1.Interpretation of "Single-cell and spatial genomic landscape of non-small cell lung cancer brain metastases"
Shishi ZOU ; Ruyuan HE ; Guoqing LUO ; Ning LI ; Qing GENG
Chinese Journal of Clinical Thoracic and Cardiovascular Surgery 2025;32(07):953-957
Non-small cell lung cancer is one of the primary types of cancer that leads to brain metastases. Approximately 10% of patients with non-small cell lung cancer have brain metastases at the time of diagnosis, and 26%-53% of patients develop brain metastases during the progression of their disease. However, the underlying mechanisms of lung cancer brain metastasis have not been fully elucidated. With the continuous development of single-cell and spatial transcriptomics, the genomic and transcriptomic characteristics of lung cancer brain metastasis are gradually being revealed. In February 2025, the journal Nature Medicine published an article titled "Single-cell and spatial genomic landscape of non-small cell lung cancer brain metastases". This article aims to provide a brief interpretation of the paper for colleagues in research and clinical practice.
2.Effect of laser-assisted hatching on birth weight in blastocyst cultureof low-grade cleavage embryos
LI Shishi ; ZHU Zhonglin ; SHU Chongyi ; XU Weihai
Journal of Preventive Medicine 2024;36(2):169-172
Objective:
To examine the impact of laser-assisted hatching (LAH) technique on perinatal outcomes in blastocyst culture of low-grade cleavage embryos, so as to provide insights into improving the utilization of low-grade cleavage embryos and embryo quality.
Methods:
A total of 369 single live births after transfer of thawed blastocysts following in vitro fertilization or intracytoplasmic sperm injection at Zhejiang Provincial People's Hospital were selected as subjects, and they were divided into 51 conventional culture blastocysts and 318 LAH blastocysts based on whether LAH was performed on day 4 of blastocyst culture. Gestational age, birth weight, birth defects and maternal perinatal information were collected, and the prevalence of premature birth, birth weight and birth defects were analyzed after propensity score matching (PSM).
Results:
After PSM, 98 matched cases were included in the study. There were no statistically significant differences in maternal age, body mass index, type of infertility and blastocyst age (P>0.05), indicating effective matching. The birth weight of offspring in the LAH group was lower than that in the conventional culture group [(3 261.08±432.24) g vs. (3 464.18±444.46) g; P<0.05].
Conclusion
The birth weight of offspring can be reduced by using LAH during blastocyst culture of low-grade cleavage embryos.
3.Research Progress on Tumor Metabolic Biomarkers in Liquid Biopsy of Lung Cancer
ZOU SHISHI ; LI NING ; ZHANG TIANYU ; GENG QING
Chinese Journal of Lung Cancer 2024;27(2):126-132
Liquid biopsy is gradually being applied in the clinical diagnosis and treatment of lung cancer.At pres-ent,with the development of metabolomics,more and more metabolic biomarkers are considered as potential sensitive mark-ers reflecting the occurrence and development of tumors.This article summarizes the changes in the main metabolic pathways of lung cancer,including glucose metabolism,amino acid metabolism,lipid metabolism,sphingolipid metabolism,glycero-phospholipid metabolism,and purine metabolism.Meanwhile,this article reviews the role of metabolic biomarkers in the early diagnosis of lung cancer,predicting disease progression,and evaluating the efficacy of chemotherapy and immunotherapy,aim-ing to provide effective biomarkers for tumor diagnosis and treatment.
4.Study on the Prediction of Incidence of Hemorrhagic Fever with Renal Syndrome Based on the SARIMA-LSTM Model
Shishi TANG ; Yuxuan LI ; Shengsheng TANG ; Qinghua LIU ; Yi ZHOU
Journal of Medical Informatics 2024;45(8):71-77
Purpose/Significance To investigate the application of cutting-edge technologies in predicting the incidence of hemor-rhagic fever with renal syndrome(HFRS),to compile and integrate various time-series analysis methods,evaluate and select the opti-mal model.Method/Process By utilizing national HFRS incidence data from 2004 to 2020,the effectiveness of models is predicted based on statistical methods:SARIMA,STL-ARIMA and TBATS,neural network approaches:NNAR,LSTM and combined models of SARIMA-LSTM with 3 different weighting schemes.The performance of these models is comprehensively assessed using RMSE,MAE and MAPE.Result/Conclusion The SARIMA and LSTM models are identified as the superior individual models.The combined SARI-MA-LSTM model demonstrates enhanced performance compared to individual models.The SARIMA-LSTM model optimized using the reciprocal of error method is deemed the optimal model.The optimal model is expected to provide technical support and references for the early warning system model design of HFRS.
5.Immune Checkpoint Inhibitors Related Cystoureteritis: A Case Report and Literature Review.
Shishi LI ; Ke ZHENG ; Yan XU ; Mengzhao WANG
Chinese Journal of Lung Cancer 2023;26(9):709-716
A patient with advanced lung adenocarcinoma developed symptoms of frequent urination and urgent urination after 14 cycles of Pembrolizumab combined with chemotherapy. After making comprehensive analysis of the results of urine routine test, renal function, cystoscope and computed tomography (CT) examination, immune checkpoint inhibitors related cystoureteritis and acute kidney injury were considered. The patient's symptoms were relieved after discontinuation of Pembrolizumab combined with chemotherapy. However, the symptoms of urinary irritation worsened significantly after rechallenging Pembrolizumab combined with chemotherapy, and the symptoms was relieved after corticosteroids treatment. If patients develop urinary symptoms during immune checkpoint inhibitors treatment, immune checkpoint inhibitors related cystoureteritis should be considered for early differential diagnosis in order to implement appropriate treatment.
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Humans
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Immune Checkpoint Inhibitors/therapeutic use*
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Lung Neoplasms/pathology*
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Adenocarcinoma of Lung/drug therapy*
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Tomography, X-Ray Computed
6.Construction of recombinant herpes simplex virus 2 expressing enhanced green fluorescent protein using CRISPR/Cas9
Wenhao SU ; Xiuxiu REN ; Tingting ZHAO ; Yinan WANG ; Shishi LI ; Qiufang HUANG ; Xiaojie WANG ; Xiaohuan ZHANG ; Jiangbo WEI
Chinese Journal of Microbiology and Immunology 2022;42(5):369-375
Objective:To construct a recombinant herpes simplex virus 2 (HSV-2) expressing enhanced green fluorescent protein (EGFP) using clustered, regularly interspaced, short palindromic repeat/CRISPR-associated nuclease 9 (CRISPR/Cas9) technology.Methods:Four strategies for inserting exogenous EGFP gene into HSV-2 genome using CRISPR/Cas9 technology were designed: (1) conventional homology-directed repair: circular two homology arm donor-mediated gene knock-in; (2) linearized single homology arm donor-mediated gene knock-in; (3) homology-independent targeted integration; (4) conventional homology-directed repair-mediated by cell lines stably expressing Cas9 and sgRNA.Results:The recombinant virus HSV-2-EGFP was successfully constructed based on the second, the third and the fourth strategies. The second strategy was the most efficient, followed by the third and the fourth strategies. The purified recombinant virus could stably express green fluorescent protein in seven passages and shared similar growth characteristics in Vero cells to the parental virus.Conclusions:Linearized single homology arm donor could increase the efficiency of gene knock-in, and cell lines stably expressing Cas9 and sgRNA could increase the efficiency of gene knock-in mediated by homology-directed repair.
7.Effects of genomic location of foreign gene in measles virus vector on gene expression and virus replication
Wenhao SU ; Xiuxiu REN ; Tingting ZHAO ; Yinan WANG ; Shishi LI ; Qiufang HUANG ; Xiaojie WANG ; Xiaohuan ZHANG ; Jiangbo WEI
Chinese Journal of Microbiology and Immunology 2022;42(12):924-930
Objective:To investigate the effects of genomic location of a foreign gene in Shanghai-191 strain measles virus (MV) vector on gene expression and virus replication.Methods:The nucleotide sequence encoding S1 protein of SARS-CoV-2 was inserted at different positions in MV antigenome (the upstream of the N gene, between P and M genes, between H and L genes), and co-transfected into 293T cells with helper plasmids coding T7 RNA polymerase and N, P, and L proteins, respectively. The transfected cells were lysed and the supernatants were used to infected Vero cells to harvest recombinant viruses. S1 proteins expressed by the recombinant viruses were identified by RT-PCR, indirect immunofluorescence assay, Western blot and ELISA. Growth kinetics of the recombinant viruses were analyzed.Results:Recombinant viruses were failed to be rescued when the S1 protein-coding sequence was cloned into the upstream of N gene. Two recombinant viruses, MV-M-S1 and MV-L-S1, were successfully rescued when cloning the S1 protein-coding sequence into the intergenic region between P and M genes, or H and L genes, and could express S1 protein. MV-M-S1 expressed more S1 protein than MV-L-S1, but the titer of MV-M-S1 was lower.Conclusions:Inserting a foreign gene at different positions in the MV genome might have different effects on gene expression and virus replication. This study provided reference for the subsequent construction of MV vector.
8.A case of inherited afibrinogenemia caused by an IVS7-12A>G splice mutation of FGG gene.
Xiaoou WANG ; Xiao YANG ; Jinle WANG ; Kuangyi SHU ; Fanfan LI ; Wei YANG ; Jichen RUAN ; Shishi WANG ; Minghua JIANG
Chinese Journal of Medical Genetics 2020;37(12):1391-1394
OBJECTIVE:
To explore the genetic basis for a Chinese pedigree affected with inherited afibrinogenemia.
METHODS:
For the proband and his family members, prothrombin time (PT), activated partial thromboplastin time (APTT), thrombin time (TT), Fibrin(ogen) degradation products (FDPs), D-dimer (D-D), plasminogen activity (PLG:A) and the TT mixed experiment with protamine sulfate were determined with a STAGO-R automatic coagulation analyzer. The activity and antigen of fibrinogen (Fg) in plasma were measured with the Clauss method and immunonephelometry method, respectively. All exons and flanking regions of the fibrinogen genes (FGA, FGB and FGG) were amplified by PCR and directly sequenced. Human Splicing Finder software was used to predict and score the change of splicing site caused by the mutation.
RESULTS:
The proband showed normal FDPs and D-D but significantly prolonged TT, PT and APTT. The activity and antigen of fibrinogen in plasma were significantly decreased (<0.1 g/L). His young sister and parents showed slightly prolonged TT (18.20-18.50 s) and decreased fibrinogen activity (1.27-1.54 g/L) and fibrinogen antigenic content (1.34-1.56 g/L). Genetic testing revealed that the proband has carried homozygous IVS7-12A>G (g.4147A>G) mutations of the FGG gene, for which his parents and young sister were heterozygous. As predicted by Human Splicing Finder and Mutation Taster software, the variant may generate a new splicing site which can extend the sequence of exon 7 by 11 bp, with alteration of the coding sequence. PROVEAN suggested the variant to be deleterious.
CONCLUSION
The afibrinogenemia of the proband may be attributed to the FGG IVS7-12A>G variant, which was unreported previously.
Adult
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Afibrinogenemia/genetics*
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Female
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Fibrinogen/genetics*
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Heterozygote
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Humans
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Male
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Mutation
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Pedigree
9.MCC950, a NLRP3 inflammasome inhibitor, prevents radiation-induced cognitive impairment in mice
Zhenghai LIU ; Shishi LUO ; Zhen WANG ; Yang XU ; Jie HE ; Wuzhou WANG ; Shuya HE ; Xiaohong AI ; Cai LI ; Wenyu CAO
Chinese Journal of Radiological Medicine and Protection 2020;40(10):733-739
Objective:To investigate the effect of MCC950 (a NLRP3 inflammasome inhibitor) on cognitive impairment in mice with radiation-induced inflammatory brain injury.Methods:Mice were divided into normal (NS) group, whole body irradiation (IR) group and MCC950 intervention post irradiation (IR+ MCC950) group according to the random number table method, with 15 mice in each group. The mice in IR group and IR+ MCC950 group were irradiated with a single dose of 4.0 Gy. The radiation source was 137Cs and the dose rate was 1.118 Gy/min. The mice in NS group were not irradiated. Mice in IR+ MCC950 group were injected intraperitoneally with MCC950 once a day (10 mg/kg each time) from 3 weeks after irradiation. Behavioral tests such as new and old things recognition experiment and social cognition experiment were used to detect the cognitive function of mice. Immunohistochemistry was used to detect the expression of NeuN protein in CA3 area of mouse hippocampus. PCR and Western blot were used to detect the expression of NLRP3 inflammatory body related protein. Results:Compared with NS group, the short-term and long-term recognition index of new and old things in the IR group decreased significantly ( t=4.321, 5.473, P<0.01), and the social cognitive recognition index of the IR group also decreased significantly ( t=2.097, P<0.05). MCC950 treatment reversed the above changes (short-term and long-term new and old thing recognition test: t=5.860, 4.598, P<0.05; new and old position recognition test: t=3.040, P<0.05; social cognition test: t=4.021, P<0.01). The expression of NLRP3, Caspase-1, IL-1 β and IL-18 in mice hippocampus of the IR group was significantly higher than that of the control group ( t=2.699, 8.515, 3.340, 3.950, P<0.05). Compared with NS mice, radiation significantly increased the expressions of Bax, Caspase-3 and PARP1 in hippocampus ( t=3.887, 2.742, 3.287, P<0.05), while MCC950 significantly decreased the expressions of Bax, Caspase-3 and PARP1( t=2.852, 4.090, 9.614, P<0.05). Conclusions:NLRP3 inflammasome inhibitor MCC950 could alleviate radiation-induced cognitive impairment, which may be due to the inhibition of hippocampal inflammatory and neuronal death.
10.MRI diagnosis of gouty arthritis of knee
Shishi LUO ; Zhenping WANG ; Feng CHEN ; Jianjun LI
The Journal of Practical Medicine 2018;34(4):645-648
Objective To explore the imaging features of MRI in the patients with gouty arthritis of knee and the diagnostic value.Methods The MR imaging and clinical date of 31 knees in 22 patients with gouty arthri-tis of the knee confirmed by pathology were retrospectively analyzed. Results All of the 31 knees showed synovial thickness,21 knees showed hydrarthrosis.29 knees had the gouty tophus which located at the patella bursa,patel-lar fat pad,joint cavity,intercondylar fossa,femoral condyle or surrounding,patella or before,and tibial platform or before.Tophi showed hypointensity on T1WI,showed isointensity,slight hyperintensity,and hypo-/slight hyper-intensity on T2WI.Conclusion MRI is very effective image examination method of diagnosis the gout arthritis of the knee,MRI can clearly show synovial thickeness,hydrarthrosis and soft tissue swelling,sensitively observe the bone erosion and the gouty tophi.


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