1.Prenatal diagnosis and genetic counselling for a pedigree carrying a large fragment deletion of 13q.
Qinghua WU ; Xin CHEN ; Saisai YANG ; Shumin REN ; Zhihui JIAO ; Yaqin HOU ; Yongjiang ZHAO ; Yibing CHEN ; Huirong SHI ; Xiangdong KONG
Chinese Journal of Medical Genetics 2022;39(3):334-337
OBJECTIVE:
To carry out prenatal diagnosis for a fetus with normal ultrasonographic finding at 20 weeks' gestation but a copy number variant(CNV) of 13q indicated by non-invasive prenatal test (NIPT).
METHODS:
Karyotyping analysis and chromosomal CNV assay were carried out on the amniotic fluid sample. Parental peripheral blood sample was collected for chromosomal analysis. Detailed fetal ultrasound scan was carried out to rule out structural abnormalities of the fetus.
RESULTS:
The fetus was detected with a heterozygous 10.14 Mb deletion at 13q21.1q21.32, which has originated from the phenotypically normal mother. No apparent karyotypic abnormality was detected in the fetus and its parents. No ultrasonic abnormality was found in the fetus.
CONCLUSION
Both the fetus and its mother have carried a heterozygous 10.14 Mb deletion at 13q21.1q21.32 and presented normal phenotypes.Combined with literature review, the segmental deletion was judged to be a benign variant.
Female
;
Genetic Counseling
;
Humans
;
Karyotyping
;
Pedigree
;
Pregnancy
;
Prenatal Diagnosis
;
Ultrasonography, Prenatal
2.The phenotypes and genotypes of four patients with Dubin-Johnson syndrome.
Qinghua WU ; Beibei MA ; Saisai YANG ; Zhihui JIAO ; Xin CHEN ; Shumin REN ; Yibing CHEN ; Huirong SHI ; Xiangdong KONG
Chinese Journal of Medical Genetics 2022;39(10):1065-1069
OBJECTIVE:
To explore the genetic etiology in four patients with hyperbilirubinemia, and discuss the correlation between clinical characteristics and molecular basis.
METHODS:
The data of clinical manifestation and auxiliary examinations were collected. Genomic DNA of the four patients was extracted and analyzed by next-generation sequencing using the panel including genes involved in hereditary metabolic liver diseases. Suspected variants were verified by Sanger sequencing.
RESULTS:
All of the four patients were males with normal liver enzymes. It was revealed that all the patients had heterozygous variants, among which c.3011C>T, c.2443C>T and c.2556del were the variants which have not been reported previously.
CONCLUSION
All of the patients were diagnosed as Dubin-Johnson syndrome (DJS) caused by ABCC2 gene variants. The novel variants add to the spectrum of genetic variants of the disease. Because of the favorite prognosis, precise diagnosis can greatly reduce the psychological pressure of patients and avoid excessive treatments. At the same time, it could provide pertinent genetic counseling for the families.
DNA
;
Female
;
Heterozygote
;
Humans
;
Jaundice, Chronic Idiopathic/genetics*
;
Male
;
Multidrug Resistance-Associated Protein 2
;
Multidrug Resistance-Associated Proteins/genetics*
;
Phenotype
3.Analysis of OTOGL gene variants in a child with moderate non-syndromic hearing loss.
Chinese Journal of Medical Genetics 2021;38(8):761-764
OBJECTIVE:
To explore the genetic basis for a child with moderate non-syndromic hearing loss.
METHODS:
Next generation sequencing was carried out for the child. Co-segregation of the phenotype and candidate variants was verified among his family members by Sanger sequencing.
RESULTS:
The child was found to harbor biallelic variants of the OTOGL gene, namely c.2773C>T (p.Arg925Ter) and c.2826C>G (p.Tyr942Ter), which were respectively inherited from his phenotypically normal father and mother. Both variants were predicted to cause premature termination of protein synthesis and be disease causing by MutationTaster software. The c.2826C>G (p.Tyr942Ter) variant has not been recorded in the Human Gene Mutation Database. Based on the guidelines of the American College of Medical Genetics and Genomics, both variants were predicted to be pathogenic (PVS1+PM2+PM4+PP3+PP5 and PVS1+PM2+PM4+PP3, respectively).
CONCLUSION
The c.2773C>T (p.Arg925Ter) and c.2826C>G (p.Tyr942Ter) variants of the OTOGL gene probably underlay the hearing loss in this child.
Child
;
Deafness
;
Family
;
Genomics
;
Humans
;
Membrane Proteins/genetics*
;
Mutation
;
Pedigree
;
Phenotype
4.Analysis of TMC1 gene variants and prenatal diagnosis in four Chinese families affected with deafness.
Shumin REN ; Chen CHEN ; Xiangdong KONG
Chinese Journal of Medical Genetics 2021;38(1):37-41
OBJECTIVE:
To explore the genetic basis of four Chinese families affected with deafness.
METHODS:
All probands were subjected to next generation sequencing (NGS). Suspected variant were verified by Sanger sequencing among the family members. Prenatal diagnosis was provided for three couples through Sanger sequencing.
RESULTS:
All probands were found to carry pathogenic variants of the TMC1 gene, which included c.100C>T (p.R34X) and c.642+4A>C in family 1, c.582G>A (p.W194X) and c.589G>A (p.G197R) in family 2, c.1396_1398delAAC and c.1571T>C (p.F524S) in family 3, and homozygosity of c.2050G>C (p.D684H) in family 4. All parents were heterozygous carriers of the variants. The c.642+4A>C and c.1571T>C (p.F524S) were unreported previously. Prenatal diagnosis revealed that none of the fetuses were affected. Follow-up confirmed that all newborns had normal hearing.
CONCLUSION
Variant of the TMC1 gene probably underlay the deafness in the four families. Above findings have enhanced our understanding of the function of the TMC1 gene and enriched its variant spectrum. The results also facilitated genetic counseling and prenatal diagnosis for the families.
China
;
Deafness/genetics*
;
Female
;
Genetic Variation
;
Humans
;
Infant, Newborn
;
Male
;
Membrane Proteins/genetics*
;
Mutation
;
Pedigree
;
Pregnancy
;
Prenatal Diagnosis
5.Establishment of human colon cancer transplantation tumor model in normal immune mice
Shumin CHENG ; Jianling LIU ; Tong CHEN ; Yanzhen BI ; Kunyan LIU ; Quanyi WANG ; Huixin TANG ; Yonghong YANG ; Xiaobei ZHANG ; Ruirui HU ; Suqin LIU ; Kai ZHANG ; Lingbin KONG ; Daolu GUO ; Zhenfeng SHU ; Feng HONG
Chinese Journal of Oncology 2021;43(9):939-943
Objective:Establishment of a new model of human primary colon cancer transplantation tumor in normal immune mice and to provide a reliable experimental animal model for studying the pathogenesis of colon cancer under normal immunity.Methods:Human colon cancer cells come from colon cancer patients who underwent surgery in the Affiliated Hospital of Jining Medical College in 2017. The mice in the cell control group were inoculated with phosphate buffered solution (PBS) containing colon cancer cells, the microcarrier control group was inoculated with PBS containing microcarrier 6, and the cell-microcarrier complex group was inoculated with the PBS containing colon cancer cell-microcarrier complex. The cells of each group were inoculated under the skin of the right axilla of mice by subcutaneous injection, and the time, size, tumor formation rate and pathological changes under microscope were recorded. The transplanted tumor tissue was immunohistochemically stained with the EnVisiion two-step method, and the tumor formation rate of the transplanted tumor was judged according to the proportion of positive cells in the visual field. The polymerase chain reaction (PCR) method was used to detect the expression of human-specific Alu sequence in mice tumor tissue.Results:After inoculation with tumor cells, the mice in the cell control group and the microcarrier control group did not die and did not form tumors; the mice in the cell-microcarrier complex group had palpable subcutaneous tumors in the right axillary subcutaneously on the 5th to 7th days after inoculation, and tumor formation rate is 67% (10/15), and the tumor volume can reach about 500 mm 3 2 to 3 weeks after vaccination. The immunohistochemistry results showed that CK20, CDX-2 and carcinoembryonic antigen were all positively expressed. The PCR results showed that the expression of human-specific Alu sequence can be detected in the transplanted tumor tissue of tumor-bearing mice. Conclusion:Human primary colon cancer cells used microcarrier 6 as a carrier to form tumors in normal immunized mice, and successfully established a new model of human colon cancer transplantation tumor in normal immune mice.
6.Establishment of human colon cancer transplantation tumor model in normal immune mice
Shumin CHENG ; Jianling LIU ; Tong CHEN ; Yanzhen BI ; Kunyan LIU ; Quanyi WANG ; Huixin TANG ; Yonghong YANG ; Xiaobei ZHANG ; Ruirui HU ; Suqin LIU ; Kai ZHANG ; Lingbin KONG ; Daolu GUO ; Zhenfeng SHU ; Feng HONG
Chinese Journal of Oncology 2021;43(9):939-943
Objective:Establishment of a new model of human primary colon cancer transplantation tumor in normal immune mice and to provide a reliable experimental animal model for studying the pathogenesis of colon cancer under normal immunity.Methods:Human colon cancer cells come from colon cancer patients who underwent surgery in the Affiliated Hospital of Jining Medical College in 2017. The mice in the cell control group were inoculated with phosphate buffered solution (PBS) containing colon cancer cells, the microcarrier control group was inoculated with PBS containing microcarrier 6, and the cell-microcarrier complex group was inoculated with the PBS containing colon cancer cell-microcarrier complex. The cells of each group were inoculated under the skin of the right axilla of mice by subcutaneous injection, and the time, size, tumor formation rate and pathological changes under microscope were recorded. The transplanted tumor tissue was immunohistochemically stained with the EnVisiion two-step method, and the tumor formation rate of the transplanted tumor was judged according to the proportion of positive cells in the visual field. The polymerase chain reaction (PCR) method was used to detect the expression of human-specific Alu sequence in mice tumor tissue.Results:After inoculation with tumor cells, the mice in the cell control group and the microcarrier control group did not die and did not form tumors; the mice in the cell-microcarrier complex group had palpable subcutaneous tumors in the right axillary subcutaneously on the 5th to 7th days after inoculation, and tumor formation rate is 67% (10/15), and the tumor volume can reach about 500 mm 3 2 to 3 weeks after vaccination. The immunohistochemistry results showed that CK20, CDX-2 and carcinoembryonic antigen were all positively expressed. The PCR results showed that the expression of human-specific Alu sequence can be detected in the transplanted tumor tissue of tumor-bearing mice. Conclusion:Human primary colon cancer cells used microcarrier 6 as a carrier to form tumors in normal immunized mice, and successfully established a new model of human colon cancer transplantation tumor in normal immune mice.
7.Preliminary study on prevention and treatment of experimental autoimmune uveitis by blocking CD73 detachment from the surface of retinal pigment epithelial cells with matrix metalloprotein-9 inhibitor
Shumin ZHOU ; Fanqiang KONG ; Song CHEN
Chinese Journal of Ocular Fundus Diseases 2020;36(4):289-294
Objective:To preliminarily investigate the mechanism of MMP-9 blocking CD73 detachment from RPE cells surface and preventing and treating experimental autoimmune pigment membranitis(EAU).Methods:RPE cells isolated from wild-type C57BL/6 and CD73 gene knockout (CD73 -/-) mice were cultured in vitro, and treated with lipopolysaccharide and TNF-α to induce CD73 detachment from RPE surface. According to whether MMP-9 inhibitor CTK8G1150 was added at the same time (the final concentration was 5.0 mol/L) or not, RPE cells cultured in the two types of mice were respectively set as MMP-9 inhibitor intervention group and non-intervention control group. The cells in each group were treated with the intervention of a solvent, 1 μmol/Ladenosine monophosphate (AMP), 1 μmol/L AMP, and 3 μmol/L 5' -α,β-methylene adenosine diphosphate (APCP) (AMP+APCP). The stimulating effect of RPE cells in different groups on CD4 + T cell proliferation was detected by tritiated thymidine incorporation. Adoptive immune induced EAU in wild-type B6 mice and CD73 -/- mice, respectively. The receptor mice were randomly divided into the MMP-9 inhibitor intervention group and the non-intervention control group, and CTK8G1150 or the solvent were injected into the subretinal cavity 4, 7 and 10 days after adoptive immunity. CD73 mRNA and protein expression in RPE cells of recipient mice were detected by real-time quantitative PCR (RT-PCR) and Western blot. One-way ANOVA was used to analyze all experimental data. Results:When the stimulation mode was AMP, the proliferation of CD4 + T cells in the C57BL/6 MMP-9 inhibitor intervention group decreased significantly compared with the nonintervention group ( F=13.28, P<0.01). When the stimulation mode was solvent and AMP+APCP, there was no statistically significant difference in the proliferation capacity of CD4 + T cells between the two groups ( F=7.78, 6.58; P>0.05). There was no statistically significant difference in the proliferation capacity of CD4 + T cells between the CD73 -/- MMP-9 inhibitor intervention group and the non-intervention group ( F=5.24, 6.12, 7.04; P>0.05). RT-PCR results showed that there was no statistically significant difference in the relative expression of CD73 mRNA in RPE cells between the MMP-9 inhibitor group and the non-intervention control group( F=6.54, P>0.05). Western blot results showed that the expression of CD73 protein in RPE cells in the MMP-9 inhibitor group of B6 receptor mice was significantly increased compared with the control group ( F=15.24, P<0.01). Conclusion:MMP-9 inhibitor blocks CD73 detachment from RPE cells surface and has a protective effect on EAU.
8.Prenatal diagnosis of a fetus with X-linked hypohidrotic ectodermal dysplasia.
Fuhua DUAN ; Conghui WANG ; Shumin REN ; Xiangdong KONG
Chinese Journal of Medical Genetics 2020;37(11):1269-1271
OBJECTIVE:
To detect variant of EDA gene in a fetus with absence of germ teeth detected by prenatal ultrasonography.
METHODS:
Clinical data and amniotic fluid and peripheral venous blood samples of the pregnant woman were collected for the analysis. Following extraction of genome DNA, the coding regions of the EDA gene were amplified by PCR and subjected to next-generation sequencing. Candidate variant was verified by Sanger sequencing.
RESULTS:
The pregnant woman was found to carry a heterozygous c.574G>A variant in the EDA gene, for which the fetus was hemizygous. Bioinformatic analysis suggested the variant to be pathogenic.
CONCLUSION
Combined ultrasonographic and genetic findings suggested the fetus is affected with X-linked hypohidrotic ectodermal dysplasia due to pathogenic variant of the EDA gene.
Ectodermal Dysplasia 1, Anhidrotic/genetics*
;
Ectodysplasins/genetics*
;
Female
;
Fetus
;
Humans
;
Mutation
;
Pedigree
;
Pregnancy
;
Prenatal Diagnosis
9.Ultrasonographic manifestation and genetic analysis of a fetus with nephronophthisis type 2.
Qinghua WU ; Saisai YANG ; Can WANG ; Huirong SHI ; Shumin REN ; Zhihui JIAO ; Xiangdong KONG
Chinese Journal of Medical Genetics 2020;37(5):559-562
OBJECTIVE:
To carry out genetic analysis for a family with a fetus manifesting bilateral polycystic renal dysplasia and oligohydramnios at 16 gestational week and a previous history for fetal renal anomaly.
METHODS:
Ultrasound scan was carried out to detect the morphological changes. Following genetic counselling, the parents had decided to terminate the pregnancy. Fetal kidneys were subjected to histological examination. Target capture and next generation sequencing (NGS) was applied to the abortus to detect potential variants. The results were verified by Sanger sequencing.
RESULTS:
Histological examination of fetal kidneys revealed cystic changes without cortex, medulla or normal renal structure. NGS has identified a heterozygous c.100+1G>A variant and deletion of exon 3 of the INVS gene, which were respectively inherited from the mother and father.
CONCLUSION
Through NGS and Sanger sequencing, the fetus was diagnosed with type II nephronophthisis (NPHP2). Above result can provide guidance for further pregnancy and enforce understanding of clinical features and genetic etiologies for NPHP.
Female
;
Fetus
;
Genetic Testing
;
Heterozygote
;
Humans
;
Mutation
;
Polycystic Kidney, Autosomal Dominant
;
diagnostic imaging
;
genetics
;
Pregnancy
;
Sequence Deletion
;
genetics
;
Transcription Factors
;
genetics
;
Ultrasonography
10.Clinical phenotype and genetic analysis of three pedigrees with 17q12 microdeletion syndrome.
Qinghua WU ; Saisai YANG ; Can WANG ; Huirong SHI ; Xiangdong KONG ; Shumin REN ; Zhihui JIAO ; Ning LIU ; Panlai SHI
Chinese Journal of Medical Genetics 2020;37(4):397-400
OBJECTIVE:
To explore the genetic etiology of three pedigrees with a gestational history of fetal renal anomalies.
METHODS:
Peripheral venous blood or skin samples were derived from the probands of the three pedigrees. Copy number variation sequencing (CNV-seq) was applied to detect alterations of genome CNVs.
RESULTS:
The patient from pedigree 1 and the fetuses from pedigrees 2 and 3 all carried a heterozygous 17q12 deletion, with the size ranging from 1.4 Mb to 1.48 Mb encompassing the HNF1B gene.
CONCLUSION
The diagnosis of 17q12 microdeletion may be difficult during fetal period for its variable phenotypes. Alterations of chromosomal copy numbers need to be excluded in such patients.
Chromosome Deletion
;
Chromosomes, Human, Pair 17
;
genetics
;
DNA Copy Number Variations
;
Fetus
;
Genetic Testing
;
Hepatocyte Nuclear Factor 1-beta
;
genetics
;
Humans
;
Pedigree
;
Phenotype

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