1.Solitary Skull Langerhans Cell Histiocytosis Presenting With a Pus Draining Fistula: An Unusual Presentation and Review of Literature
Hafiza Hifza BASHIR ; Hafiza Fatima AZIZ ; Faizan SAEED ; Muhammad Ehsan BARI ; Nasir UDDIN
Brain Tumor Research and Treatment 2024;12(2):109-114
		                        		
		                        			
		                        			 Langerhans cell histiocytosis (LCH) is a rare condition in adults, especially when it is limited to a single area of the skull, known as solitary calvarial involvement. In this case report, we present a unique instance of LCH affecting the parietal bone with a pus-draining fistula. This is a rare and unusual presentation at this location, which has been scarcely reported in medical literature. A 30-year-old woman with no prior comorbidity presented with complaints of headache that persisted for a year. She also had swelling on her scalp and a yellowish discharge for 3 weeks, but no neurological problems were observed. Radiology revealed thinning of the calvaria, with ragged margins along the inner table, multiple focal erosions, and involvement of overlying soft tissue and bony sequestrum. The patient underwent biparietal craniotomy and excision of the lesion. The histopathology report showed LCH. After 8 months of follow-up, there was no recurrence. The management of solitary calvarial involvement by LCH with masquerading presentation as a scalp infection can be achieved through complete excision of the lesions, resulting in a favorable outcome. 
		                        		
		                        		
		                        		
		                        	
2.Evaluation of type 2 diabetes risk variants (alleles) in the Pashtun ethnic population of Pakistan
Asif Jan ; Muhammad Saeed ; Zakiullah ; Rani Akbar ; Hamayun Khan
Journal of the ASEAN Federation of Endocrine Societies 2023;38(S1):48-54
		                        		
		                        			Objective:
		                        			To evaluate the Type 2 Diabetes (T2D) risk variants in the Pashtun ethnic population of Khyber Pakhtunkhwa using nascent whole-exome sequencing (WES) to better understand the pathogenesis of this complex polygenic disorder.
		                        		
		                        			Methodology:
		                        			A total of 100 confirmed patients with T2D of Pashtun ethnicity were included in the study, DNA was extracted from whole blood samples, and paired-end libraries were prepared using the Illumina Nextera XT DNA library kit carefully following the manufacturer’s instructions. Illumina HiSeq 2000 was used to obtain sequences of the prepared libraries followed by bioinformatics data analysis.
		                        		
		                        			Results:
		                        			A total of n=11 pathogenic/likely pathogenic variants were reported in the CAP10, PAX4, IRS-2, NEUROD1, CDKL1 and WFS1. Among the reported variants CAP10/rs55878652 (c.1990-7T>C; p.Leu446Pro) and CAP10/rs2975766 (c.1996A>G; p.Ile666Val) identified were novel, and have not yet been reported for any disease in the database. The variants CAP10/rs7607759 (c.1510A>G, p.Thr504Ala), PAX4/rs712701 (c.962A>C; p.His321Pro), PAX4/ rs772936097 (c.748-3delT; p.Arg325Trp), IRS-2/rs1805097 (c.3170G>A; p.Gly1057Asp), NEUROD1/rs1801262 (c.133A>G; p.Thr45Ala), CDKL1/rs77152992 (c.1226C>T; p.Pro409Leu), WFS1/rs1801212 (c.997G>A; p.Val333Ile), WFS1/rs1801208 (c.1367G>A; p.Arg456His), and WFS1/rs734312 (c.1832G>A; p.Arg611His) are previously identified in other ethnic populations. Our study reconfirms the associations of these variants with T2D in the Pakistani Pashtun population.
		                        		
		                        			Conclusion
		                        			In-silico analysis of exome sequencing data suggests a statistically substantial association of all (n=11)
identified variants with T2D in the Pashtun ethnic population. This study may serve as a foundation for performing
future molecular studies aimed at unraveling T2D associated genes.
		                        		
		                        		
		                        		
		                        			type 2 diabetes
		                        			;
		                        		
		                        			 bioinformatics
		                        			;
		                        		
		                        			 whole exome sequencing
		                        			
		                        		
		                        	
3.Pyridoxine Refractory Sideroblastic Anemia: Diagnosis and Misdiagnosis
Muhammad Matloob ALAM ; Abdulrhman ALATHAIBI ; Ruwayd Adel ATTAR ; Muhammad KASHIF ; Hamdan Saeed AL-GHAMDI ; Sultan Abdulaziz ALHARTHI ; Abdulmohsen BOKHARY ; Muteb ALTHOMALI
Clinical Pediatric Hematology-Oncology 2022;29(2):65-69
		                        		
		                        			
		                        			 We report the case of a 7-year-old girl who was originally diagnosed at the age of 6 months with transfusion-dependent red cell aplasia based on a combination of severe anemia, reticulocytopenia and bone marrow findings. Since early infancy due to severe microcytic/hypochromic anemia she received multiple packed RBCs transfusions. She subsequently developed hepatomegaly, hypothyroidism, diabetes, liver cirrhosis and latterly, a severe cardiomyopathy due to significant iron overload refractory to regular chelating agents. Genetic study was offered, confirmed the presence of SLC25A38 gene mutation and her diagnosis was revised to pyridoxine refractory sideroblastic anemia (PRSA). It is a non-syndromic, autosomal recessive disorder, characterized by severe microcytic anemia since infancy and increased serum ferritin, which is not responsive to pyridoxine. Since the clinical course of this disorder is very similar to that of thalassemia major and other red cell aplasia. Prompt recognition and initiation of appropriate treatment are important to reduce the development of secondary disease complications due to iron overload. Given the potential for misdiagnosis and delay in the recognition of sideroblastic anemia, a careful bone marrow examination and genetic study should be included while investigating children with unexplained anemia. 
		                        		
		                        		
		                        		
		                        	
4.Machine learning empowered COVID-19 patient monitoring using non-contact sensing:An extensive review
Saeed UMER ; Shah Yaseen SYED ; Ahmad JAWAD ; Imran Ali MUHAMMAD ; H.Abbasi QAMMER ; Shah Aziz SYED
Journal of Pharmaceutical Analysis 2022;12(2):193-204
		                        		
		                        			
		                        			The severe acute respiratory syndrome coronavirus 2(SARS-CoV-2),which caused the coronavirus disease 2019(COVID-19)pandemic,has affected more than 400 million people worldwide.With the recent rise of new Delta and Omicron variants,the efficacy of the vaccines has become an important question.The goal of various studies has been to limit the spread of the virus by utilizing wireless sensing technologies to prevent human-to-human interactions,particularly for healthcare workers.In this paper,we discuss the current literature on invasive/contact and non-invasive/non-contact technologies(including Wi-Fi,radar,and software-defined radio)that have been effectively used to detect,diagnose,and monitor human activities and COVID-19 related symptoms,such as irregular respiration.In addition,we focused on cutting-edge machine learning algorithms(such as generative adversarial networks,random forest,multilayer perceptron,support vector machine,extremely randomized trees,and k-nearest neighbors)and their essential role in intelligent healthcare systems.Furthermore,this study highlights the limitations related to non-invasive techniques and prospective research directions.
		                        		
		                        		
		                        		
		                        	
5.Clinicohematological parameters and outcomes in a cohort of chronic lymphocytic leukemia patients with Deletion 17p from Pakistan.
Rafia MAHMOOD ; Saleem Ahmed KHAN ; Chaudhry ALTAF ; Hamid Saeed MALIK ; Muhammad Tahir KHADIM
Blood Research 2018;53(4):276-280
		                        		
		                        			
		                        			BACKGROUND: Chronic lymphocytic leukemia (CLL) exhibits profound heterogeneity in its clinical course. Its clinicohematological and cytogenetic features play a significant role in determining the clinical course and in predicting the treatment response and prognosis. In this context, 17p deletion is known to predict a poor prognosis, as these cases are refractory to conventional therapy. This study aimed to evaluate the clinicohematological characteristics, outcomes, and prognostic factors among CLL patients with and without del 17p in Pakistan. METHODS: This prospective observational study was conducted at the Department of Haematology, Armed Forces Institute of Pathology (Rawalpindi, Pakistan) between January 2013 and December 2017. Patients were diagnosed based on the International Workshop on Chronic Lymphocytic Leukaemia IWCLL criteria, their clinicohematological parameters were recorded, and cytogenetic analyses were performed. The time from diagnosis to treatment and the 2-year overall survival rate were also evaluated. RESULTS: We evaluated 130 CLL cases, including 24 patients (18.5%) with del 17p, who included 18 men (75%) and 6 women (25%). The median age was 68 years. Binet stage C was detected at the presentation in 16 patients (67%). Treatment was administered to 14 patients (70%) at a median interval of 11 months (range, 0–28 mo) after diagnosis. The overall response rate was 64.3%, the median event-free survival was 9 months (range, 1–23 mo), and the 2-year overall survival rate was 65%. CONCLUSION: Del 17p is relatively common in Pakistan, and patients harboring this deletion had poor treatment response and survival outcomes.
		                        		
		                        		
		                        		
		                        			Arm
		                        			;
		                        		
		                        			Cohort Studies*
		                        			;
		                        		
		                        			Cytogenetic Analysis
		                        			;
		                        		
		                        			Cytogenetics
		                        			;
		                        		
		                        			Diagnosis
		                        			;
		                        		
		                        			Disease-Free Survival
		                        			;
		                        		
		                        			Education
		                        			;
		                        		
		                        			Female
		                        			;
		                        		
		                        			Humans
		                        			;
		                        		
		                        			In Situ Hybridization, Fluorescence
		                        			;
		                        		
		                        			Leukemia, Lymphocytic, Chronic, B-Cell*
		                        			;
		                        		
		                        			Male
		                        			;
		                        		
		                        			Observational Study
		                        			;
		                        		
		                        			Pakistan*
		                        			;
		                        		
		                        			Pathology
		                        			;
		                        		
		                        			Population Characteristics
		                        			;
		                        		
		                        			Prognosis
		                        			;
		                        		
		                        			Prospective Studies
		                        			;
		                        		
		                        			Survival Rate
		                        			
		                        		
		                        	
6.One-stage Hip Reconstruction for Developmental Hip Dysplasia in Children over 8 Years of Age
Irfan QADIR ; Saeed AHMAD ; Atiq Uz ZAMAN ; Chirag Muhammad KHAN ; Shahzad AHMAD ; Amer AZIZ
Hip & Pelvis 2018;30(4):260-268
		                        		
		                        			
		                        			PURPOSE: This study was performed to assess the clinical and radiological outcomes following one-stage hip reconstruction, consisting of open reduction femoral shortening and pelvic osteotomy, for neglected developmental dislocation of the hip (DDH). MATERIALS AND METHODS: This is a retrospective analysis of 77 hips in 65 patients (46 females and 19 males; 12 had bilateral dislocations), operated at a Ghurki Trust Teaching Hospital in Pakistan between 2013 and 2015. The average age at surgery was 11.02±3.43 years. According to the Tönnis classification, there were 10, 14, 22, and 31 patients in grades 1, 2, 3, and 4, respectively. The pelvic procedure utilized in this study was triple osteotomy (47 hips) followed by double and Salter osteotomy (18 and 12 hips, respectively). Postoperative evaluations were conducted using the modified MacKay's scoring system (functional outcomes) and Severin's scoring method (radiological assessment). RESULTS: Postoperatively, there were 38 (49.4%), 19 (24.7%), 14 (18.2%), and 6 (7.8%) hips in Severin grade I, II, III and IV, respectively. According to the modified McKay criteria, there were 22 hips (28.6%) in excellent condition, 44 (57.1%) in good condition, 9 (11.7%) in fair condition and 2 (2.6%) in poor condition. Both patients with poor outcomes had an unstable, painful hip with evidence of avascular necrosis of the femoral head. CONCLUSION: Based on the results presented here, we recommend the single stage procedure of open reduction, femoral shortening and pelvic osteotomy for treatment of DDH in older children with good to excellent functional and radiological outcomes.
		                        		
		                        		
		                        		
		                        			Child
		                        			;
		                        		
		                        			Classification
		                        			;
		                        		
		                        			Dislocations
		                        			;
		                        		
		                        			Female
		                        			;
		                        		
		                        			Head
		                        			;
		                        		
		                        			Hip Dislocation
		                        			;
		                        		
		                        			Hip
		                        			;
		                        		
		                        			Hospitals, Teaching
		                        			;
		                        		
		                        			Humans
		                        			;
		                        		
		                        			Male
		                        			;
		                        		
		                        			Necrosis
		                        			;
		                        		
		                        			Osteotomy
		                        			;
		                        		
		                        			Pakistan
		                        			;
		                        		
		                        			Research Design
		                        			;
		                        		
		                        			Retrospective Studies
		                        			
		                        		
		                        	
7.Aberrant Promoter Methylation at CpG Cytosines Induce the Upregulation of the E2F5 Gene in Breast Cancer.
Arshad ALI ; Farman ULLAH ; Irum Sabir ALI ; Ahmad FARAZ ; Mumtaz KHAN ; Syed Tahir Ali SHAH ; Nawab ALI ; Muhammad SAEED
Journal of Breast Cancer 2016;19(2):133-141
		                        		
		                        			
		                        			PURPOSE: The promoter methylation status of cell cycle regulatory genes plays a crucial role in the regulation of the eukaryotic cell cycle. CpG cytosines are actively subjected to methylation during tumorigenesis, resulting in gain/loss of function. E2F5 gene has growth repressive activities; various studies suggest its involvement in tumorigenesis. This study aims to investigate the epigenetic regulation of E2F5 in breast cancer to better understand tumor biology. METHODS: The promoter methylation status of 50 breast tumor tissues and adjacent normal control tissues was analyzed. mRNA expression was determined using SYBR® green quantitative polymerase chain reaction (PCR), and methylation-specific PCR was performed for bisulfite-modified genomic DNA using E2F5-specific primers to assess promoter methylation. Data was statistically analyzed. RESULTS: Significant (p<0.001) upregulation was observed in E2F5 expression among tumor tissues, relative to the control group. These samples were hypo-methylated at the E2F5 promoter region in the tumor tissues, compared to the control. Change in the methylation status (Δmeth) was significantly lower (p=0.022) in the tumor samples, indicating possible involvement in tumorigenesis. Patients at the postmenopausal stage showed higher methylation (75%) than those at the premenopausal stage (23.1%). Interestingly, methylation levels gradually increased from the early to the advanced stages of the disease (p<0.001), which suggests a putative role of E2F5 methylation in disease progression that can significantly modulate tumor biology at more advanced stage and at postmenopausal age (Pearson's r=0.99 and 0.86, respectively). Among tissues with different histological status, methylation frequency was higher in invasive lobular carcinoma (80.0%), followed by invasive ductal carcinoma (46.7%) and ductal carcinoma in situ (20.0%). CONCLUSION: Methylation is an important epigenetic factor that might be involved in the upregulation of E2F5 gene in tumor tissues, which can be used as a prognostic marker for breast cancer.
		                        		
		                        		
		                        		
		                        			Biology
		                        			;
		                        		
		                        			Breast Neoplasms*
		                        			;
		                        		
		                        			Breast*
		                        			;
		                        		
		                        			Carcinogenesis
		                        			;
		                        		
		                        			Carcinoma, Ductal
		                        			;
		                        		
		                        			Carcinoma, Intraductal, Noninfiltrating
		                        			;
		                        		
		                        			Carcinoma, Lobular
		                        			;
		                        		
		                        			Cell Cycle
		                        			;
		                        		
		                        			Disease Progression
		                        			;
		                        		
		                        			DNA
		                        			;
		                        		
		                        			E2F5 Transcription Factor
		                        			;
		                        		
		                        			Epigenomics
		                        			;
		                        		
		                        			Eukaryotic Cells
		                        			;
		                        		
		                        			Genes, Regulator
		                        			;
		                        		
		                        			Humans
		                        			;
		                        		
		                        			Methylation*
		                        			;
		                        		
		                        			Polymerase Chain Reaction
		                        			;
		                        		
		                        			Promoter Regions, Genetic
		                        			;
		                        		
		                        			RNA, Messenger
		                        			;
		                        		
		                        			Up-Regulation*
		                        			
		                        		
		                        	
8.Assessment of biochemical and antioxidative status in patients suffering from dengue fever.
Mahmood RASOOL ; Arif MALIK ; Khalid Mahmud KHAN ; Muhammad Saeed QURESHI ; Beenish SHABBIR ; Sara ZAHID ; Muhammad ASIF ; Abdul MANAN ; Sana RASHID ; Saima Rubab KHAN ; Hafiz Muhammad ARSALAN ; Rabail ALAM ; Mahwish AROOJ ; Mahmood Husain QAZI ; Adeel Gulzar Ahmed CHAUDHARY ; Adel Mohammed ABUZENADAH ; Mohammed Hussain AL-QAHTANI ; Sajjad KARIM
Journal of Huazhong University of Science and Technology (Medical Sciences) 2015;35(3):411-418
		                        		
		                        			
		                        			A multi-centred study was designed to collect dengue epidemiologic data from government and registered private hospitals/clinics and maintained archive of frozen specimens in bio-bank to be used for future dengue epidemic control program, and assess the epidemiology of dengue fever (DF) by evaluating biochemical and oxidative status of patients. ELISA IgM antibodies test was done to confirm DF. From August 2010 to December 2011, 101 confirmed blood samples of DF patients referred to pathology lab of Jinnah Hospital Lahore were subjected to the epidemiologic assessment by evaluating the biochemical and physiological indices and alterations of circulating antioxidants. Clinical features of DF patients and effect of fever on blood components and serum proteins of liver were recorded. The hospital stay in DF, dengue hemorrhagic fever (DHF) and dengue shock syndrome (DSS) showed significant difference. Significant increases in serum alanine amino transferase (ALT) (P=0.000), aspartate amino transferase (AST) (P=0.000), alkaline phosphatase (ALP) (P=0.000), malondialdehyde (MDA) along with significant decreases in total protein (TP) (P=0.000), reduced glutathione (GSH) (P=0.000), superoxide dismutase (SOD), catalase (CAT) (P=0.000), and sialic acid contents (P=0.016) were observed. A positive correlation existed between bound sialic acid levels, liver enzymes and circulating antioxidants (r=0.656, P=0.016). In the present study, alterations of circulating antioxidants in DF suggest that DF might be a metabolic response to an acute, self-limiting tropical viral infection, and a consequence of the viral inflammatory process.
		                        		
		                        		
		                        		
		                        			Adult
		                        			;
		                        		
		                        			Antioxidants
		                        			;
		                        		
		                        			metabolism
		                        			;
		                        		
		                        			Biomarkers
		                        			;
		                        		
		                        			blood
		                        			;
		                        		
		                        			China
		                        			;
		                        		
		                        			Dengue
		                        			;
		                        		
		                        			classification
		                        			;
		                        		
		                        			diagnosis
		                        			;
		                        		
		                        			metabolism
		                        			;
		                        		
		                        			Diagnosis, Differential
		                        			;
		                        		
		                        			Female
		                        			;
		                        		
		                        			Humans
		                        			;
		                        		
		                        			Immunoglobulin M
		                        			;
		                        		
		                        			metabolism
		                        			;
		                        		
		                        			Male
		                        			;
		                        		
		                        			Middle Aged
		                        			;
		                        		
		                        			Young Adult
		                        			
		                        		
		                        	
9.Intercomparison of environmental gamma doses measured with A NaI (Tl) survey meter and thermoluminescent dosimeters (TLDs) in the Poonch division of Azad Kashmir, Pakistan.
Muhammad RAFIQUE ; Kimberlee J KEARFOTT ; Khalil AHMAD ; Jabeen AKHTER ; Abdul Razzaq KHAN ; Raja Azhar SAEED ; Saeed Ur RAHMAN ; Matiullah ; Muhammad Usman RAJPUT
Biomedical and Environmental Sciences 2014;27(12):969-972
		                        		
		                        			
		                        			This study presents the intercomparison of the outdoor environmental gamma dose rates measured using a NaI (Tl) based survey meter along with thermoluminescent dosimeters (TLDs) and estimation of excess lifetime cancer risk (ELCR), for the inhabitants of Poonch division of the Azad Kashmir, Pakistan. CaF2: Dy (TLD-200) card dosimeters were installed at height of 1 m from ground at fifteen different locations covering the entire Poonch division comprising of three districts. During three distinct two month time periods within the six month study period, all the installed dosimeters were exposed to outdoor environmental gamma radiations, retrieved and read out at Radiation Dosimetry Laboratory, Health Physics Division, PINSTECH laboratory, Islamabad. The ambient outdoor gamma dose rate measurements were also taken with NaI (Tl) based portable radiometric instrument at 1 m above the ground. To estimate the annual gamma doses, NaI (Tl) based survey data were used for one complete year following the deployment of the dosimeters. The mean annual gamma dose rates measured by TLDs and survey meter were found as 1.47±0.10 and 0.862±0.003 mGy/y respectively. Taking into account a 29% outdoor occupancy factor, the annual average effective dose rate for individuals was estimated as 0.298±0.04 and 0.175±0.03 mSv/y by TLDs and survey meter, respectively. For outdoor exposure, the ELCR was calculated from the TLD and survey meter measurements. The environmental outdoor average annual effective dose obtained in present study are less than the estimated world average terrestrial and cosmic gamma ray dose rate of 0.9 mSv/y reported in UNSCEAR 2000. The possible origins of gamma doses in the area and incompatibilities of results obtained from the two different measurement techniques are also discussed.
		                        		
		                        		
		                        		
		                        			Gamma Rays
		                        			;
		                        		
		                        			adverse effects
		                        			;
		                        		
		                        			Humans
		                        			;
		                        		
		                        			Neoplasms
		                        			;
		                        		
		                        			etiology
		                        			;
		                        		
		                        			Pakistan
		                        			;
		                        		
		                        			Radiation Monitoring
		                        			;
		                        		
		                        			instrumentation
		                        			
		                        		
		                        	
10.Antipyretic and anticonvulsant activity of n-hexane fraction of Viola betonicifolia.
Naveed MUHAMMAD ; Muhammad SAEED ; Haroon KHAN ; Naila RAZIQ ; Syed Muhammad Ashhad HALIMI ; Muzaffer ABASS
Asian Pacific Journal of Tropical Biomedicine 2013;3(4):280-283
OBJECTIVETo investigate the antipyretic and anticonvulsant activities of n-hexane fraction of Viola betonicifolia (V. betonicifolia).
METHODSThe antipyretic effect was scrutinized using brewer's yeast induced pyrexia and anticonvlsion effect was tested using pentylenetetrazol and strychnine induced convulsion in mice.
RESULTSN-hexane fraction of V. betonicifolia demonstrated highly significant antipyretic activity during various assessment times (1-5 h) when challenged in yeast induced pyrexia test. The effect was in a dose dependent manner with maximum attenuation (82.50%) observed at 300 mg/kg i.p. When tested in pentylenetetrazol induced convulsion test, the 1st stage (Ear and facial twitching) and 2nd stage (Convulsive wave through the body) was 100% protected during 24 h at all the test doses (300, 400 and 500 mg/kg i.p.), while the latency time of remaining stages was significantly increased. The maximum effect was observed by n-hexane fraction of V. betonicifolia at 400 and 500 mg/kg i.p., as the latency time for generalized clonic-tonic seizure (5th stage) was increased up to 25.34 min. However, n-hexane fraction of V. betonicifolia had no protection in strychnine induced convulsion test.
CONCLUSIONSIn conclusion, phytopharmacological studies provide scientific foundation to the folk uses of the plant in the treatment of pyrexia and neurological disorders.
Animals ; Anticonvulsants ; administration & dosage ; chemistry ; pharmacology ; Antipyretics ; administration & dosage ; chemistry ; pharmacology ; Disease Models, Animal ; Female ; Fever ; drug therapy ; etiology ; Hexanes ; chemistry ; Male ; Mice ; Plant Extracts ; administration & dosage ; chemistry ; pharmacology ; Seizures ; chemically induced ; drug therapy ; Viola ; chemistry
            

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