1.Risk prediction models of dangerous behaviors among patients with severe mental disorder in community
Xuanyi HU ; Min XIE ; Siyi LIU ; Yulu WU ; Xiangrui WU ; Yuanyuan LIU ; Changjiu HE ; Guangzhi DAI ; Qiang WANG
Sichuan Mental Health 2024;37(1):39-45
		                        		
		                        			
		                        			BackgroundThe occurrence rate of dangerous behaviors in patients with severe mental disorders is higher than that of the general population. In China, there is limited research on the prediction of dangerous behaviors in community-dwelling patients with severe mental disorders, particularly in terms of predicting models using data mining techniques other than traditional methods. ObjectiveTo explore the influencing factors of dangerous behaviors in community-dwelling patients with severe mental disorders and testing whether the classification decision tree model is superior to the Logistic regression model. MethodsA total of 11 484 community-dwelling patients with severe mental disorders who had complete follow-up records from 2013 to 2022 were selected on December 2023. The data were divided into a training set (n=9 186) and a testing set (n=2 298) in an 8∶2 ratio. Logistic regression and classification decision trees were separately used to establish predictive models in the training set. Model discrimination and calibration were evaluated in the testing set. ResultsDuring the follow-up period, 1 115 cases (9.71%) exhibited dangerous behaviors. Logistic regression results showed that urban residence, poverty, guardianship, intellectual disability, history of dangerous behaviors, impaired insight and positive symptoms were risk factors for dangerous behaviors (OR=1.778, 1.459, 2.719, 1.483, 3.890, 1.423, 2.528, 2.124, P<0.01). Being aged ≥60 years, educated, not requiring prescribed medication and having normal social functioning were protective factors for dangerous behaviors (OR=0.594, 0.824, 0.422, 0.719, P<0.05 or 0.01). The predictive effect in the testing set showed an area under curve (AUC) of 0.729 (95% CI: 0.692~0.766), accuracy of 70.97%, sensitivity of 59.71%, and specificity of 72.05%. The classification decision tree results showed that past dangerous situations, positive symptoms, overall social functioning score, economic status, insight, household registration, disability status and age were the influencing factors for dangerous behaviors. The predictive effect in the testing set showed an AUC of 0.721 (95% CI: 0.705~0.737), accuracy of 68.28%, sensitivity of 64.46%, and specificity of 68.60%. ConclusionThe classification decision tree does not have a greater advantage over the logistic regression model in predicting the risk of dangerous behaviors in patients with severe mental disorders in the community. [Funded by Chengdu Medical Research Project (number, 2020052)] 
		                        		
		                        		
		                        		
		                        	
2.Correlation analysis of microorganisms in subgingival plaque in patients with T2DM and periodontitis
Minglu JIANG ; Zhiwei FAN ; Chunxia LIU ; Xiangrui MA ; Wenlong WANG ; Caiyun CUI ; Jing WANG
Journal of Practical Stomatology 2024;40(6):840-848
		                        		
		                        			
		                        			Objective:To study the role of special microbial communities in the development of periodontitis in type 2 diabetes melli-tus(T2DM)patients.Methods:40 subjects aged 20-70 years were included and divided into 3 groups:moderate to severe periodon-titis with T2DM(SP.T2DM,n=15),moderate to severe periodontitis group(SP,n=15)and normal healthy group(N,n=10).The basic information,periodontal clinical indicators and blood sugar of the subjects were recorded.Subgingival plaque samples were col-lected,DNA samples of the plaque were extracted,and sequenced by Illumina NovaSeq6000 platform.The microbial diversity,eco-logical characteristics and functions of the plaque were analyzed by Uparse,SPSS and other softwares.Results:481 species in 22 phyla,30 classes,73 orders,129 families and 265 genera were obtained from the samples.Beta polymorphism analysis showed that the species composition of CP.T2DM group and CP group was similar.Alpha polymorphism analysis showed that the species richness and evenness in CP.T2DM group and CP group were higher than those in N group(P<0.01).Venn diagram analysis showed that the species richness of the plaque in CP.T2DM group was the highest,followed by CP group and the lowest in N group.At the genus lev-el,Klebsiella and Bifidobacterium in CP.T2DM group were larger than those in CP group and N group(P<0.05),and between group CP and N,P>0.05.At the species level,the Capnocytophaga leadbetteri in CP.T2DM group was higher than that in CP group and N group(P<0.05),between group CP and N,P>0.05;There were some differences in the microbial community structure of subgingival plaque among the 3 groups.The species richness of subgingival flora in patients with CP and T2DM was higher than that in patients with CP and healthy people.Conclusion:The increase of Klebsiella,Bifidobacterium and Capnocytophaga leadbetter in subgingival flora of patients with moderate and severe periodontitis may be related to the development of T2DM.
		                        		
		                        		
		                        		
		                        	
3.Mechanism of GLI1 mediated macrophages polarization in hypoxic pulmonary hypertension
Xiangrui ZHU ; Jian MEI ; Zhaosi WANG ; Langlin OU ; Lixin ZHANG ; Xiaoying WANG ; Siyu HE ; Jun'e BAI ; Xiaoyu GUAN ; Hao YUAN ; Cui MA
Chinese Journal of Immunology 2024;40(5):1016-1022
		                        		
		                        			
		                        			Objective:To explore effect of Glioma-associated oncogene family zinc finger 1(GLI1)on hypoxia induced trans-formation of NR8383 to M1 phenotype and development of pulmonary hypertension(PH).Methods:Fifteen adult male Wistar rats were randomly divided into control group,hypoxia PH model group and hypoxic PH with GANT61 treatment group,with 5 rats in each group.PH related indexes of rats were detected by small animal ultrasound and right cardiac catheter experiment to determine effect of GLI1 specific inhibitor GANT61 on progression of PH.Pulmonary arterial thickness was measured by HE staining.α-SMA and M1 polarization markers TNF-α and IL-1β expressions were determined by immunohistochemistry.M1 polarization markers CD86 and TNF-α expressions were determined by immunofluorescence.GLI1 expression and NF-κB protein were detected by Western blot.mRNA expressions of iNOS,CD86,TNF-α,IL-1β and IL-12 were detected by qRT-PCR.CHIP-PCR verified that GLI1 regulates NF-κB promoter activity.IL-12 content was detected by ELISA.Rat pulmonary artery smooth muscle cells proliferation was detected by CCK-8.Results:GLI1 inhibitor GANT61 could alleviate symptoms of PH in hypoxic rats(P<0.05).Compared with hypoxic group,inhibition of GLI1 reduced expressions of TNF-α and IL-1β in rat lung tissue(P<0.05).In cell experiments,hypoxia induced M1 polarization of NR8383 by up-regulating GLI1 to activate NF-κB pathway,GLI1 overexpression increased expressions of iNOS,CD86,TNF-α,IL-1β and IL-12 in M1 macrophages(P<0.05).NR8383 culture supernatants could stimulate pulmonary artery smooth muscle cell proliferation(P<0.05)and contribute to development of PH.Conclusion:Hypoxia activates NF-κB pathway by up-regulating GLI1 to induce M1 polarization of macrophages contributes to development of PH.
		                        		
		                        		
		                        		
		                        	
4.Multiplex gene editing and regulation techniques based on CRISPR/Cas system.
Xiangrui FAN ; Junyan WANG ; Liya LIANG ; Rongming LIU
Chinese Journal of Biotechnology 2023;39(6):2449-2464
		                        		
		                        			
		                        			The CRISPR/Cas systems comprising the clustered regularly interspaced short palindromic repeats (CRISPR) and its associated Cas protein is an acquired immune system unique to archaea or bacteria. Since its development as a gene editing tool, it has rapidly become a popular research direction in the field of synthetic biology due to its advantages of high efficiency, precision, and versatility. This technique has since revolutionized the research of many fields including life sciences, bioengineering technology, food science, and crop breeding. Currently, the single gene editing and regulation techniques based on CRISPR/Cas systems have been increasingly improved, but challenges still exist in the multiplex gene editing and regulation. This review focuses on the development and application of multiplex gene editing and regulation techniques based on the CRISPR/Cas systems, and summarizes the techniques for multiplex gene editing or regulation within a single cell or within a cell population. This includes the multiplex gene editing techniques developed based on the CRISPR/Cas systems with double-strand breaks; or with single-strand breaks; or with multiple gene regulation techniques, etc. These works have enriched the tools for the multiplex gene editing and regulation and contributed to the application of CRISPR/Cas systems in the multiple fields.
		                        		
		                        		
		                        		
		                        			Gene Editing
		                        			;
		                        		
		                        			CRISPR-Cas Systems/genetics*
		                        			;
		                        		
		                        			Bacteria/genetics*
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		                        			Archaea
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		                        			Bioengineering
		                        			
		                        		
		                        	
5.Effect and mechanism of atorvastatin on the proliferation,autophagy and glucose metabolism of AGS cells in human gastric cancer
Xiangrui SUN ; Chenling CUI ; Wei WANG ; Qingfei WANG
China Pharmacy 2023;34(18):2187-2191
		                        		
		                        			
		                        			OBJECTIVE To explore the effects and mechanism of atorvastatin on the proliferation, autophagy and glucose metabolism of AGS cells in human gastric cancer. METHODS The effects of low, medium and high concentrations of atorvastatin (12.5, 25, 50 μmol/L) on the viability of AGS cells were investigated through preliminary experiments, and the concentration of action was screened. The formal experiment was divided into control group (no intervention), atorvastatin group (25 μmol/L), positive control group (50 mg/L 5-fluorouracil), inhibitor group [25 μmol/L atorvastatin +10 μmol/L phosphatidylinositol-3-kinase (PI3K)/protein kinase B (Akt) signaling pathway inhibitor LY294002] and activator group (25 μmol/L atorvastatin +10 μmol/L PI3K/Akt signaling pathway activator SC79), all of which were treated for 24 h. Glucose metabolism (glucose and lactic acid contents) and cell proliferation rate were detected, as well as the expression of autophagy-associated protein light chain 3 (LC3) Ⅰ, LC3Ⅱ and PI3K/Akt signaling pathway-associated proteins in cells. RESULTS Both medium and high concentrations of atorvastatin could significantly inhibit the viability of AGS cells (P<0.05), and 25 μmol/L atorvastatin was selected for the official experiment for follow-up experiments. Compared with the control group, the contents of glucose and lactic acid, cell proliferation rate, p-PI3K/PI3K and p-Akt/Akt ratios in the positive control group and atorvastatin group were significantly decreased (P< 0.05), and the protein expression levels of LC3 Ⅰ and LC3 Ⅱ were significantly increased (P<0.05). Compared with the atorvastatin group, the inhibitor further promoted the changes in the above indexes (P<0.05), and the activator significantly reversed the changes in the above indexes (P<0.05). CONCLUSIONS Atorvastatin could inhibit glucose metabolism and proliferation of AGS cells in human gastric cancer and promote autophagy. The mechanism may be related to the inhibition of the PI3K/Akt signaling pathway.
		                        		
		                        		
		                        		
		                        	
6.Advances in modification and delivery of nucleic acid drugs.
Junfeng WANG ; Manman TAN ; Ying WANG ; Xiangrui LIU ; Aifu LIN
Journal of Zhejiang University. Medical sciences 2023;52(4):417-428
		                        		
		                        			
		                        			Nucleic acid-based drugs, such as RNA and DNA drugs, exert their effects at the genetic level. Currently, widely utilized nucleic acid-based drugs include nucleic acid aptamers, antisense oligonucleotides, mRNA, miRNA, siRNA and saRNA. However, these drugs frequently encounter challenges during clinical application, such as poor stability, weak targeting specificity, and difficulties in traversing physiological barriers. By employing chemical modifications of nucleic acid structures, it is possible to enhance the stability and targeting specificity of certain nucleic acid drugs within the body, thereby improving delivery efficiency and reducing immunogenicity. Moreover, utilizing nucleic acid drug carriers can facilitate the transportation of drugs to lesion sites, thereby aiding efficient intracellular escape and promoting drug efficacy within the body. Currently, commonly employed delivery carriers include virus vectors, lipid nanoparticles, polymer nanoparticles, inorganic nanoparticles, protein carriers and extracellular vesicles. Nevertheless, individual modifications or delivery carriers alone are insufficient to overcome numerous obstacles. The integration of nucleic acid chemical modifications with drug delivery systems holds promise for achieving enhanced therapeutic effects. However, this approach also presents increased technical complexity and clinical translation costs. Therefore, the development of nucleic acid drug carriers and nucleic acid chemical modifications that are both practical and simple, while maintaining high efficacy, low toxicity, and precise nucleic acid delivery, has become a prominent research focus in the field of nucleic acid drug development. This review comprehensively summarizes the advancements in nucleic acid-based drug modifica-tions and delivery systems. Additionally, strategies to enhance nucleic acid drug delivery efficiency are discussed, with the aim of providing valuable insights for the translational application of nucleic acid drugs.
		                        		
		                        		
		                        		
		                        			Nucleic Acids
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		                        			RNA, Small Interfering/genetics*
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		                        			Drug Carriers
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		                        			Drug Delivery Systems
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		                        			Drug Development
		                        			
		                        		
		                        	
7.Exploration of Immune Tolerance and Treatment for Esophageal Cancer
Siyuan XING ; Qingxia FAN ; Zhengzheng SHAN ; Xiangrui MENG ; Feng WANG
Cancer Research on Prevention and Treatment 2023;50(12):1174-1179
		                        		
		                        			
		                        			Monoclonal antibody drugs that inhibit programmed death 1 (PD-1) or programmed death ligand 1 (PD-L1) have been widely used in esophageal cancer (EC) and yielded significant therapeutic responses. However, only a few patients obtain lasting clinical benefits due to primary or acquired drug resistance, and new treatment schemes are urgently needed. The tumor immune microenvironment is the main factor that affects patients' response to immunosuppressive agents. This article will discuss the role of immunosuppressive cells and non-cellular components in the immune process to provide ideas for the next research direction of EC.
		                        		
		                        		
		                        		
		                        	
8.MFN1 ubiquitination mediates lipopolysaccharide-induced mitochondrial dysfunction and pyroptosis in Raw264.7 mouse macrophages
Jian MEI ; Xiangrui ZHU ; Langlin OU ; Zhaosi WANG ; Lixin ZHANG ; Yueshan LYU ; Xiaoying WANG ; Siyu HE ; Jun′e BAI ; Hao YUAN ; Xiaoyu GUAN ; Cui MA
Chinese Journal of Microbiology and Immunology 2022;42(9):705-713
		                        		
		                        			
		                        			Objective:To investigate the regulatory effects of mitofusin 1 (MFN1) on lipopolysaccharide (LPS)-induced Raw264.7 mouse macrophages pyroptosis and to provide reference for further study on the prevention of inflammation and fibrosis caused by macrophage dysfunction.Methods:Raw264.7 mouse macrophages were cultured in vitro and used to construct a model of LPS-induced pyroptosis. CCK-8 staining, PI staining, LDH release assay and Western blot were used to verify the Raw264.7 pyroptosis induced by LPS. MFN1 expression was detected by Western blot. DCFH-DA probe was used to detect the synthesis of total reactive oxygen species (ROS); Mito-SOX was used to detect mitochondrial ROS; JC-1 mitochondrial membrane potential was detected by fluorescence probe to reflect mitochondrial damage. Based on Ubibrowser database, it was predicted that MFN1 could bind to a variety of E3 ubiquitin ligases. Then, immunofluorescence and co-immunoprecipitation (CO-IP) were used to analyze MFN1 ubiquitination. An overexpression plasmid for MFN1 was constructed and transfected into Raw264.7 cells to detect the changes in pyroptosis and mitochondrial function. Results:LPS could induce the pyroptosis of Raw264.7 cells and mitochondrial dysfunction. MFN1 expression was decreased after LPS stimulation. Ubiquitinated MFN1 was detected by CO-IP. Ubiquitination inhibitor MG-132 inhibited LPS-induced expression of pyroptosis-related proteins including NLRP3, Pro-caspase-1, Caspase-1, IL-1β and IL-18 and improved mitochondrial function. MFN1 overexpression relieved the mitochondrial dysfunction and pyroptosis of Raw264.7 cells induced by LPS.Conclusions:The ubiquitination of MFN1 induced by LPS was involved in mitochondrial dysfunction and macrophage pyroptosis, suggesting that MFN1 was a potential target for the treatment of macrophage-induced inflammation and related diseases.
		                        		
		                        		
		                        		
		                        	
9.Prevalence of antifolate drug resistance markers in Plasmodium vivax in China.
Fang HUANG ; Yanwen CUI ; He YAN ; Hui LIU ; Xiangrui GUO ; Guangze WANG ; Shuisen ZHOU ; Zhigui XIA
Frontiers of Medicine 2022;16(1):83-92
		                        		
		                        			
		                        			The dihydrofolate reductase (dhfr) and dihydropteroate synthetase (dhps) genes of Plasmodium vivax, as antifolate resistance-associated genes were used for drug resistance surveillance. A total of 375 P. vivax isolates collected from different geographical locations in China in 2009-2019 were used to sequence Pvdhfr and Pvdhps. The majority of the isolates harbored a mutant type allele for Pvdhfr (94.5%) and Pvdhps (68.2%). The most predominant point mutations were S117T/N (77.7%) in Pvdhfr and A383G (66.8%) in Pvdhps. Amino acid changes were identified at nine residues in Pvdhfr. A quadruple-mutant haplotype at 57, 58, 61, and 117 was the most frequent (57.4%) among 16 distinct Pvdhfr haplotypes. Mutations in Pvdhps were detected at six codons, and the double-mutant A383G/A553G was the most prevalent (39.3%). Pvdhfr exhibited a higher mutation prevalence and greater diversity than Pvdhps in China. Most isolates from Yunnan carried multiple mutant haplotypes, while the majority of samples from temperate regions and Hainan Island harbored the wild type or single mutant type. This study indicated that the antifolate resistance levels of P. vivax parasites were different across China and molecular markers could be used to rapidly monitor drug resistance. Results provided evidence for updating national drug policy and treatment guidelines.
		                        		
		                        		
		                        		
		                        			Antimalarials/pharmacology*
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		                        			China/epidemiology*
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		                        			Drug Combinations
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		                        			Drug Resistance/genetics*
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		                        			Folic Acid Antagonists/pharmacology*
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		                        			Humans
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		                        			Mutation
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		                        			Plasmodium vivax/genetics*
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		                        			Prevalence
		                        			
		                        		
		                        	
10.The role of DDX5 RNA helicases on cancer progression and development
Guoqi LIU ; Yumei HUANG ; Jiaojiao SONG ; Wenlong WANG ; Xiangrui MA ; Chenglong YU ; Jinhua ZUO
Journal of Chinese Physician 2022;24(12):1909-1912
		                        		
		                        			
		                        			DDX5 helicase (DEAD box helicases 5), also known as P68, is an important member of an ATP dependent RNA helicase.Studies have shown that DDX5 is abnormally expressed in a variety of cancers, targeting a variety of tumor related signal pathways, regulating upstream and downstream factors to affect the occurrence, invasion and migration of tumor cells. This article describes the biological role of DDX5 in malignant tumors and provides prospects for targeted treatment of tumors.
		                        		
		                        		
		                        		
		                        	
            
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