1.Detection of Pathogenic Leptospira in Rats and Phylogenetic Analysis Using Outer Membrane Lipoprotein Lipl32 Gene at Two Major Public Markets
Steffi Julan Wan ; Nurshahira Sulaiman ; Nurul Farhana Zulkifli ; Vasantha Kumari Neela ; Hui Yee Chee ; Siti Norbaya Masri ; Nurul Huda Mohamad Ikbal ; Subha Bhassu ; Hasmahzaiti Omar ; Mazen M. Jamil Al-Obaidi ; Mohd Nasir Mohd Desa
Malaysian Journal of Medicine and Health Sciences 2022;18(No.2):1-5
Introduction: Limited studies have been documented on the presence of pathogenic Leptospira in public markets
serving the community in sub-districts of Selangor. The aim of this study was to detect the presence of pathogenic
Leptospira in rats using a gene encoding an outer membrane lipoprotein LipL32. Methods: Polymerase chain reaction (PCR) was performed using LipL32 primers on sixty kidney samples of rats trapped at two locations of study;
Pasar Borong Selangor in Seri Kembangan and Pasar Basah Bandar Baru Bangi in Bangi. Results: Out of 60 samples
analysed, 36.7% were positive for the presence of LipL32. All positive samples highly matched (>94%) nucleotide
sequence for LipL32 of pathogenic Leptospira and related to the pathogens through phylogenetic analysis. Conclusion: The detection of LipL32 indicates the potential presence of pathogenic Leptospira species at public markets.
Although only 60 rats were successfully trapped, the rats are mobile and might further transmit the pathogenic organisms to other areas.
2.Oral Presentation – Clinical and Translational Research
Choon Hoong Chung ; Yee Lynn Soh ; Thinaesh Manoharan ; Arwind Raj ; Dulmini Perera ; Htoo Htoo Kyaw Soe ; Nan Nitra Than ; Lilija Bancevica ; Žanna Kovalova ; Dzintars Ozols ; Ksenija Soldatenkova ; Lim Pyae Ying ; Tay Siow Phing ; Wong Jin Shyan ; Andrew Steven Sinsoon ; Nursabrina Alya Ricky Ramsis ; Nina Azwina Kimri ; Henry Rantai Gudum ; Man Le Ng ; Sze Er Lim ; Hui Yu Kim ; Yee Wan Lee ; Soo Kun Lim ; Sharven Raj ; Mohd Nasir Mohd Desa ; Nurul Syazrah Anuar ; Nurshahira Sulaiman ; Hui Chin Ting ; Zhi Ling Loo ; Choey Yee Lew ; Alfand Marl F Dy Closas ; Tzi Shin Toh ; Jia Wei Hor ; Yi Wen Tay ; Jia Lun Lim ; Lu Yian Tan ; Jie Ping Schee ; Lei Cheng Lit ; Ai Huey Tan ; Shen Yang Lim ; Zhu Shi Wong ; Nur Raziana binti Rozi ; Soo Kun Lim
International e-Journal of Science, Medicine and Education 2022;16(Suppl1):7-14
3.Distribution of virulence genes and the molecular epidemiology of Streptococcus pyogenes clinical isolates by emm and multilocus sequence typing methods
Siti Nur Adila Hamzah ; Mohd Nasir Mohd Desa ; Azmiza Syawani Jasn ; Niazlin Mohd Taib ; Siti Norbaya Masri ; Rukman Awang Hamat
The Medical Journal of Malaysia 2021;76(2):164-170
Background: Streptococcus pyogenes has a variety of
virulence factors and the predominant invasive strains differ
according to specific emm types and geographical
orientation. Although emm typing is commonly used as the
gold standard method for the molecular characterisation,
multilocus sequence typing (MLST) has become an
important tool for comparing the genetic profiles globally.
This study aimed to screen selected virulence genes from
invasive and non-invasive clinical samples and to
characterise the molecular epidemiology by emm typing and
MLST methods.
Materials and Methods: A total of 42 S. pyogenes isolates
from invasive and non-invasive samples collected from two
different tertiary hospitals were investigated for the
distribution of virulence factors and their molecular
epidemiology by emm and multilocus sequence typing
methods. Detection of five virulence genes (speA, speB,
speJ, ssa and sdaB) was performed using multiplex
polymerase chain reaction (PCR) using the standard primers
and established protocol. Phylogenetic tree branches were
constructed from sequence analysis utilised by neighbour
joining method generated from seven housekeeping genes
using MEGA X software.
Results: Multiplex PCR analysis revealed that sdaB/speF
(78.6%) and speB (61.9%) were the predominant virulence
genes. Regardless of the type of invasiveness, diverse
distribution of emm types/subtypes was noted which
comprised of 27 different emm types/subtypes. The
predominant emm types/subtypes were emm63 and emm18
with each gene accounted for 11.8% whereas 12% for each
gene was noted for emm28, emm97.4 and emm91. The MLST
revealed that the main sequence type (ST) in invasive
samples was ST402 (17.7%) while ST473 and ST318 (12% for
each ST) were the major types in non-invasive samples. Out
of 18 virulotypes, Virulotype A (five genes, 55.6%) and
Virulotype B (two genes, 27.8%) were the major virulotypes
found in this study. Phylogenetic analysis indicated the
presence of seven different clusters of S. pyogenes.
Interestingly, Cluster VI showed that selected emm/ST types
such as emm71/ST318 (n=2), emm70.1/ST318 (n=1),
emm44/ST31 (n=1) and emm18/ST442 (n=1) have clustered
within a common group (Virulotype A) for both hospitals
studied.
Conclusion: The present study showed that group A
streptococcci (GAS) are genetically diverse and possess
virulence genes regardless of their invasiveness. Majority of
the GAS exhibited no restricted pattern of virulotypes except
for a few distinct clusters. Therefore, it can be concluded
that virulotyping is partially useful for characterising a
heterogeneous population of GAS in hospitals.
4.Proteomic profiling of Acinetobacter baumannii ATCC 19606 and Malaysian isolated clinical strain AB-13 using 2-dimensional gel electrophoresis
Hing Jian Mea ; Kayatri Jeejothinathan ; Mohd Nasir Mohd Desa ; Navindrakumari Palanisamy ; Priya Madhavan ; Voon Chen Yong ; Eng Hwa Wong
Malaysian Journal of Microbiology 2021;17(5):505-513
Aims:
Acinetobacter baumannii has been identified as one of the six most pathogenic bacteria that is the cause of most hospital bacterial infections according to Infectious Disease Society of America (IDSA). These nosocomial pathogens are notorious worldwide due to its ability in causing lethal infections among immunocompromised patients and its resistance to many strong antibiotics. This study aims to compare the expressed proteins of two A. baumannii strain, ATCC 19606 and a pathogenic clinically isolated strain known as AB-13.
Methodology and results:
AB-13 clinically strain was isolated from the lower respiratory tract of a patient with pneumonia. In this study, the proteomic profile of both ATCC 19606 and AB-13 are produced using 2-dimensional gel electrophoresis. The total protein contents were extracted, quantified and separated using 2-DE with a pH range of 4-7 to acquire the proteomic profile for comparison. The final analytical gel was analysed using Delta2D software and among the 324 protein spots successfully resolved, 10 spots exhibited signs of differential expression with 7 spots found to be downregulated and 3 spots upregulated (p< 0.01). These differences could signify the evolution AB-13 has undergone as it acquires traits ultimately aiding in its survivability, antimicrobial resistance and pathogenicity within varied environments especially during infections.
Conclusion, significance and impact of study
These findings support the presence of variation in AB-13 from a proteomic perspective, highlighting the pathogen’s evolution improving survivability and pathogenicity, warranting in-depth exploration towards understanding A. baumannii virulence and pathogenicity.
Acinetobacter baumannii--pathogenicity
;
Two-Dimensional Difference Gel Electrophoresis
;
Proteomics
5.Assessment of Pathogenicity of Community-Acquired MRSA Isolates in Mice-Induced Peritonitis
Nur Izzatie Zulkiflee ; Norhidayah Mat Azis ; Mohd Nasir Mohd Desa ; Norhafizah Mohtarrudin ; Sharifah Sakinah Syed Alwi ; Seri Narti Edayu Sarchio
Malaysian Journal of Medicine and Health Sciences 2021;17(No.3):8-15
Introduction: Methicillin-Resistance Staphylococcus aureus (MRSA) is known as a major nosocomial pathogen in
healthcare. However, it has now spread in the community known as community-acquired MRSA (CA-MRSA). Thus,
the survival and pathogenicity of CA-MRSA isolates were assessed using in vivo peritonitis model with comparison to
ATCC-MRSA. Two CA-MRSA isolates; CA-MRSA1 and CA-MRSA2 that were isolated from healthy population, were
studied and compared. Methods: Mice were assigned into 4 groups and injected intraperitoneally with ATCC-MRSA,
CA-MRSA1 or CA-MRSA2, respectively. Sterile Dulbecco’s Phosphate-Buffered Saline (DPBS) represents negative
control. Mice were observed twice daily, 0-72 hours of post-infection. Any signs of distress were recorded for severity score and survival analyses. Mice were euthanised at 72 hours post-inoculation or by referring to the Peritonitis
Severity Scoring (PSS) system. Organs of interest, peritoneal lavage and abscess were processed for bacterial counts.
Tissue samples were analysed for histopathological scores. Results: All mice inoculated with MRSA showed clear
signs of illness with peritonitis symptoms of p<0.001 and comparable PSS scores were recorded in all infected mice
groups. Intraperitoneal injection of lethal dose of MRSA resulted in significant death of ATCC-MRSA (p<0.05) and
CA-MRSA-infected mice (p<0.01), compared to the un-infected. Bacterial burden was significantly high in all samples harvested from mice challenged with CA-MRSA2 compared to ATCC-MRSA except in abscess and lung. Significant liver necrosis and spleen inflammation were observed in CA-MRSA1, and lung inflammation in ATCC-MRSA-infected mice. Conclusion: Nasal carriage CA-MRSA isolates from a healthy population has the potential to cause
peritonitis with comparable severity as ATCC-MRSA.
6.Multilocus Sequence Typing Analysis of Invasive and Non-Invasive Group B Streptococcus of Hospital Origin in Malaysia
Menagah Ezhumalai ; AbdulRahman Muthanna ; Zarizal Suhail ; Nurul Diana Dzaraly ; Syafinaz Amin-Nordin ; Mohammad Noor Azmai Amal ; Mohd Nasir Mohd Desa
Malaysian Journal of Medical Sciences 2020;27(1):134-138
The aim of this study was to study the genotype of a hospital collection of Group B
Streptococcus (GBS) from invasive and non-invasive sites. Fifty-one pre-characterised human
of GBS were re-identified and further analysed by multilocus sequence typing (MLST) in relation
to previously published serotypes. Fifteen sequence types (ST) were found with ST1 being the
most predominant. ST1 was also associated with majority of the invasive isolates. The genotypic
distribution patterns of GBS in this study were largely in agreement with previous reports from
other countries indicating the tendency of certain genotypes to prevail in human infection settings.
7.The PUTRA Press-fit System as An Alternative Femoral Fixation Technique for Posterior Cruciate Ligament Reconstruction – A Technical Note and Outcome Evaluation
Nasir Mohd Nizlan1, Paisal Hussin1, Raymond Yeak Dieu Kiat1, Mohd Zaidi Saleh2, Shahrulazua Ahmad3
Malaysian Journal of Medicine and Health Sciences 2019;15(3):148-152
Abstract
We describe our technique of single-bundle PCL reconstruction using a bony femoral press-fit system. 9 patients underwent PCL reconstruction using our pressfit system. The surgical procedure is described in detail. Post-operatively, 5 patients were available for assessment and review. Four patients gave a final Lysholm score of 92 – 100%. Three patients gave a Hospital for Special Surgery (HSS) score of excellent, one fair and one poor. Two patients gave a reduced Tegner activity score post-operatively while the other three gave a similar score post-operatively. Assessment using KT-1000 revealed four patients with a side-to-side difference of less than 3 mm (average side-to-side difference, 1.87 mm), while one patient exhibited a side-to-side difference of 5.8 mm. We believe that our technique enhances tunnel healing through usage of a bone-plug fixation and provides a cheap alternative for graft fixation on the femoral side in PCL reconstruction.
8.Genotypic and phenotypic characterization of methicillin resistance determinants and β-lactamase in Staphylococcus species
Abdul Rahim Abdul Rachman ; Norhidayah Mat Azis ; Pung Hui Ping ; Zarizal Suhaili ; Syafinaz Amin Nordin ; Zulkefley Othman ; Mohd Nasir Mohd Desa
Malaysian Journal of Microbiology 2017;13(4):308-317
Aims: To characterize the genotypic distribution of mec complex, bla complex, methicillin-resistance level (cefoxitinMIC)
and β-lactamase activity in carriage methicillin-resistant Staphylococcus species for a potential correlation.
Methodology and results: Biochemical test, 30 µg cefoxitin diffusion disc test, cefoxitin E-test, mec and bla complexes
distributions, Pbp2a and β-lactamase assays were conducted to characterize phenotypic and genotypic of MRSA and
MRCoNS in our collection. Phylogenetic tree was constructed using MEGA6 software to trace the diversity of blaZ gene
of MRSA and MRCoNS. Sixteen MRSA and nineteen MRCoNS were identified by biochemical tests followed by 30 µg
cefoxitin antibiotic disc susceptibility test and mecA gene screening. Twenty nine isolates carry complete mecA genes
(2.1 kb), incomplete mec regulator (negative or truncated) and positive Pbp2a assay for both MRSA and MRCoNS. Only
MRCoNS SC177 isolate with cefoxitin MIC of 32 µg/mL carries complete mec complex. Thirty-one of thirty-five isolates
carry complete bla complex (blaZ, blaRI, blaI) with 10 MRSA produce strong β-lactamase and cefoxitin MIC of ≥12
µg/mL. Only 4 MRCoNS with cefoxitin MIC of ≤8 µg/mL produce strong β-lactamase. The diversity of blaZ gene was
demonstrated by phylogenetic analysis and unusual amino acid mutation at position 145 for MRSA SA60 isolate may
compromise its β-lactamase activity with low cefoxitin MIC level (2 µg/mL).
Conclusions, significance and impact of the study: Isolates that carry complete complete mecA gene were largely
consistent with the expression of Pbp2a. Nevertheless, there is no clear correlation of mec regulator genes in relation to
cefoxitin-MIC in both methicillin resistant (MR) Isolates that carry Staphylococcus species. On the other hand, various
expression level of β-lactamase may correlate with cefoxitin-MIC level in MRSA as compared to MRCoNS.
9.The emergence of Acinetobacter baumannii ST-6 multidrug resistant: A resilient biofilm producer, Malaysia
Jayakayatri Jeevajothi Nathan ; Mohd Nasir Mohd Desa ; Voon Chen Yong ; Parasakthi Navaratnam ; Navindra Kumari Palanisamy ; Eng Hwa Wong
Malaysian Journal of Microbiology 2016;12(4):265-269
Aims: The aim of this research is to explore the presence of multidrug-resistance (MDR) Acinetobacter baumannii
strains isolated from hospitalized patients in a tertiary-care center, Subang Jaya, Selangor, Malaysia and to compare
their genotypic and phenotypic characteristics.
Methodology and results: Clonal relationships were determined by multilocus sequence typing (MLST) and biofilm
forming ability was evaluated by using 2, 3 - bis (2 - methoxy - 4 - nitro - 5-sulfophenyl) - 5 - [(phenylamino) carbonyl] -
2H-tetrazolium hydroxide (XTT) reduction assay in microplates and Congo red agar method (CRA). Four virulence
genes coding for A. baumannii pilus usher-chaperone assembly protein, csuE gene; outer membrane protein, ompA
gene; biofilm poly-β-1, 6-Nacetylglucosamine (PNAG) synthesis protein, pgaA gene; and acinetobactin-mediated iron
acquisition protein, bauA gene were searched for in a collection of strains. Antimicrobial resistance against 11 antibiotics
were studied by broth microdilution method. Seventeen A. baumannii clinical strains were isolated and MLST showed
that the strains belonged to 5 distinct sequence types (STs), namely, ST-6, ST-265, ST-324, ST-325 and ST-432. Fiftythree
percent of the strains were resistant to 4 or more antibiotics. Twelve strains produced biofilm and out of them, 4
were strong biofilm producer, besides, these strong biofilm producers were MDR strains and belongs to ST-6. In
addition, all strains were ompA positive, biofilm producing strains were csuE and pgaA positive and only strong biofilm
producing strains were bauA positive.
Conclusion, significance and impact study: Our study demonstrates that the ST-6 strains in Malaysia could represent
MDR, capable of forming strong biofilm and possess csuE, ompA, pgaA and bauA genes, virulence characteristics that
probably help the bacteria to persist and cause infection.
Acinetobacter baumannii
10.Prevalence of Escherichia Coli O157:H7 and Enterobacteriaceae on Hands of Workers in Halal Cattle Abattoirs in Peninsular Malaysia
Shamsul Bahri Mohd Tamrin ; Adamu Muhammad Tukur ; Mohd Desa Mohd Nasir ; Khairani-Bejo Siti
Malaysian Journal of Medical Sciences 2016;23(5):65-71
Background: Several occupational diseases of multiple origins are encountered among
abattoir workers. Presence of indicator microorganisms (coliforms) on hands of workers can be
used a gauge for hygienic practices.
Methods: A cross-sectional study was performed to assess the prevalence of E.coli
and enterobacteriaceae among Halal abattoir workers in some government halal abattoirs of
Malaysia. A total of one hundred and sixty-five hand swab samples were collected from workers
of Halal abattoirs in Malaysia. The samples were subjected to microbiological analysis for
characterisation and serotyping.
Results: The results have shown that no Escherichia coli O157:H7 was isolated on
the hands of abattoir workers before and after work. However, a total prevalence of 9.7% was
recorded for all samples during work. For non-O157:H7, total prevalence of 33.3% during work
and 13% after work were obtained. High prevalence was recorded in sample taken during work
from Tampin, Jasin and Kemaman (100% each) while low prevalence where observed in Shah
Alam, Banting and Ipoh (20% each).
Conclusions: Based on the findings the hygienic practices of hand washing among the
workers in few locations was found to be low especially after work.


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