1.Clinical application and evaluation of rapid detection of carbapenem resistance genes in blood cultures by Xpert Carba-R
Yuqiao XU ; Wenying XIA ; Kun FAN ; Fang NI ; Ting XU
Chinese Journal of Laboratory Medicine 2024;47(2):165-169
		                        		
		                        			
		                        			This work aims to evaluate a rapid detection method of carbapenem resistance genes in blood cultures based on Xpert Carba-R and preliminarily evaluate its clinical application.Methods:Sixteen strains of Enterobacterales carrying different carbapenem resistance genes were selected to prepare simulated positive blood culture samples and Xpert Carba-R was used to directly detect carbapenem resistance genes in the simulated positive blood culture. From January 2022 to June, a prospective study was conducted on a total of 117 Enterobacteriaceae-positive blood culture samples in the First Affiliated Hospital of Nanjing Medical University. Xpert Carba-R, detecting five kinds of carbapenem resistance genes in these samples, was evaluated in sensitivity and specificity compared to polymerase chain reaction sequencing. Meanwhile clinical data of positive patients was collected for prognostic analysis. Results:Of the 16 simulated specimens, 14 strains had carbapenem resistance genes detected by Xpert Carba-R, including 8 bla KPC, 5 bla NDM and 1 bla IMP, showing 100% agreement with the known results. As of the 117 clinical specimens, 28 cases were determined to be Enterobacterales harboring carbapenem resistance genes, including 24 bla KPC, 2 bla NDM and 2 bla KPC+ bla NDM. In comparison to the PCR sequencing, the sensitivity and specificity of Xpert Carba-R were both 100% for blood culture samples, and furthermore, the detection time was significantly reduced. Of the 25 positive patients, 9 cases were treated with monotherapy and 5 cases were effective, other 16 cases received combined treatment and 12 cases were effective. A total of 17 cases were effective, 8 cases were ineffective and 3 of them died, the mortality rate was 12% (3/25). Conclusion:Xpert Carba-R can rapidly and accurately detect carbapenem resistance genes in blood culture, which can provide evidence for rational drug therapy in early clinical stage.
		                        		
		                        		
		                        		
		                        	
2.Analysis of pollution status and influencing factors of polybrominated diphenyl ethers in household dust in five cities in northern China
Xiaotong ZHANG ; Yun CAO ; Wenying ZHANG ; Linlin JIANG ; Mengmeng LIU ; Fengjing SONG ; Tingting LIU ; Chengyu CHEN ; Li LI ; Hang LIU ; Lin FAN ; Hang DU ; Yiming SUN ; Chao WANG ; Bin LUO ; Xianliang WANG
Chinese Journal of Preventive Medicine 2024;58(10):1514-1523
		                        		
		                        			
		                        			Objective:To investigate the pollution levels and influencing factors of polybrominated diphenyl ethers (PBDEs) in household dust in five cities in northern China.Methods:Based on the "Chinese Indoor Environment and Health Surveillance" project carried out by the National Institute of Environmental Health, Chinese Center for Disease Control and Prevention in 2018-2019, during the warm season (April 2018 to September 2018) and the cold season (November 2018 to March 2019), Lanzhou in Northwest China, Shijiazhuang in North China, Panjin in Northeast China, Luoyang in Central China, and Qingdao in East China were selected as the research sites. A total of 87 families were recruited to study residences in real-life scenarios. At the same time, dust samples were collected to detect the concentration of PBDEs. The level of household environmental indicators was measured, and the residential building characteristics and family behavior habits were collected through questionnaires. A total of 142 valid dust samples and 140 valid questionnaires were obtained. The differences in PBDE concentrations across seasons, wind zones, residential building characteristics, and family habits were analyzed. The exploratory factor analysis was performed to investigate the possible sources of PBDEs, and multivariate linear regression was used to explore the factors influencing PBDEs in household dust.Results:The M ( Q1,Q3) of total PBDE concentrations in 142 household dust samples in five cities was 144.51 (106.61, 222.65) ng/g in the warm season and 145.10 (98.57, 180.65) ng/g in the cold season, respectively. There were seasonal differences in the concentration of ∑ 12PBDEs in Luoyang and Shijiazhuang ( P<0.01). The concentration of BDE-71 was highest among PBDE homologues, followed by BDE-66 and BDE-47. Three factors were extracted by exploratory factor analysis in the warm season, and the cumulative variance contribution rate was 67.90%. The multivariate linear regression showed that the house completion less than ten years [ β (95% CI): 0.186 (0.013, 0.359)], infrequent home cooking [ β (95% CI):-0.342 (-0.570, -0.114)], and increased residential PM 10 concentration [ β (95% CI): 0.001 (0.000, 0.002)] during the warm season, as well as the house far from driveway [ β (95% CI): 0.093 (0.013, 0.172)], house area less than 90 m 2 [ β (95% CI):-0.138 (-0.264, -0.013)], and lower residential xylene concentration [ β (95% CI):-0.006 (-0.011, -0.001)] during the cold season might be related to the elevated concentrations of ∑ 12PBDEs in household dust. Conclusion:The pollution of PBDEs in household dust in five northern cities is at a medium to high level. Years of house completion, frequency of cooking at home, residential PM 10 concentration, distance from house to driveway, house area, and residential xylene concentration may influence household PBDE concentrations.
		                        		
		                        		
		                        		
		                        	
3.Analysis of pollution status and influencing factors of polybrominated diphenyl ethers in household dust in five cities in northern China
Xiaotong ZHANG ; Yun CAO ; Wenying ZHANG ; Linlin JIANG ; Mengmeng LIU ; Fengjing SONG ; Tingting LIU ; Chengyu CHEN ; Li LI ; Hang LIU ; Lin FAN ; Hang DU ; Yiming SUN ; Chao WANG ; Bin LUO ; Xianliang WANG
Chinese Journal of Preventive Medicine 2024;58(10):1514-1523
		                        		
		                        			
		                        			Objective:To investigate the pollution levels and influencing factors of polybrominated diphenyl ethers (PBDEs) in household dust in five cities in northern China.Methods:Based on the "Chinese Indoor Environment and Health Surveillance" project carried out by the National Institute of Environmental Health, Chinese Center for Disease Control and Prevention in 2018-2019, during the warm season (April 2018 to September 2018) and the cold season (November 2018 to March 2019), Lanzhou in Northwest China, Shijiazhuang in North China, Panjin in Northeast China, Luoyang in Central China, and Qingdao in East China were selected as the research sites. A total of 87 families were recruited to study residences in real-life scenarios. At the same time, dust samples were collected to detect the concentration of PBDEs. The level of household environmental indicators was measured, and the residential building characteristics and family behavior habits were collected through questionnaires. A total of 142 valid dust samples and 140 valid questionnaires were obtained. The differences in PBDE concentrations across seasons, wind zones, residential building characteristics, and family habits were analyzed. The exploratory factor analysis was performed to investigate the possible sources of PBDEs, and multivariate linear regression was used to explore the factors influencing PBDEs in household dust.Results:The M ( Q1,Q3) of total PBDE concentrations in 142 household dust samples in five cities was 144.51 (106.61, 222.65) ng/g in the warm season and 145.10 (98.57, 180.65) ng/g in the cold season, respectively. There were seasonal differences in the concentration of ∑ 12PBDEs in Luoyang and Shijiazhuang ( P<0.01). The concentration of BDE-71 was highest among PBDE homologues, followed by BDE-66 and BDE-47. Three factors were extracted by exploratory factor analysis in the warm season, and the cumulative variance contribution rate was 67.90%. The multivariate linear regression showed that the house completion less than ten years [ β (95% CI): 0.186 (0.013, 0.359)], infrequent home cooking [ β (95% CI):-0.342 (-0.570, -0.114)], and increased residential PM 10 concentration [ β (95% CI): 0.001 (0.000, 0.002)] during the warm season, as well as the house far from driveway [ β (95% CI): 0.093 (0.013, 0.172)], house area less than 90 m 2 [ β (95% CI):-0.138 (-0.264, -0.013)], and lower residential xylene concentration [ β (95% CI):-0.006 (-0.011, -0.001)] during the cold season might be related to the elevated concentrations of ∑ 12PBDEs in household dust. Conclusion:The pollution of PBDEs in household dust in five northern cities is at a medium to high level. Years of house completion, frequency of cooking at home, residential PM 10 concentration, distance from house to driveway, house area, and residential xylene concentration may influence household PBDE concentrations.
		                        		
		                        		
		                        		
		                        	
4.Focal-type, but not Diffuse-type, Amyloid Beta Plaques are Correlated with Alzheimer's Neuropathology, Cognitive Dysfunction, and Neuroinflammation in the Human Hippocampus.
Fan LIU ; Jianru SUN ; Xue WANG ; Sixuan JIN ; Fengrun SUN ; Tao WANG ; Bo YUAN ; Wenying QIU ; Chao MA
Neuroscience Bulletin 2022;38(10):1125-1138
		                        		
		                        			
		                        			Amyloid beta (Aβ) plaques are one of the hallmarks of Alzheimer's disease (AD). However, currently available anti-amyloid therapies fail to show effectiveness in the treatment of AD in humans. It has been found that there are different types of Aβ plaque (diffuse and focal types) in the postmortem human brain. In this study, we aimed to investigate the correlations among different types of Aβ plaque and AD-related neuropathological and cognitive changes based on a postmortem human brain bank in China. The results indicated that focal plaques, but not diffuse plaques, significantly increased with age in the human hippocampus. We also found that the number of focal plaques was positively correlated with the severity of AD-related neuropathological changes (measured by the "ABC" scoring system) and cognitive decline (measured by the Everyday Cognitive Insider Questionnaire). Furthermore, most of the focal plaques were co-localized with neuritic plaques (identified by Bielschowsky silver staining) and accompanied by microglial and other inflammatory cells. Our findings suggest the potential of using focal-type but not general Aβ plaques as biomarkers for the neuropathological evaluation of AD.
		                        		
		                        		
		                        		
		                        			Alzheimer Disease/pathology*
		                        			;
		                        		
		                        			Amyloid beta-Peptides/metabolism*
		                        			;
		                        		
		                        			Amyloid beta-Protein Precursor
		                        			;
		                        		
		                        			Brain/pathology*
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		                        			Cognitive Dysfunction/pathology*
		                        			;
		                        		
		                        			Hippocampus/metabolism*
		                        			;
		                        		
		                        			Humans
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		                        			Neuroinflammatory Diseases
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		                        			Plaque, Amyloid/pathology*
		                        			
		                        		
		                        	
5.Application effect of modified early warning scoring system in treatment of patients with multiple injuries in emergency department
Wenying WANG ; Yaqin LI ; Fulan FAN ; Jin ZHAO ; Yuanping ZHAO
Chinese Journal of Modern Nursing 2021;27(21):2905-2908
		                        		
		                        			
		                        			Objective:To explore the application effect of modified early warning scoring system in treatment of patients with multiple injuries in emergency department.Methods:Using the convenient sampling method, a total of 126 patients with multiple injuries who were admitted to Emergency Department of Heping Hospital Affiliated to Changzhi Medical College from January 2018 to December 2019 were selected as the research objects. The patients were divided into the control group and the intervention group by chronological order , with 63 cases in each group. The control group was given the traditional multi-injury routine first aid and monitoring plan, while the intervention group applied a modified early warning scoring system on the basis of the control group. The success rate of first aid and the degree of deterioration of patients were compared between the two groups.Results:After the implementation of modified early warning scoring system, the success rate of first aid of patients in the intervention group was higher than that of the control group and the degree of disease deterioration was lower than that of the control group, and the differences were statistically significant ( P<0.05) . Conclusions:The modified early warning scoring system has a significant application effect in emergency patients with multiple injuries, which can improve the success rate of treatment of patients and reduce the degree of disease deterioration.
		                        		
		                        		
		                        		
		                        	
6.Changes of brain function and cognitive function in patients with acute cerebellar stroke
Lin FAN ; Ying LIU ; Wenying MA ; Jingping SHI
Chinese Journal of Neurology 2019;52(4):281-287
		                        		
		                        			
		                        			Objective To investigate the changes of brain function and cognitive function in patients with acute cerebellar stroke using amplitude of low-frequency fluctuation (ALFF) and functional connection (FC).Methods The cognitive function assessment and resting state functional magnetic resonance (rs-fMRI) scan were performed on patients with acute cerebellar stroke hospitalized in Taizhou People's Hospital or Nanjing Brain Hospital from May 2017 to June 2018.The differences of ALFF and FC values were compared.Pearson correlation analysis was used to understand the correlation between FC values and cognitive function scores.A total of 32 patients with acute cerebellar stroke and 34 healthy controls were included.Results Compared with the healthy controls,the scores of Montreal Cognitive Assessment (23.97 ± 6.04 vs 26.56 ± 2.93,t=-2.237,P=0.029),the Rey Auditory Verbal Learning Test (RAVLT;3(2) vs 6(2),Z=-4.136,P=0.000) were significantly lower,and the time consuming of Trail Making Test(TMT)-B ((251.56 ± 112.62) s vs (164.76± 52.37) s) was significantly higher (t=4.054,P=0.000) in the patients with acute cerebellar stroke.The rs-fMRI results showed significant group differences in ALFF values at the four brain regions,including the right frontal lobe,left hippocampus,right cingulate gyrus and cerebellum posterior lobe.The regions that showed significant group differences were set as regions of interest (ROIs),and then the functional connectivity between ROIs and the whole brain were analyzed.The results showed significant positive correlation between the RAVLT scores and the FC values from the left hippocampus to the left frontal lobe (r=0.272,P=0.031).The FC values from the right cingulate gyrus to right inferior parietal lobule were found to be correlated positively with the scores on the TMT-B (r=0.410,P=0.023).Conclusions The patients with cerebellar stroke had cognitive impairment,mainly in memory and executive function.The changes of ALFF and FC values in related brain area from cerebellar stroke enrich our understanding of cerebellar involvement in cognitive performance.
		                        		
		                        		
		                        		
		                        	
8.Determination and optimization of extraction process of the content of plantamajoside in plantain
Ang LÜ ; Xin FAN ; Qian SU ; Wenying YU ; Chenhuan YU
Journal of Pharmaceutical Practice 2019;37(1):77-79,90
		                        		
		                        			
		                        			Objective To establish a method for determination and optimize the extraction process of the content of plantamajoside in plantain.Methods Plantamajoside content was determined by HPLC.The effects of ethanol concentration, ethanol amount and extraction time on the extraction of plantamajoside from plantain were studied by orthogonal design.Results The calibration curve was linear (r=0.999 6) over the range of 12.52-125.10μg/ml.The average recovery was 98.57% (RSD=1.45%).The optimum extraction process was as follows:60%ethanol, 10times volumes, extracted 2times, 1heach time.Conclusion The established method was simple, accurate and reproducible for determination of the content of plantamajoside in plantain.The optimal extraction process was stable and feasible.
		                        		
		                        		
		                        		
		                        	
9.Tung Tree (Vernicia fordii) Genome ProvidesA Resource for Understanding Genome Evolution and Improved Oil Production
Zhang LIN ; Liu MEILAN ; Long HONGXU ; Dong WEI ; Pasha ASHER ; Esteban EDDI ; Li WENYING ; Yang XIAOMING ; Li ZE ; Song AIXIA ; Ran DUO ; Zhao GUANG ; Zeng YANLING ; Chen HAO ; Zou MING ; Li JINGJING ; Liang FAN ; Xie MEILI ; Hu JIANG ; Wang DEPENG ; Cao HEPING ; Provart J. NICHOLAS ; Zhang LIANGSHENG ; Tan XIAOFENG
Genomics, Proteomics & Bioinformatics 2019;17(6):558-575
		                        		
		                        			
		                        			Tung tree (Vernicia fordii) is an economically important woody oil plant that produces tung oil rich in eleostearic acid. Here, we report a high-quality chromosome-scale genome sequence of tung tree. The genome sequence was assembled by combining Illumina short reads, Pacific Bio-sciences single-molecule real-time long reads, and Hi-C sequencing data. The size of tung tree gen-ome is 1.12 Gb, with 28,422 predicted genes and over 73% repeat sequences. The V. fordii underwent an ancient genome triplication event shared by core eudicots but no further whole-genome duplication in the subsequent ca. 34.55 million years of evolutionary history of the tung tree lineage. Insertion time analysis revealed that repeat-driven genome expansion might have arisen as a result of long-standing long terminal repeat retrotransposon bursts and lack of efficient DNA deletion mechanisms. The genome harbors 88 resistance genes encoding nucleotide-binding sites;17 of these genes may be involved in early-infection stage of Fusarium wilt resistance. Further, 651 oil-related genes were identified, 88 of which are predicted to be directly involved in tung oil biosynthesis. Relatively few phosphoenolpyruvate carboxykinase genes, and synergistic effectsbetween transcription factors and oil biosynthesis-related genes might contribute to the high oil content of tung seed. The tung tree genome constitutes a valuable resource for understanding genome evolution, as well as for molecular breeding and genetic improvements for oil production.
		                        		
		                        		
		                        		
		                        	
10.Association of-429T/C and G1704 polymorphisms in the receptor for advanced glycation end products gene with proliferative diabetic retinopathy
Wenwen WEI ; Wenying FAN ; Peibei WU ; Xiufen YANG ; Kai MA ; Ningpu LIU
Chinese Journal of Ocular Fundus Diseases 2016;32(2):130-134
		                        		
		                        			
		                        			Objective To determine the association of-429T/C and G1704T polymorphisms in the receptor for advanced glycation end products gene with proliferative diabetic retinopathy (PDR).Methods Case-control study.From the Beijing Desheng Diabetic Eye Study cohort of 1467 patients with type 2 diabetes mellitus (T2DM),a total of 97 patients with PDR and 105 diabetic patients without retinopathy (DWR,duration of diabetes 15 years) were included for this study.Questionnaires were collected and general ophthalmologic examinations were performed.Biochemical analysis was conducted.DNA was extracted from peripheral venous blood.The-429T/C and G1704T single nucleotide polymorphisms were detected by the means of PCR-restrication fragment length polymorphisms.Results The frequency distribution of-429T/C in DWR group was 81.0% in TT,16.1% in TC,2.9% in CC.The frequency distribution of-429T/C in PDR group was 77.3% in TT,20.6% in TC,2.1% in CC.There was no significant statistical difference between the two groups (x2 =0.40,P>0.05).Frequency of the-429T/C minor allele C in the DWR and PDR group were 11.0% and 12.4%,respectively,with no significant statistical difference between the two groups (x2 =0.20,P>0.05).The frequency distribution of G1704T in DWR group was 66.7% in GG,29.5% in GT,3.8% in TT.The frequency distribution of G1704T in PDR group was 78.4% in GG,21.6% in GT.There was no significant statistical difference between the two groups (x2 =3.44,P>0.05).Frequency of the G1704T minor allele T in the DWR and PDR group were 18.6 % and 10.8 %,respectively,in which significant difference was found within the two groups (x2 =4.79,OR=1.88,95%CI:1.06-3.33,P<0.05).Conclusions G1704T polymorphism is associated with PDR presence and 1704G allele may increase the risk of PDR.
		                        		
		                        		
		                        		
		                        	
            
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