1.Sterol transport proteins in yeast: a review.
Yu WANG ; Tao WU ; Xuqian FAN ; Haihua RUAN ; Feiyu FAN ; Xueli ZHANG
Chinese Journal of Biotechnology 2023;39(8):3204-3218
Sterols are a class of cyclopentano-perhydrophenanthrene derivatives widely present in living organisms. Sterols are important components of cell membranes. In addition, they also have important physiological and pharmacological activities. With the development of synthetic biology and metabolic engineering technology, yeast cells are increasingly used for the heterologous synthesis of sterols in recent years. Nevertheless, since sterols are hydrophobic macromolecules, they tend to accumulate in the membrane fraction of yeast cells and consequently trigger cytotoxicity, which hampers the further improvement of sterols yield. Therefore, revealing the mechanism of sterol transport in yeast, especially understanding the working principle of sterol transporters, is vital for designing strategies to relieve the toxicity of sterol accumulation and increasing sterol yield in yeast cell factories. In yeast, sterols are mainly transported through protein-mediated non-vesicular transport mechanisms. This review summarizes five types of sterol transport-related proteins that have been reported in yeast, namely OSBP/ORPs family proteins, LAM family proteins, ABC transport family proteins, CAP superfamily proteins, and NPC-like sterol transport proteins. These transporters play important roles in intracellular sterol gradient distribution and homeostasis maintenance. In addition, we also review the current status of practical applications of sterol transport proteins in yeast cell factories.
Saccharomyces cerevisiae/genetics*
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Sterols
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Phytosterols
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Biological Transport
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ATP-Binding Cassette Transporters/genetics*
3.Correlation between estrogen receptor β and ABCC11 gene single nucleotide polymorphisms and axillary osmidrosis.
Rulong HU ; Yu GUO ; Jianhong LONG
Journal of Central South University(Medical Sciences) 2019;44(3):329-333
To explore the correlation between single nucleotide polymorphisms (SNPs) of hormone receptor gene or other related genes and axillary osmidrosis (AO).
Methods: Whole blood samples of 219 patients with AO and 159 normal people were collected, and their genomic DNA was extracted. SNPs of 49 selected gene loci were detected and analyzed by using matrix-assisted laser analysis and ionization time of flight mass spectrometry and other related technologies.
Results: There were significant differences in SNPs at rs1256061 of estrogen receptor β gene and rs17822931, rs16945916 and rs62058521 in ABCC11 gene between the AO patients and normal people (all P<0.01). 81.1% of patients with AO carried G allele at rs1256061, while only 63.2% of normal people carried G allele; 96.3% of patients with AO carried G allele at rs17822931, while only 4.4% of the normal people carried G allele; 28.6% of the patients with armpit odor carried the G allele of rs16945916, while only 0.6% of the normal people carried G allele; 28.0% of patients with AO carried G allele at rs62058521, while only 0.6% of the normal people carried G allele.
Conclusion: SNPs of rs1256061 at the locus of estrogen receptor gene are correlated with the pathogenesis of AO, while SNPs at multiple loci (rs16945916, rs62058521 and rs17822931) in ABCC11 gene are correlated with the pathogenesis of AO.
ATP-Binding Cassette Transporters
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genetics
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Axilla
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Estrogen Receptor beta
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genetics
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Genotype
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Humans
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Polymorphism, Single Nucleotide
4.Phenotype and genetic analysis of a pedigree affected with progressive familial intrahepatic cholestasis.
Qinghua WU ; Beibei MA ; Saisai YANG ; Shiyue MEI ; Xiyang MA ; Xiangdong KONG ; Huirong SHI
Chinese Journal of Medical Genetics 2019;36(8):789-793
OBJECTIVE:
To explore the genetic etiology for a pedigree affected with progressive familial intrahepatic cholestasis (PFIC).
METHODS:
Target sequence capture and next generation sequencing (NGS) were applied for the proband. PCR and Sanger sequencing were used to verify the suspected mutation in his sister with similar symptoms and his parents.
RESULTS:
The proband and his sister manifested after birth with symptoms including jaundice, pruritus and developmental retardation. NGS has identified compound heterozygous mutations of ABCB11 gene, which encodes bile salt export pump protein (BSEP), namely c.2494C>T (p.Arg832Cys) and c.3223C>T (p.Gln1075*), in the proband, which were inherited from his father and mother respectively. His sister carried the same compound mutations.
CONCLUSION
Based on the phenotype and genetic testing, the patients were diagnosed as PFIC2 caused by mutation of the ABCB11 gene. The c.3223C>T is a novel nonsense mutation which may cause premature termination of translation. Above results have enriched the spectrum of ABCB11 mutations and provided new evidence for the molecular basis of PFIC, which also facilitated genetic counseling for this pedigree.
ATP Binding Cassette Transporter, Subfamily B, Member 11
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genetics
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ATP-Binding Cassette Transporters
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Cholestasis, Intrahepatic
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genetics
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Female
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Genetic Testing
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Humans
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Male
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Mutation
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Pedigree
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Phenotype
5.Two natural molecules preferentially inhibit azole-resistant Candida albicans with MDR1 hyperactivation.
Hong-Zhuo SHI ; Wen-Qiang CHANG ; Ming ZHANG ; Hong-Xiang LOU
Chinese Journal of Natural Medicines (English Ed.) 2019;17(3):209-217
Antifungal drug resistance is a significant clinical problem, and antifungal agents that can evade resistance are urgently needed. In infective niches, resistant organisms often co-existed with sensitive ones, or a subpopulation of antibiotic-susceptible organisms may evolve into resistant ones during antibiotic treatment and eventually dominate the whole population. In this study, we established a co-culture assay in which an azole-resistant Candida albicans strain was mixed with a susceptible strain labeled with green fluorescent protein to mimic in vivo conditions and screen for antifungal drugs. Fluconazole was used as a positive control to verify the validity of this co-culture assay. Five natural molecules exhibited antifungal activity against both susceptible and resistant C. albicans. Two of these compounds, retigeric acid B (RAB) and riccardin D (RD), preferentially inhibited C. albicans strains in which the efflux pump MDR1 was activated. This selectivity was attributed to greater intracellular accumulation of the drugs in the resistant strains. Changes in sterol and lipid compositions were observed in the resistant strains compared to the susceptible strain, and might increase cell permeability to RAB and RD. In addition, RAB and RD interfered with the sterol pathway, further aggregating the decrease in ergosterol in the sterol synthesis pathway in the MDR1-activated strains. Our findings here provide an alternative for combating resistant pathogenic fungi.
ATP-Binding Cassette Transporters
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genetics
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metabolism
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Antifungal Agents
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chemistry
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metabolism
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pharmacology
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Azoles
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pharmacology
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Biosynthetic Pathways
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drug effects
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genetics
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Candida albicans
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chemistry
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drug effects
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metabolism
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Cell Membrane
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chemistry
;
metabolism
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Coculture Techniques
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Drug Resistance, Fungal
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drug effects
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Ergosterol
;
metabolism
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Fungal Proteins
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genetics
;
metabolism
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Lipids
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chemistry
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Molecular Structure
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Permeability
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Phenyl Ethers
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chemistry
;
metabolism
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pharmacology
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Sterols
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chemistry
;
metabolism
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Stilbenes
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chemistry
;
metabolism
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pharmacology
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Triterpenes
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chemistry
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metabolism
;
pharmacology
6.Copy number variants of ABCF1, IL17REL, and FCGR3A are associated with the risk of gout.
Zheng DONG ; Yuan LI ; Jingru ZHOU ; Shuai JIANG ; Yi WANG ; Yulin CHEN ; Dongbao ZHAO ; Chengde YANG ; Qiaoxia QIAN ; Yanyun MA ; Hongjun HE ; Hengdong JI ; Yajun YANG ; Xiaofeng WANG ; Xia XU ; Yafei PANG ; Hejian ZOU ; Li JIN ; Feng ZHANG ; Jiucun WANG
Protein & Cell 2017;8(6):467-470
7.Pulmonary surfactant homeostasis associated genetic abnormalities and lung diseases.
Xiaojing JIANG ; Xiuzhu SUN ; Weihua DU ; Haisheng HAO ; Xueming ZHAO ; Dong WANG ; Huabin ZHU ; Yan LIU
Chinese Journal of Medical Genetics 2016;33(4):564-568
Pulmonary surfactant (PS) is synthesized and secreted by alveolar epithelial type II (AEII) cells, which is a complex compound formed by proteins and lipids. Surfactant participates in a range of physiological processes such as reducing the surface tension, keeping the balance of alveolar fluid, maintaining normal alveolar morphology and conducting host defense. Genetic disorders of the surfactant homeostasis genes may result in lack of surfactant or cytotoxicity, and lead to multiple lung diseases in neonates, children and adults, including neonatal respiratory distress syndrome, interstitial pneumonia, pulmonary alveolar proteinosis, and pulmonary fibrosis. This paper has provided a review for the functions and processes of pulmonary surfactant metabolism, as well as the connection between disorders of surfactant homeostasis genes and lung diseases.
ATP-Binding Cassette Transporters
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genetics
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DNA-Binding Proteins
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genetics
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Homeostasis
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Humans
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Lung Diseases
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genetics
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Pulmonary Surfactant-Associated Protein C
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genetics
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Pulmonary Surfactants
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metabolism
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Transcription Factors
8.Differential Diagnosis of Two Chinese Families with Dyschromatoses by Targeted Gene Sequencing.
Jia-Wei LIU ; null ; Jun SUN ; Sergio VANO-GALVAN ; Feng-Xia LIU ; Xiu-Xiu WEI ; Dong-Lai MA
Chinese Medical Journal 2016;129(1):33-38
BACKGROUNDThe dyschromatoses are a group of disorders characterized by simultaneous hyperpigmented macules together with hypopigmented macules. Dyschromatosis universalis hereditaria (DUH) and dyschromatosis symmetrica hereditaria are two major types. While clinical and histological presentations are similar in these two diseases, genetic diagnosis is critical in the differential diagnosis of these entities.
METHODSThree patients initially diagnosed with DUH were included. The gene test was carried out by targeted gene sequencing. All mutations detected on ADAR1 and ABCB6 genes were analyzed according to the frequency in control database, the mutation types, and the published evidence to determine the pathogenicity.
RESULTSFamily pedigree and clinical presentations were reported in 3 patients from two Chinese families. All patients have prominent cutaneous dyschromatoses involving the whole body without systemic complications. Different pathogenic genes in these patients with similar phenotype were identified: One novel mutation on ADAR1 (c. 1325C>G) and one recurrent mutation in ABCB6 (c. 1270T>C), which successfully distinguished two diseases with the similar phenotype.
CONCLUSIONTargeted gene sequencing is an effective tool for genetic diagnosis in pigmentary skin diseases.
ATP-Binding Cassette Transporters ; genetics ; Adenosine Deaminase ; genetics ; Adolescent ; Asian Continental Ancestry Group ; Child ; Diagnosis, Differential ; Female ; Genetic Predisposition to Disease ; genetics ; Humans ; Male ; Pedigree ; Pigmentation Disorders ; congenital ; diagnosis ; genetics ; RNA-Binding Proteins ; genetics ; Skin Diseases, Genetic ; diagnosis ; genetics
9.Cloning and Iron Transportation of Nucleotide Binding Domain of Cryptosporidium andersoni ATP-Binding Cassette (CaABC) Gene.
Ju Hua WANG ; Xiu Heng XUE ; Jie ZHOU ; Cai Yun FAN ; Qian Qian XIE ; Pan WANG
The Korean Journal of Parasitology 2015;53(3):335-339
Cryptosporidium andersoni ATP-binding cassette (CaABC) is an important membrane protein involved in substrate transport across the membrane. In this research, the nucleotide binding domain (NBD) of CaABC gene was amplified by PCR, and the eukaryotic expression vector of pEGFP-C1-CaNBD was reconstructed. Then, the recombinant plasmid of pEGFP-C1-CaNBD was transformed into the mouse intestinal epithelial cells (IECs) to study the iron transportation function of CaABC. The results indicated that NBD region of CaABC gene can significantly elevate the transport efficiency of Ca2+, Mg2+, K+, and HCO3 - in IECs (P<0.05). The significance of this study is to find the ATPase inhibitors for NBD region of CaABC gene and to inhibit ATP binding and nutrient transport of CaABC transporter. Thus, C. andersoni will be killed by inhibition of nutrient uptake. This will open up a new way for treatment of cryptosporidiosis.
ATP-Binding Cassette Transporters/*chemistry/*genetics/metabolism
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Adenosine Triphosphate/metabolism
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Amino Acid Sequence
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Animals
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Calcium/metabolism
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*Cloning, Molecular
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Cryptosporidiosis/parasitology
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Cryptosporidium/chemistry/genetics/*metabolism
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Humans
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Iron/metabolism
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Mice
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Molecular Sequence Data
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Protein Structure, Tertiary
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Protozoan Proteins/*chemistry/*genetics/metabolism
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Sequence Alignment
10.Site-directed mutagenesis and protein expression of ABCA3 gene in A549 cells.
Juan-Juan WANG ; Yuan LI ; Chun-Yan CHEN ; Pei-Jing HU ; Li-Meng GENG ; Xi-Hui ZHOU
Chinese Journal of Contemporary Pediatrics 2015;17(4):395-399
OBJECTIVETo study the protocol of construction of the mutation E292V and M723I of hABCA3 gene associated with neonatal respiratory distress syndrome, as well as their eukaryotic green fluorescent protein expression rectors, and to examine the expression of mutation proteins in human lung carcinoma epithelial cells (A549).
METHODSSite-directed mutagenesis method based on overlap extension PCR was used to introduce mutations in the two sites which were E292V and M723I in the ABCA3. The PCR fragments were subcloned to PEGFP-C2 vectors to construct the eukaryotic green fluorescent protein expression rectors. A549 cells were transiently transfected with the recombinants using Lipofectamine 2000 and the transfection efficiency was confirmed through GFP signal. The expression and location of recombinants were detected by FV1000 laser scanning microscope.
RESULTSDirect sequence analysis confirmed an A to T transition at position 875 in E292V and a G to A transition at position 2169 in M723I. Recombinants were transfected to A549 cells and both wild type and mutant ABCA3 proteins were expressed in the cytoplasm.
CONCLUSIONSThe eukaryotic green fluorescent protein expression rectors of wild type and mutant ABCA3 gene were constructed and they were successfully expressed in A549 cells. This experiment provides a basis for subsequent research.
ATP-Binding Cassette Transporters ; genetics ; Cell Line, Tumor ; Green Fluorescent Proteins ; genetics ; Humans ; Mutagenesis, Site-Directed ; Transfection

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