1.Assessment of Long-Term Stability of External Quality Control Materials: Defibrinated Pooled Plasma for Examination of Hepatitis Viral Markers
Hyunhye KANG ; Dong Wook JEKARL ; Seung Hyo YOO ; Ae-Ran CHOI ; Eun-Jee OH
Journal of Laboratory Medicine and Quality Assurance 2024;46(1):66-71
Since 2016, the external quality assessment program of The Korean Association of External Quality Assessment Service for hepatitis serology has employed pooled serum specimens. Ten test items include hepatitis B virus surface antigen (HbsAg), hepatitis B virus surface antibody (anti-HBs), hepatitis B virus core antibody (anti-HBc) total, anti-HBc immunoglobulin M (IgM), hepatitis B virus envelope antigen (HBeAg), hepatitis B virus envelope antibody (anti-HBe), hepatitis C virus antibody (anti-HCV), hepatitis A virus antibody (anti-HAV) total, anti-HAV immunoglobulin G (IgG), and anti-HAV IgM. We aimed to evaluate the long-term stability of pooled serum specimens using fresh frozen plasma stored at different temperatures. In the first trial conducted in 2019, an additional 432 samples were prepared and tested for long-term stability at room temperature for 2 weeks, refrigerated for 1 month, and frozen (-20℃ and -80℃) for 6 months to 1 year. Furthermore, the stability of the samples was evaluated based on the number of repeated refrigeration and freezing cycles. The prepared pooled sera specimens for hepatitis serology were stable for up to 10 days at 2–8℃, 2–3 months at -20℃ and -80℃, and four freeze-thaw cycles, with the quantitative indices of all tests deviating within 10%. The results of this study are expected to contribute to the stable implementation and quality improvement of the hepatitis virus antigen-antibody test reliability survey project.
2.Optimization of Agrobacterium tumefaciens-Mediated Transformation of Xylaria grammica EL000614, an Endolichenic Fungus Producing Grammicin
Min-Hye JEONG ; Jung A KIM ; Seogchan KANG ; Eu Ddeum CHOI ; Youngmin KIM ; Yerim LEE ; Mi Jin JEON ; Nan Hee YU ; Ae Ran PARK ; Jin-Cheol KIM ; Soonok KIM ; Sook-Young PARK
Mycobiology 2021;49(5):491-497
An endolichenic fungus Xylaria grammica EL000614 produces grammicin, a potent nematicidal pyrone derivative that can serve as a new control option for root-knot nematodes. We optimized an Agrobacterium tumefaciens-mediated transformation (ATMT) protocol for X.grammica to support genetic studies. Transformants were successfully generated after co-cultivation of homogenized young mycelia of X.grammica with A. tumefaciens strain AGL-1 carrying a binary vector that contains the bacterial hygromycin B phosphotransferase (hph) gene and the eGFP gene in T-DNA. The resulting transformants were mitotically stable, and PCR analysis showed the integratin of both genes in the genome of transformants.Expression of eGFP was confirmed via fluorescence microscopy. Southern analysis showed that 131 (78.9%) out of 166 transformants contained a single T-DNA insertion. Crucial factors for producing predominantly single T-DNA transformants include 48 h of co-cultivation, pretreatment of A. tumefaciens cells with acetosyringone before co-cultivation, and using freshly prepared mycelia. The established ATMT protocol offers an efficient tool for random insertional mutagenesis and gene transfer in studying the biology and ecology ofX.grammica.
3.Spontaneous Rupture of the Right Gastroepiploic Artery Immediately after Gastroscopy
Do Young JUNG ; Hye-kyung JUNG ; Yun Mi KO ; Ayoung LEE ; Ji Taek HONG ; Chang Mo MOON ; Seong Eun KIM ; Chung Hyun TAE ; Ki Nam SHIM ; Sung Ae JUNG ; Ran KIM ; Sun Young CHOI
The Korean Journal of Helicobacter and Upper Gastrointestinal Research 2021;21(3):235-238
Idiopathic spontaneous intraperitoneal hemorrhage is both rare and potentially fatal. The incidence of gastroepiploic artery rupture, especially a non-aneurysmal rupture, is extremely low. We report the case of an elderly woman who was mistakenly diagnosed with procedure-related bleeding after gastroscopy. A 0.3 cm polyp was identified and removed during the procedure. The patient later developed shock due to which gastroscopy was repeated; however, no unusual findings were observed. Therefore, abdominopelvic computerized tomography was performed and gastroepiploic artery rupture was detected. Transcatheter arterial embolization was immediately performed without laparotomy, without any complications. The bleeding was controlled, and the patient was discharged after embolization. It is important to acknowledge the possibility of spontaneous rupture of the visceral arteries in elderly individuals with hypertension or atherosclerosis, especially in the event of sudden abdominal pain or shock immediately after an endoscopic procedure. This is the first case report of idiopathic spontaneous rupture of the right gastroepiploic artery successfully managed by transcatheter arterial embolization in South Korea.
4.Draft Genome Sequence of Xylaria grammica EL000614, a Strain Producing Grammicin, a Potent Nematicidal Compound
Sook-Young PARK ; Jongbum JEON ; Jung A KIM ; Mi Jin JEON ; Nan Hee YU ; Seulbi KIM ; Ae Ran PARK ; Jin-Cheol KIM ; Yerim LEE ; Youngmin KIM ; Eu Ddeum CHOI ; Min-Hye JEONG ; Yong-Hwan LEE ; Soonok KIM
Mycobiology 2021;49(3):294-296
An endolichenic fungus,Xylaria grammica strain EL000614, showed strong nematicidal effects against plant pathogenic nematode, Meloidogyne incognita by producing grammicin. We report genome assembly of X. grammica EL000614 comprised of 25 scaffolds with a total length of 54.73 Mb, N50 of 4.60 Mb, and 99.8% of BUSCO completeness. GC contents of this genome were 44.02%. Gene families associated with biosynthesis of secondary metabolites or regulatory proteins were identified out of 13,730 gene models predicted.
5.Draft Genome Sequence of Xylaria grammica EL000614, a Strain Producing Grammicin, a Potent Nematicidal Compound
Sook-Young PARK ; Jongbum JEON ; Jung A KIM ; Mi Jin JEON ; Nan Hee YU ; Seulbi KIM ; Ae Ran PARK ; Jin-Cheol KIM ; Yerim LEE ; Youngmin KIM ; Eu Ddeum CHOI ; Min-Hye JEONG ; Yong-Hwan LEE ; Soonok KIM
Mycobiology 2021;49(3):294-296
An endolichenic fungus, Xylaria grammica strain EL000614, showed strong nematicidal effects against plant pathogenic nematode, Meloidogyne incognita by producing grammicin.We report genome assembly of X. grammica EL000614 comprised of 25 scaffolds with a total length of 54.73 Mb, N50 of 4.60 Mb, and 99.8% of BUSCO completeness. GC contents of this genome were 44.02%. Gene families associated with biosynthesis of secondary metabolites or regulatory proteins were identified out of 13,730 gene models predicted.
6.Draft Genome Sequence of Xylaria grammica EL000614, a Strain Producing Grammicin, a Potent Nematicidal Compound
Sook-Young PARK ; Jongbum JEON ; Jung A KIM ; Mi Jin JEON ; Nan Hee YU ; Seulbi KIM ; Ae Ran PARK ; Jin-Cheol KIM ; Yerim LEE ; Youngmin KIM ; Eu Ddeum CHOI ; Min-Hye JEONG ; Yong-Hwan LEE ; Soonok KIM
Mycobiology 2021;49(3):294-296
An endolichenic fungus,Xylaria grammica strain EL000614, showed strong nematicidal effects against plant pathogenic nematode, Meloidogyne incognita by producing grammicin. We report genome assembly of X. grammica EL000614 comprised of 25 scaffolds with a total length of 54.73 Mb, N50 of 4.60 Mb, and 99.8% of BUSCO completeness. GC contents of this genome were 44.02%. Gene families associated with biosynthesis of secondary metabolites or regulatory proteins were identified out of 13,730 gene models predicted.
7.Draft Genome Sequence of Xylaria grammica EL000614, a Strain Producing Grammicin, a Potent Nematicidal Compound
Sook-Young PARK ; Jongbum JEON ; Jung A KIM ; Mi Jin JEON ; Nan Hee YU ; Seulbi KIM ; Ae Ran PARK ; Jin-Cheol KIM ; Yerim LEE ; Youngmin KIM ; Eu Ddeum CHOI ; Min-Hye JEONG ; Yong-Hwan LEE ; Soonok KIM
Mycobiology 2021;49(3):294-296
An endolichenic fungus, Xylaria grammica strain EL000614, showed strong nematicidal effects against plant pathogenic nematode, Meloidogyne incognita by producing grammicin.We report genome assembly of X. grammica EL000614 comprised of 25 scaffolds with a total length of 54.73 Mb, N50 of 4.60 Mb, and 99.8% of BUSCO completeness. GC contents of this genome were 44.02%. Gene families associated with biosynthesis of secondary metabolites or regulatory proteins were identified out of 13,730 gene models predicted.
8.Spontaneous Rupture of the Right Gastroepiploic Artery Immediately after Gastroscopy
Do Young JUNG ; Hye-kyung JUNG ; Yun Mi KO ; Ayoung LEE ; Ji Taek HONG ; Chang Mo MOON ; Seong Eun KIM ; Chung Hyun TAE ; Ki Nam SHIM ; Sung Ae JUNG ; Ran KIM ; Sun Young CHOI
The Korean Journal of Helicobacter and Upper Gastrointestinal Research 2021;21(3):235-238
Idiopathic spontaneous intraperitoneal hemorrhage is both rare and potentially fatal. The incidence of gastroepiploic artery rupture, especially a non-aneurysmal rupture, is extremely low. We report the case of an elderly woman who was mistakenly diagnosed with procedure-related bleeding after gastroscopy. A 0.3 cm polyp was identified and removed during the procedure. The patient later developed shock due to which gastroscopy was repeated; however, no unusual findings were observed. Therefore, abdominopelvic computerized tomography was performed and gastroepiploic artery rupture was detected. Transcatheter arterial embolization was immediately performed without laparotomy, without any complications. The bleeding was controlled, and the patient was discharged after embolization. It is important to acknowledge the possibility of spontaneous rupture of the visceral arteries in elderly individuals with hypertension or atherosclerosis, especially in the event of sudden abdominal pain or shock immediately after an endoscopic procedure. This is the first case report of idiopathic spontaneous rupture of the right gastroepiploic artery successfully managed by transcatheter arterial embolization in South Korea.
9.Evaluation of a Newly Developed Rapid Automated Fluorescent Lateral Flow Immunoassay to Detect IgG and IgM Antibodies to Chikungunya Virus
Hyeyoung LEE ; Ji Hyeong RYU ; Sojeong YUN ; Joo Hee JANG ; Ae-Ran CHOI ; Sung-Yeon CHO ; Chulmin PARK ; Dong-Gun LEE ; Eun-Jee OH
Infection and Chemotherapy 2020;52(4):611-615
The ichroma Chikungunya virus (CHIKV) IgG/IgM (Boditech Med Inc., Chuncheon, Korea) is a newly developed rapid lateral flow immunoassay for detection of anti- CHIKV-IgG/ IgM. This study conducted with thirty-six anti-CHIKV IgG positive sera, 57 anti-CHIKV IgM positive sera and 163 anti-CHIKV IgG/IgM negative sera which were confirmed by commercial enzyme-linked immunosorbent assays (ELISAs) (Inbios CHIKjj Detect™ IgM Capture ELISA, Inbios CHIKjj Detect™ IgG ELISA (InBios International Inc., Seattle, WA, USA), Anti-CHIKV ELISA (IgM), Anti- CHIKV ELISA (IgG) (Euroimmun, Lübeck, Germany)). The ichroma detected all 36 anti-CHIKV IgG and 57 anti-CHIKV IgM positivity (100% sensitivity). For 163 anti-CHIKV IgG/IgM negative sera, the ichroma showed one false positive for IgM (99.4% specificity). The ichroma showed no cross-reactivity and no interference. The ichroma demonstrated good diagnostic performance compared to the current ELISAs.
10.Evaluation of a Newly Developed Rapid Automated Fluorescent Lateral Flow Immunoassay to Detect IgG and IgM Antibodies to Chikungunya Virus
Hyeyoung LEE ; Ji Hyeong RYU ; Sojeong YUN ; Joo Hee JANG ; Ae-Ran CHOI ; Sung-Yeon CHO ; Chulmin PARK ; Dong-Gun LEE ; Eun-Jee OH
Infection and Chemotherapy 2020;52(4):611-615
The ichroma Chikungunya virus (CHIKV) IgG/IgM (Boditech Med Inc., Chuncheon, Korea) is a newly developed rapid lateral flow immunoassay for detection of anti- CHIKV-IgG/ IgM. This study conducted with thirty-six anti-CHIKV IgG positive sera, 57 anti-CHIKV IgM positive sera and 163 anti-CHIKV IgG/IgM negative sera which were confirmed by commercial enzyme-linked immunosorbent assays (ELISAs) (Inbios CHIKjj Detect™ IgM Capture ELISA, Inbios CHIKjj Detect™ IgG ELISA (InBios International Inc., Seattle, WA, USA), Anti-CHIKV ELISA (IgM), Anti- CHIKV ELISA (IgG) (Euroimmun, Lübeck, Germany)). The ichroma detected all 36 anti-CHIKV IgG and 57 anti-CHIKV IgM positivity (100% sensitivity). For 163 anti-CHIKV IgG/IgM negative sera, the ichroma showed one false positive for IgM (99.4% specificity). The ichroma showed no cross-reactivity and no interference. The ichroma demonstrated good diagnostic performance compared to the current ELISAs.

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