disadvantages of the technology, recent applications, and future considerations.
CRISPR-Cas Systems
;
Clustered Regularly Interspaced Short Palindromic Repeats
;
Crops, Agricultural/genetics*
;
Gene Editing/methods*
;
Genetic Therapy
;
Humans
;
Nobel Prize
;
Plant Breeding
4.Screening of fluorescent bacteria for growth promotion and biocontrol potential against Pyricularia oryzae on aerobic rice (MARDI Aerob 1)
Ng Lee Chuen ; Nur Atiqah Maznan ; Norhayati Yusuf ; Andrew A. Ngadin
Malaysian Journal of Microbiology 2021;17(1):52-59
Aims:
This study aimed to screen the plant growth-promoting fluorescent bacteria (FLB) which isolated from the healthy
rice rhizophere and to evaluate its biocontrol and growth promotion properties against Pyricularia oryzae on aerobic rice
seedling of MARDI Aerob 1.
Methodology and results:
King’s B agar with glycerol was used as the selective medium to isolate FLB from the
healthy rice rhizosphere soil. All FLB obtained were in vitro screened for antagonistic activities against P. oryzae using
dual culture, volatile substances and hydrogen cyanide productions. The potential FLB isolates were further evaluated
on rice seedling early growth promotion before identified using 16S rRNA gene sequencing. A total of 24 FLB were
isolated from the healthy rice rhizosphere soil in Setiu, Terengganu, Malaysia. Isolates: FLB4, FLB5, FLB7 and FLB10
scored the total of percentage inhibition radial growth (PIRG) values ranged 99.5-105.0%. Further seedling growth
promotion screening revealed that FLB4, FLB7 and FLB10 were significantly improved seedling growth with vigor index
of 378.32%, 461.53% and 335.60% over control (133.31%). 16S rRNA sequencing identified that FLB7 as Bacillus
subtilis and the FLB4 and FLB10 as Pseudomonas putida.
Conclusion, significance and impact of study
The selected FLB isolates (FLB4, FLB7 and FLB10) are potential to be
developed as biological control agents against P. oryzae with growth promoting property on aerobic rice seedling.
Plant Breeding--methods
5.From Basic Research to Molecular Breeding - Chinese Scientists Play A Central Role in Boosting World Rice Production.
Genomics, Proteomics & Bioinformatics 2018;16(6):389-392
On November 18, 2018, the Future Science Prize Awarding Ceremony was held in Beijing. In the area of life science, Professors Jiayang Li, Longping Yuan, and Qifa Zhang shared the prize for their pioneering contributions in producing high-yield, superior-quality rice through systematic study of molecular mechanisms associated with specific rice features and application of novel approaches in rice breeding. The Future Science Prize is also touted as "China's Nobel Prize", fully affirming their achievements in rice basic research and breeding.
Awards and Prizes
;
China
;
DNA Shuffling
;
Genetic Engineering
;
methods
;
Oryza
;
genetics
;
growth & development
;
Plant Breeding
;
methods
;
Research
6.Development of the "Third-Generation" Hybrid Rice in China.
Genomics, Proteomics & Bioinformatics 2018;16(6):393-396
Rice is a major cereal crop for China. The development of the "three-line" hybrid rice system based on cytoplasmic male sterility in the 1970s (first-generation) and the "two-line" hybrid rice system based on photoperiod- and thermo-sensitive genic male-sterile lines (second-generation) in the 1980s has contributed significantly to rice yield increase and food security in China. Here we describe the development and implementation of the "third-generation" hybrid rice breeding system that is based on a transgenic approach to propagate and utilize stable recessive nuclear male sterile lines, and as such, the male sterile line and hybrid rice produced using such a system is non-transgenic. Such a system should overcome the intrinsic problems of the "first-generation" and "second-generation" hybrid rice systems and hold great promise to further boost production of hybrid rice and other crops.
China
;
Oryza
;
genetics
;
growth & development
;
Photoperiod
;
Plant Breeding
;
methods
7.Research progress on musk and artificial propagation technique of forest musk deer.
China Journal of Chinese Materia Medica 2018;43(19):3806-3810
Forest musk deer(Moschus berezovskii) is mainly distribute in Shaanxi and Sichuan provinces of China. The musk is a dry exudates in the mature male sachet with complex chemical composition, abundant modern identification methods, various pharmacological action, extensive clinical application. The population quantity and quality of wild and captive forest musk deer failed to improve because of lacking scientific management, excessive hunting and habitat destruction, etc. Carrying out the captive forest musk deer is an effective way to protect them, fast breeding of forest musk deer is the key to increase the yield of musk. Therefore, we should develop new technologies such as natural estrus and artificial insemination in order to speed up the breeding of musk deer and increase the yield of musk. This article reviews the research progress of new artificial propagation technique and musk, which teases some feasible research basis for optimization of forest musk deer species and the research of musk.
Animals
;
Breeding
;
methods
;
China
;
Deer
;
Fatty Acids, Monounsaturated
;
chemistry
;
Female
;
Insemination, Artificial
;
veterinary
;
Male
8.Development and Molecular Characterization of Novel Polymorphic Genomic DNA SSR Markers in Lentinula edodes.
Suyun MOON ; Hwa Yong LEE ; Donghwan SHIM ; Myungkil KIM ; Kang Hyeon KA ; Rhim RYOO ; Han Gyu KO ; Chang Duck KOO ; Jong Wook CHUNG ; Hojin RYU
Mycobiology 2017;45(2):105-109
Sixteen genomic DNA simple sequence repeat (SSR) markers of Lentinula edodes were developed from 205 SSR motifs present in 46.1-Mb long L. edodes genome sequences. The number of alleles ranged from 3–14 and the major allele frequency was distributed from 0.17–0.96. The values of observed and expected heterozygosity ranged from 0.00–0.76 and 0.07–0.90, respectively. The polymorphic information content value ranged from 0.07–0.89. A dendrogram, based on 16 SSR markers clustered by the paired hierarchical clustering' method, showed that 33 shiitake cultivars could be divided into three major groups and successfully identified. These SSR markers will contribute to the efficient breeding of this species by providing diversity in shiitake varieties. Furthermore, the genomic information covered by the markers can provide a valuable resource for genetic linkage map construction, molecular mapping, and marker-assisted selection in the shiitake mushroom.
Alleles
;
Breeding
;
DNA*
;
Gene Frequency
;
Genetic Linkage
;
Genetic Variation
;
Genome
;
Lentinula*
;
Methods
;
Microsatellite Repeats
;
Shiitake Mushrooms*
9.Reproductive ability of a cloned male detector dog and behavioral traits of its offspring.
Ji Hyun LEE ; Geon A KIM ; Rak Seung KIM ; Jong Su LEE ; Hyun Ju OH ; Min Jung KIM ; Do Kyo HONG ; Byeong Chun LEE
Journal of Veterinary Science 2016;17(3):407-411
In 2007, seven detector dogs were produced by somatic cell nuclear transfer using one nuclear donor dog, then trained and certified as excellent detector dogs, similar to their donor. In 2011, we crossed a cloned male and normal female by natural breeding and produced ten offspring. In this study, we investigated the puppies' temperaments, which we later compared with those of the cloned parent male. The results show that the cloned male had normal reproductive abilities and produced healthy offspring. All puppies completed narcotic detector dog training with a success rate for selection of 60%. Although the litter of cloned males was small in this study, a cloned male dog bred by natural mating produced puppies that later successfully completed the training course for drug detection. In conclusion, cloning an elite dog with superior genetic factors and breeding of the cloned dog was found to be a useful method to efficiently procure detector dogs.
Animals
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Breeding
;
Clone Cells*
;
Cloning, Organism
;
Dogs*
;
Female
;
Humans
;
Male*
;
Methods
;
Parents
;
Temperament
;
Tissue Donors
10.Effect of wound to growth of larva of host to Ophiocordyceps sinensis during artificial breeding.
Fei LIU ; De-li ZHANG ; Wei ZENG ; Li LI ; Qing-ming LUO ; Yong-qin TU ; Shi-jiang CHEN ; Ding-hua YIN
China Journal of Chinese Materia Medica 2015;40(2):210-212
To clear the effect of the wound to the growth of the larva of the host to the Ophiocordyceps sinensis, the wounds of same severity at the same position were made artificially to the larva and which were artificial fed at the same environment and condition. The results indicated that, over the winter, the survival rate of the wounded of the infection larva was lower than that of the healthy larva, but the weight had no significant difference between the wounded and the healthy larva. The survival rate of the wounded of the no infection larva was lower than that of the healthy larva, but except with black skin, the wounded larva with offwhite and dusty red had no influence on the variety of the weight. In summery, wound had no advantage to the survival rate, but had no influence to the weight. The result had provided theoretical basis to the reforming of the system of the artificial culture O. sinensis.
Animals
;
Body Weight
;
Breeding
;
methods
;
Hypocreales
;
growth & development
;
Larva
;
Moths
;
growth & development
;
microbiology


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