1.Visualization method of type Ⅳ pili and its application in the study of pili function.
Chinese Journal of Biotechnology 2023;39(11):4534-4549
As an important protein structure on the surface of bacteria, type Ⅳ pili (TFP) is the sensing and moving organ of bacteria. It plays a variety of roles in bacterial physiology, cell adhesion, host cell invasion, DNA uptake, protein secretion, biofilm formation, cell movement and electron transmission. With the rapid development of research methods, technical equipment and pili visualization tools, increasing number of studies have revealed various functions of pili in cellular activities, which greatly facilitated the microbial single cell research. This review focuses on the pili visualization method and its application in the functional research of TFP, providing ideas for the research and application of TFP in biology, medicine and ecology.
Fimbriae, Bacterial/metabolism*
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Bacterial Proteins/genetics*
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Bacterial Physiological Phenomena
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Bacterial Adhesion/physiology*
2.ToxR Is Required for Biofilm Formation and Motility of Vibrio Parahaemolyticus.
Long CHEN ; Yue QIU ; Hao TANG ; Ling Fei HU ; Wen Hui YANG ; Xiao Jue ZHU ; Xin Xiang HUANG ; Tang WANG ; Yi Quan ZHANG
Biomedical and Environmental Sciences 2018;31(11):848-850
Bacterial Proteins
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genetics
;
metabolism
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Biofilms
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DNA-Binding Proteins
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genetics
;
metabolism
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Flagella
;
genetics
;
metabolism
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Gene Expression Regulation, Bacterial
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Transcription Factors
;
genetics
;
metabolism
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Vibrio parahaemolyticus
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cytology
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genetics
;
growth & development
;
physiology
3.Examine the Correlation between Heat Shock Protein IbpA and Heat Tolerance in Cronobacter sakazakii.
Zhi Jing ZHAO ; Bin WANG ; Jing YUAN ; Hao Yu LIANG ; Si Guo DONG ; Ming ZENG
Biomedical and Environmental Sciences 2017;30(8):606-610
We used a proteomic approach to identify IbpA in Cronobacter sakazakii (C. sakazaki), which is related to heat tolerance in this strain. The abundance of IbpA in C. sakazakii strains strongly increased after heat shock. C. sakazakii CMCC 45402 ibpA deletion mutants were successfully constructed. The C. sakazakii CMCC 45402 ΔibpA and wild-type strains could not be distinguished based on colony morphology on LB agar plates or biochemical assays. The growth of the C. sakazakii CMCC 45402 ΔibpA mutant in heat shock conditions was indistinguishable from that of the isogenic wild-type, but showed greater heat resistance than E. coli O157:H7 strain CMCC 44828. This study suggests that the absence of a single ibpA gene has no obvious effect on the phenotype or heat resistance of the strain C. sakazakii CMCC 45402.
Bacterial Proteins
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genetics
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metabolism
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Cronobacter sakazakii
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genetics
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physiology
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Gene Expression Regulation, Bacterial
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physiology
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Genotype
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Heat-Shock Proteins
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genetics
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metabolism
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Hot Temperature
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Stress, Physiological
4.A Five-year Surveillance of Carbapenemase-producing Klebsiella pneumoniae in a Pediatric Hospital in China Reveals Increased Predominance of NDM-1.
Fang DONG ; Jie LU ; Yan WANG ; Jin SHI ; Jing Hui ZHEN ; Ping CHU ; Yang ZHEN ; Shu Jing HAN ; Yong Li GUO ; Wen Qi SONG ;
Biomedical and Environmental Sciences 2017;30(8):562-569
OBJECTIVETo characterize carbapenem (CPM)-non-susceptible Klebsiella pneumoniae (K. pneumoniae) and carbape-nemase produced by these strains isolated from Beijing Children's Hospital based on a five-year surveillance.
METHODSThe Minimal Inhibition Concentration values for 15 antibiotics were assessed using the Phonix100 compact system. PCR amplification and DNA sequencing were used to detect genes encoding carbapenemases. WHONET 5.6 was finally used for resistance analysis.
RESULTSIn total, 179 strains of CPM-non-susceptible K. pneumoniae were isolated from January, 2010 to December, 2014. The rates of non-susceptible to imipenem and meropenem were 95.0% and 95.6%, respectively. In the 179 strains, 95 (53.1%) strains carried the blaIMP gene, and IMP-4 and IMP-8 were detected in 92 (96.8%) and 3 (3.2%) IMP-producing isolates, respectively. 65 (36.3%) strains carried the blaNDM-1 gene. 6 (3.4%) strains carried the blaKPC gene, and KPC-2 were detected in 6 KPC-producing isolates. In addition, New Delhi-Metallo-1 (NDM-1) producing isolates increased from 7.1% to 63.0% in five years and IMP-4 producing isolates decreased from 75.0% to 28.3%.
CONCLUSIONHigh frequencies of multiple resistances to antibiotics were observed in the CPM-non-susceptible K. pneumoniae strains isolated from Beijing Children's Hospital. The production of IMP-4 and NDM-1 metallo-β-lactamases appears to be an important mechanism for CPM-non- susceptible in K. pneumoniae.
Anti-Bacterial Agents ; pharmacology ; Bacterial Proteins ; genetics ; metabolism ; Child ; China ; epidemiology ; Drug Resistance ; Gene Expression Regulation, Bacterial ; physiology ; Gene Expression Regulation, Enzymologic ; physiology ; Hospitals, Pediatric ; Humans ; Klebsiella Infections ; epidemiology ; microbiology ; Klebsiella pneumoniae ; drug effects ; enzymology ; genetics ; Microbial Sensitivity Tests ; Population Surveillance ; Time Factors ; beta-Lactamases ; genetics ; metabolism
5.Energy-coupling mechanism of the multidrug resistance transporter AcrB: Evidence for membrane potential-driving hypothesis through mutagenic analysis.
Protein & Cell 2017;8(8):623-627
Amino Acid Substitution
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Drug Resistance, Multiple, Bacterial
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physiology
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Escherichia coli
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physiology
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Escherichia coli Proteins
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genetics
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metabolism
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Membrane Potentials
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physiology
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Models, Biological
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Multidrug Resistance-Associated Proteins
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genetics
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metabolism
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Mutation, Missense
6.Structural insights into glutathione-mediated activation of the master regulator PrfA in Listeria monocytogenes.
Yong WANG ; Han FENG ; Yalan ZHU ; Pu GAO
Protein & Cell 2017;8(4):308-312
Bacterial Proteins
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chemistry
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genetics
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metabolism
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DNA, Bacterial
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chemistry
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genetics
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metabolism
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Gene Expression Regulation, Bacterial
;
physiology
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Glutathione
;
metabolism
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Listeria monocytogenes
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chemistry
;
genetics
;
metabolism
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Peptide Termination Factors
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chemistry
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genetics
;
metabolism
7.Activation of NF-κB and AP-1 Mediates Hyperproliferation by Inducing β-Catenin and c-Myc in Helicobacter pylori-Infected Gastric Epithelial Cells.
Eunyoung BYUN ; Bohye PARK ; Joo Weon LIM ; Hyeyoung KIM
Yonsei Medical Journal 2016;57(3):647-651
PURPOSE: In the gastric mucosa of Helicobacter pylori (H. pylori)-infected patients with gastritis or adenocarcinoma, proliferation of gastric epithelial cells is increased. Hyperproliferation is related to induction of oncogenes, such as β-catenin and c-myc. Even though transcription factors NF-κB and AP-1 are activated in H. pylori-infected cells, whether NF-κB or AP-1 regulates the expression of β-catenein or c-myc in H. pylori-infected cells has not been clarified. The present study was undertaken to investigate whether H. pylori-induced activation of NF-κB and AP-1 mediates the expression of oncogenes and hyperproliferation of gastric epithelial cells. MATERIALS AND METHODS: Gastric epithelial AGS cells were transiently transfected with mutant genes for IκBα (MAD3) and c-Jun (TAM67) or treated with a specific NF-κB inhibitor caffeic acid phenethyl ester (CAPE) or a selective AP-1 inhibitor SR-11302 to suppress activation of NF-κB or AP-1, respecively. As reference cells, the control vector pcDNA was transfected to the cells. Wild-type cells or transfected cells were cultured with or without H. pylori. RESULTS: H. pylori induced activation of NF-κB and AP-1, cell proliferation, and expression of oncogenes (β-catenein, c-myc) in AGS cells, which was inhibited by transfection of MAD3 and TAM67. Wild-type cells and the cells transfected with pcDNA showed similar activities of NF-κB and AP-1, proliferation, and oncogene expression regardless of treatment with H. pylori. Both CAPE and SR-11302 inhibited cell proliferation and expression of oncogenes in H. pylori-infected cells. CONCLUSION: H. pylori-induced activation of NF-κB and AP-1 regulates transcription of oncogenes and mediates hyperproliferation in gastric epithelial cells.
Blotting, Western
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Caffeic Acids
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Cell Line, Tumor
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Cell Proliferation
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DNA, Bacterial/analysis/genetics
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DNA-Binding Proteins/*metabolism
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Epithelial Cells/*metabolism
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Gastric Mucosa/*metabolism/pathology
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Gastritis/pathology
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Gene Expression Regulation, Bacterial
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Helicobacter Infections/metabolism/pathology/physiopathology
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Helicobacter pylori/pathogenicity/physiology
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Humans
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NF-kappa B/antagonists & inhibitors/*biosynthesis/metabolism
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Peptide Fragments
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Phenylethyl Alcohol/analogs & derivatives
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Proto-Oncogene Proteins c-jun
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Repressor Proteins
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Transcription Factor AP-1/*biosynthesis
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Transcription Factors/*metabolism
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beta Catenin/*metabolism
8.Effect of ptxA and ptxB genes of phosphotransferase system on growth of Streptococcus mutans.
Xinyu WU ; Xiaodan CHEN ; Wanghong ZHAO ; Jin HOU ; Xuan CHEN
West China Journal of Stomatology 2016;34(3):302-306
OBJECTIVEThis study aims to evaluate the effect of ptxA and ptxB genes, which are important genes in the L-ascorbate phosphotransferase system (PTS) of Streptococcus mutans (S. mutans).
METHODSThe ptxA-, ptxB-, and ptxAB-double deficient mutant as well as ptxAB-complemented strain were constructed. Quantitative real-time polymerase chain reaction analysis was performed to evaluate the expression of the target genes of wild-type S. mutans when L-ascorbate was used as the sole carbohydrate source. The OD₆₀₀ values of the wild type, deficient, and complemented strains were continuously monitored, and their growth curves were constructed to compare growth capacity.
RESULTSPolymerase chain reaction and sequencing analyses suggested that deficient and complemented strains were successfully constructed. The expression levelsof ptxA and ptxB significantly increased (P < 0.01) when L-ascorbate was used as the sole carbohydrate source. The growth capacity of the deficient mutants decreased compared with that of the wild-type strain. However, the wild-type phenotype could be restored in the complemented strain.
CONCLUSIONptxA and ptxB genes are associated with L-ascorbate metabolism of S. mutans. The construction of deficient strains and complemented strain lay a foundation for further mechanism study on L-ascorbate metabolism in S. mutans.
Bacterial Proteins ; genetics ; Genes, Bacterial ; Phosphotransferases ; metabolism ; Real-Time Polymerase Chain Reaction ; Streptococcus mutans ; physiology ; Transcription Factors ; genetics
9.Detection of Yersinia Enterocolitica Bacteriophage PhiYe-F10 Lysis Spectrum and Analysis of the Relationship between Lysis Ability and Virulence Gene of Yersinia Enterocolitica.
Tao ZHA ; Junrong LIANG ; Yuchun XIAO ; Huaiqi JING
Chinese Journal of Virology 2016;32(2):185-189
To determine the lysis spectrum of Yersinia enterocolitica bacteriophage phiYe-F10 and to analyze the relationship between the lysis ability of phiYe-F10 and the virulence gene of Yersinia enterocolitica. To observe the lysis ability of the phage phiYe-F10 to the different Yersinia strains with the double-layer technique. The strains used in this study including 213 of Yersinia enterocolitica and 36 of Yersinia pseudotuberculosis and 1 of Yersinia pestis. The virulence genes of these Yersinia enterocolitica (attachment invasion locus (ail) and enterotoxin (ystA, ystB) and yersinia adhesin A (yadA), virulence factor (virF), specific gene for lipopolysaccharide O-side chain of serotype O : 3 (rfbc) were all detected. Among the 213 Yersinia enterocolitica, 84 strains were O : 3 serotype (78 strains with rfbc gene), 10 were serotype O : 5, 13 were serotype O : 8, 34 were serotype O : 9 and 72 were other serotypes. Of these, 77 were typical pathogenic Yersinia enterocolitica harboring with virulence plasmid (ail+, ystA+, ystB-, yadA+, virF+), and 15 were pathogenic bacterial strains deficiency virulence plasmid (ail+, ystA+, ystB-, yadA-, virF-) and the rest 121 were non pathogenic genotype strains. PhiYe-F10 lysed the 71 serotype O : 3 Yersinia enterocolitica strains which were all carried with rfbc+, including 52 pathogenic Yersinia enterocolitica, 19 nonpathogenic Y. enterocolitica. The phiYe-F10 can not lysed serotype O : 5, O : 9 and other serotype Y. enterocolitica, the lysis rate of serotype O : 3 was as high as 84.5%. The phiYe-F10 can not lysed Yersinia pseudotuberculosis and Yersinia pestis. Yersinia phage phiYe-F10 is highly specific for serotype O : 3 Yersinia enterocolitic at 25 degrees C, which showed a typical narrow lysis spectrum. Phage phiYe-F10 can lysed much more pathogenic Y. enterocolitica than nonpathogenic Y. enterocolitica.
Bacterial Proteins
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genetics
;
metabolism
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Bacteriophages
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genetics
;
isolation & purification
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physiology
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Host Specificity
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Virulence Factors
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genetics
;
metabolism
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Yersinia enterocolitica
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genetics
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metabolism
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virology
10.The role of rpoS, hmp, and ssrAB in Salmonella enterica Gallinarum and evaluation of a triple-deletion mutant as a live vaccine candidate in Lohmann layer chickens.
Youngjae CHO ; Yoon Mee PARK ; Abhijit Kashinath BARATE ; So Yeon PARK ; Hee Jeong PARK ; Mi Rae LEE ; Quang Lam TRUONG ; Jang Won YOON ; Iel Soo BANG ; Tae Wook HAHN
Journal of Veterinary Science 2015;16(2):187-194
Salmonella enterica Gallinarum (SG) causes fowl typhoid (FT), a septicemic disease in avian species. We constructed deletion mutants lacking the stress sigma factor RpoS, the nitric oxide (NO)-detoxifying flavohemoglobin Hmp, and the SsrA/SsrB regulator to confirm the functions of these factors in SG. All gene products were fully functional in wild-type (WT) SG whereas mutants harboring single mutations or a combination of rpoS, hmp, and ssrAB mutations showed hypersusceptibility to H2O2, loss of NO metabolism, and absence of Salmonella pathogenicity island (SPI)-2 expression, respectively. A triple-deletion mutant, SGDelta3 (SGDeltarpoSDeltahmpDeltassrAB), was evaluated for attenuated virulence and protection efficacy in two-week-old Lohmann layer chickens. The SGDelta3 mutant did not cause any mortality after inoculation with either 1 x 10(6) or 1 x 10(8) colony-forming units (CFUs) of bacteria. Significantly lower numbers of salmonellae were recovered from the liver and spleen of chickens inoculated with the SGDelta3 mutant compared to chickens inoculated with WT SG. Vaccination with the SGDelta3 mutant conferred complete protection against challenge with virulent SG on the chickens comparable to the group vaccinated with a conventional vaccine strain, SG9R. Overall, these results indicate that SGDelta3 could be a promising candidate for a live Salmonella vaccine against FT.
Administration, Oral
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Animals
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Bacterial Proteins/*genetics/immunology
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*Chickens
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Female
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Poultry Diseases/*immunology/microbiology
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Salmonella Infections, Animal/*immunology/microbiology
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Salmonella Vaccines/administration & dosage/genetics/*immunology
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Salmonella enterica/immunology/*physiology
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Vaccines, Attenuated/administration & dosage/genetics/immunology
;
Virulence

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