1.Diagnostic performance of a computer-aided system for tuberculosis screening in two Philippine cities.
Gabrielle P. FLORES ; Reiner Lorenzo J. TAMAYO ; Robert Neil F. LEONG ; Christian Sergio M. BIGLAEN ; Kathleen Nicole T. UY ; Renee Rose O. MAGLENTE ; Marlex Jorome M. NUGUID ; Jason V. ALACAP
Acta Medica Philippina 2025;59(2):33-40
BACKGROUND AND OBJECTIVES
The Philippines faces challenges in the screening of tuberculosis (TB), one of them being the shortage in the health workforce who are skilled and allowed to screen TB. Deep learning neural networks (DLNNs) have shown potential in the TB screening process utilizing chest radiographs (CXRs). However, local studies on AIbased TB screening are limited. This study evaluated qXR3.0 technology's diagnostic performance for TB screening in Filipino adults aged 15 and older. Specifically, we evaluated the specificity and sensitivity of qXR3.0 compared to radiologists' impressions and determined whether it meets the World Health Organization (WHO) standards.
METHODSA prospective cohort design was used to perform a study on comparing screening and diagnostic accuracies of qXR3.0 and two radiologist gradings in accordance with the Standards for Reporting Diagnostic Accuracy (STARD). Subjects from two clinics in Metro Manila which had qXR 3.0 seeking consultation at the time of study were invited to participate to have CXRs and sputum collected. Radiologists' and qXR3.0 readings and impressions were compared with respect to the reference standard Xpert MTB/RiF assay. Diagnostic accuracy measures were calculated.
RESULTSWith 82 participants, qXR3.0 demonstrated 100% sensitivity and 72.7% specificity with respect to the reference standard. There was a strong agreement between qXR3.0 and radiologists' readings as exhibited by the 0.7895 (between qXR 3.0 and CXRs read by at least one radiologist), 0.9362 (qXR 3.0 and CXRs read by both radiologists), and 0.9403 (qXR 3.0 and CXRs read as not suggestive of TB by at least one radiologist) concordance indices.
CONCLUSIONSqXR3.0 demonstrated high sensitivity to identify presence of TB among patients, and meets the WHO standard of at least 70% specificity for detecting true TB infection. This shows an immense potential for the tool to supplement the shortage of radiologists for TB screening in the country. Future research directions may consider larger sample sizes to confirm these findings and explore the economic value of mainstream adoption of qXR 3.0 for TB screening.
Human ; Tuberculosis ; Diagnostic Imaging ; Deep Learning
2.Clinical, biochemical, and radiologic profiles of Filipino patients with 6-Pyruvoyl-Tetrahydrobiopterin Synthase (6-PTPS) deficiency and their neurodevelopmental outcomes.
Leniza G. DE CASTRO-HAMOY ; Ma. Anna Lourdes A. MORAL ; Loudella V. CALOTES-CASTILLO ; Mary Ann R. ABACAN ; Cynthia P. CORDERO ; Maria Lourdes C. PAGASPAS ; Ebner Bon G. MACEDA ; Sylvia C. ESTRADA ; Mary Anne D. CHIONG
Acta Medica Philippina 2025;59(3):39-44
BACKGROUND
Six-pyruvoyl-tetrahydrobiopterin synthase (6-PTPS) deficiency is an inherited metabolic disorder which results in tetrahydrobiopterin (BH4) deficiency causing hyperphenylalaninemia.
OBJECTIVEThis study aimed to describe the clinical, biochemical, and radiologic profiles, and neurologic and developmental outcomes of patients diagnosed with 6-pyruvoyl tetrahydrobiopterin (PTPS) deficiency through newborn screening and confirmed by BH4 loading test, pterin analysis, and gene sequencing who were following-up with the metabolic team.
METHODSThe research was a single-center descriptive case series study design that was done at the Philippine General Hospital, a tertiary government hospital. The clinical, biochemical, radiologic profiles and neurodevelopmental evaluation of each patient were described.
RESULTSNine patients from 1 year 2 months to 14 years 5 months of age were enrolled in the study. Clinical manifestations before treatment were hypotonia, poor suck, and seizure. The most common clinical manifestation even after treatment initiation was seizure. The mean phenylalanine level on newborn screening was 990.68 umol/L, but after treatment was started, mean levels ranged from 75.69 to 385.09 umol/L. Two of the patients had focal atrophy of the posterior lobe on brain imaging. Pathogenic variants on molecular analysis were all missense, with two predominant variants, c.155A>G and c.58T>C. Eight of the nine patients had varying degrees of developmental delay or intellectual disability, while the remaining patient had signs of a learning disorder.
CONCLUSIONNewborn screening has played a crucial role in the early identification and management of patients with hyperphenylalaninemia due to 6-PTPS deficiency. Confirmation of diagnosis through determination of DHPR activity, urine pterins and/or molecular analysis is necessary for appropriate management. However, despite early initiation of treatment, neurodevelopmental findings of patients with 6-PTPS deficiency were still unsatisfactory.
Human ; Infant: 1-23 Months ; Child Preschool: 2-5 Yrs Old ; Child: 6-12 Yrs Old ; Adolescent: 13-18 Yrs Old ; Learning Disorders ; Brain ; Diagnosis
3.The use of social media for student-led initiatives in undergraduate medical education: A cross-sectional study.
Nina Therese B. CHAN ; Leonard Thomas S. LIM ; Hannah Joyce Y. ABELLA ; Arlyn Jave B. ADLAWON ; Teod Carlo C. CABILI ; Iyanla Gabrielle C. CAPULE ; Gabrielle Rose M. PIMENTEL ; Raul Vicente O. RECTO JR. ; Blesile Suzette S. MANTARING ; Ronnie E. BATICULON
Acta Medica Philippina 2025;59(6):58-70
BACKGROUND AND OBJECTIVES
One of the effects of the COVID-19 pandemic on medical education is an increased awareness and use of social media (SocMed) to facilitate learning. However, literature on the use of SocMed in medical education has focused primarily on educator-led teaching activities. Our study aimed to describe SocMed initiatives that were student-led, particularly for information dissemination and peer collaborative learning, and to elicit perceptions of medical students towards such activities.
METHODSAn online survey on SocMed usage in medical education was sent to all first- and second-year medical students at the University of the Philippines Manila College of Medicine from October to December 2021. The questionnaire collected data on demographics, SocMed habits and preferences, and perceived advantages and disadvantages of SocMed. Descriptive statistics were calculated while the free-text responses were grouped into prominent themes and summarized.
RESULTSWe received a total of 258 responses (71%) out of 361 eligible participants. Overall, 74% found SocMed platforms to be very and extremely helpful; 88% recommended its continued use. The most popular SocMed platforms for different tasks were as follows: Discord for independent study groups and for conducting peer tutoring sessions; Facebook Messenger for reading reminders; Telegram for reading announcements related to academics and administrative requirements, and for accessing material provided by classmates and professors.
CONCLUSIONThe high uptake of SocMed among medical students may be attributed to its accessibility and costefficiency. The use of a particular SocMed platform was dependent on the students’ needs and the platform's features. Students tended to use multiple SocMed platforms that complemented one another. SocMed also had disadvantages, such as the potential to distract from academic work and to become a source of fatigue. Educators must engage with students to understand how SocMed platforms can be integrated into medical education, whether in the physical or virtual learning environment.
Human ; Education, Medical, Undergraduate ; Social Media ; Online Learning ; Education, Distance
4.Empty our cups: A reflection on lifelong learning and impactful research in nursing.
Philippine Journal of Nursing 2025;95(1):94-95
This reflective paper explored the philosophical foundations of lifelong learning and impactful research in the field of nursing. Anchored in personal experience and supported by scholarly literature, it illustrated the transformative power of continuous learning, the cultivation of research competence, and the moral responsibility of contributing meaningfully to society. A nurse researcher's journey is not defined by awards or accomplishment but by an unwavering dedication to knowledge creation, community involvement, and evidence-based practice. The "emptying one's cup" metaphor embodies intellectual humility, a mindset that keeps the mind open to learning, self-improvement, and meaningful service throughout one's career.
Human ; Lifelong Learning ; Education, Continuing ; Nursing Research ; Reflective Practice ; Cognitive Reflection
5.Knowledge Graph Enhanced Transformers for Diagnosis Generation of Chinese Medicine.
Xin-Yu WANG ; Tao YANG ; Xiao-Yuan GAO ; Kong-Fa HU
Chinese journal of integrative medicine 2024;30(3):267-276
Chinese medicine (CM) diagnosis intellectualization is one of the hotspots in the research of CM modernization. The traditional CM intelligent diagnosis models transform the CM diagnosis issues into classification issues, however, it is difficult to solve the problems such as excessive or similar categories. With the development of natural language processing techniques, text generation technique has become increasingly mature. In this study, we aimed to establish the CM diagnosis generation model by transforming the CM diagnosis issues into text generation issues. The semantic context characteristic learning capacity was enhanced referring to Bidirectional Long Short-Term Memory (BILSTM) with Transformer as the backbone network. Meanwhile, the CM diagnosis generation model Knowledge Graph Enhanced Transformer (KGET) was established by introducing the knowledge in medical field to enhance the inferential capability. The KGET model was established based on 566 CM case texts, and was compared with the classic text generation models including Long Short-Term Memory sequence-to-sequence (LSTM-seq2seq), Bidirectional and Auto-Regression Transformer (BART), and Chinese Pre-trained Unbalanced Transformer (CPT), so as to analyze the model manifestations. Finally, the ablation experiments were performed to explore the influence of the optimized part on the KGET model. The results of Bilingual Evaluation Understudy (BLEU), Recall-Oriented Understudy for Gisting Evaluation 1 (ROUGE1), ROUGE2 and Edit distance of KGET model were 45.85, 73.93, 54.59 and 7.12, respectively in this study. Compared with LSTM-seq2seq, BART and CPT models, the KGET model was higher in BLEU, ROUGE1 and ROUGE2 by 6.00-17.09, 1.65-9.39 and 0.51-17.62, respectively, and lower in Edit distance by 0.47-3.21. The ablation experiment results revealed that introduction of BILSTM model and prior knowledge could significantly increase the model performance. Additionally, the manual assessment indicated that the CM diagnosis results of the KGET model used in this study were highly consistent with the practical diagnosis results. In conclusion, text generation technology can be effectively applied to CM diagnostic modeling. It can effectively avoid the problem of poor diagnostic performance caused by excessive and similar categories in traditional CM diagnostic classification models. CM diagnostic text generation technology has broad application prospects in the future.
Humans
;
Medicine, Chinese Traditional
;
Pattern Recognition, Automated
;
Asian People
;
Language
;
Learning
6.Deep learning-based radiomics allows for a more accurate assessment of sarcopenia as a prognostic factor in hepatocellular carcinoma.
Zhikun LIU ; Yichao WU ; Abid Ali KHAN ; L U LUN ; Jianguo WANG ; Jun CHEN ; Ningyang JIA ; Shusen ZHENG ; Xiao XU
Journal of Zhejiang University. Science. B 2024;25(1):83-90
Hepatocellular carcinoma (HCC) is one of the most common malignancies and is a major cause of cancer-related mortalities worldwide (Forner et al., 2018; He et al., 2023). Sarcopenia is a syndrome characterized by an accelerated loss of skeletal muscle (SM) mass that may be age-related or the result of malnutrition in cancer patients (Cruz-Jentoft and Sayer, 2019). Preoperative sarcopenia in HCC patients treated with hepatectomy or liver transplantation is an independent risk factor for poor survival (Voron et al., 2015; van Vugt et al., 2016). Previous studies have used various criteria to define sarcopenia, including muscle area and density. However, the lack of standardized diagnostic methods for sarcopenia limits their clinical use. In 2018, the European Working Group on Sarcopenia in Older People (EWGSOP) renewed a consensus on the definition of sarcopenia: low muscle strength, loss of muscle quantity, and poor physical performance (Cruz-Jentoft et al., 2019). Radiological imaging-based measurement of muscle quantity or mass is most commonly used to evaluate the degree of sarcopenia. The gold standard is to measure the SM and/or psoas muscle (PM) area using abdominal computed tomography (CT) at the third lumbar vertebra (L3), as it is linearly correlated to whole-body SM mass (van Vugt et al., 2016). According to a "North American Expert Opinion Statement on Sarcopenia," SM index (SMI) is the preferred measure of sarcopenia (Carey et al., 2019). The variability between morphometric muscle indexes revealed that they have different clinical relevance and are generally not applicable to broader populations (Esser et al., 2019).
Humans
;
Aged
;
Sarcopenia/diagnostic imaging*
;
Carcinoma, Hepatocellular/diagnostic imaging*
;
Muscle, Skeletal/diagnostic imaging*
;
Deep Learning
;
Prognosis
;
Radiomics
;
Liver Neoplasms/diagnostic imaging*
;
Retrospective Studies
7.Diagnostic performance of a computer-aided system for tuberculosis screening in two Philippine cities
Gabrielle P. Flores ; Reiner Lorenzo J. Tamayo ; Robert Neil F. Leong ; Christian Sergio M. Biglaen ; Kathleen Nicole T. Uy ; Renee Rose O. Maglente ; Marlex Jorome M. Nugui ; Jason V. Alacap
Acta Medica Philippina 2024;58(Early Access 2024):1-8
Background and Objectives:
The Philippines faces challenges in the screening of tuberculosis (TB), one of them being the shortage in the health workforce who are skilled and allowed to screen TB. Deep learning neural networks (DLNNs) have shown potential in the TB screening process utilizing chest radiographs (CXRs). However, local studies on AIbased TB screening are limited. This study evaluated qXR3.0 technology's diagnostic performance for TB screening in Filipino adults aged 15 and older. Specifically, we evaluated the specificity and sensitivity of qXR3.0 compared to radiologists' impressions and determined whether it meets the World Health Organization (WHO) standards.
Methods:
A prospective cohort design was used to perform a study on comparing screening and diagnostic accuracies of qXR3.0 and two radiologist gradings in accordance with the Standards for Reporting Diagnostic Accuracy (STARD). Subjects from two clinics in Metro Manila which had qXR 3.0 seeking consultation at the time of study were invited to participate to have CXRs and sputum collected. Radiologists' and qXR3.0 readings and impressions were compared with respect to the reference standard Xpert MTB/RiF assay. Diagnostic accuracy measures were calculated.
Results:
With 82 participants, qXR3.0 demonstrated 100% sensitivity and 72.7% specificity with respect to the
reference standard. There was a strong agreement between qXR3.0 and radiologists' readings as exhibited by
the 0.7895 (between qXR 3.0 and CXRs read by at least one radiologist), 0.9362 (qXR 3.0 and CXRs read by both
radiologists), and 0.9403 (qXR 3.0 and CXRs read as not suggestive of TB by at least one radiologist) concordance indices.
Conclusions
qXR3.0 demonstrated high sensitivity to identify presence of TB among patients, and meets the WHO standard of at least 70% specificity for detecting true TB infection. This shows an immense potential for the tool to supplement the shortage of radiologists for TB screening in the country. Future research directions may consider larger sample sizes to confirm these findings and explore the economic value of mainstream adoption of qXR 3.0 for TB screening.
Tuberculosis
;
Diagnostic Imaging
;
Deep Learning
8.The aromatic scents of four plants in learning and memory of Drosophila melanogaster
Bryan Paul D. De Galicia ; Paul Mark B. Medina
Acta Medica Philippina 2024;58(3):47-54
Introduction:
Folkloric claims have surrounded essential oils, including their enhancement of learning and memory through inhalational exposure. Few studies in humans have shown a benefit in cognition, albeit incremental. However, this benefit may not be entirely attributable to the essential oil aroma but may be confounded by psychological associations. We investigated rosemary, peppermint, lemon, and coffee aromas in a learning and memory model of Drosophila melanogaster to eliminate this confounder.
Methods:
We screened for concentrations of the four treatments that are non-stimulatory for altered locomotory behavior in the flies. At these concentrations, we determined if they were chemoneutral (i.e., neither chemoattractant nor chemorepellent) to the flies. Learning and memory of the flies exposed to these aromas were determined using an Aversive Phototaxis Suppression (APS) assay.
Results:
The aromas of rosemary, peppermint, and lemon that did not elicit altered mobility in the flies were from dilute essential oil solutions that ranged from 0.2 to 0.5% v/v; whereas for the aroma in coffee, it was at a higher concentration of 7.5% m/v. At these concentrations, the aromas used were found to be chemoneutral towards the flies. We observed no improvement in both learning and memory in the four aromas tested. While a significant reduction (p < 0.05) in learning was observed when flies were treated with the aromas of rosemary, peppermint, and coffee, a significant reduction (p < 0.05) in memory was only observed in the peppermint aroma treatment.
Conclusion
This study demonstrated that in the absence of psychological association, the four aromas do not enhance learning and memory
Drosophila melanogaster
;
Learning
;
Memory
;
Rosmarinus
;
Mentha piperita
;
Citrus
;
Coffea
9.SPECT-MPI for Coronary Artery Disease: A deep learning approach
Vincent Peter C. Magboo ; Ma. Sheila A. Magboo
Acta Medica Philippina 2024;58(8):67-75
Background:
Worldwide, coronary artery disease (CAD) is a leading cause of mortality and morbidity and remains to be a top health priority in many countries. A non-invasive imaging modality for diagnosis of CAD such as single photon emission computed tomography-myocardial perfusion imaging (SPECT-MPI) is usually requested by cardiologists as it displays radiotracer distribution in the heart reflecting myocardial perfusion. The interpretation of SPECT-MPI is done visually by a nuclear medicine physician and is largely dependent on his clinical experience and showing significant inter-observer variability.
Objective:
The aim of the study is to apply a deep learning approach in the classification of SPECT-MPI for perfusion abnormalities using convolutional neural networks (CNN).
Methods:
A publicly available anonymized SPECT-MPI from a machine learning repository (https://www.kaggle.com/ selcankaplan/spect-mpi) was used in this study involving 192 patients who underwent stress-test-rest Tc99m MPI. An exploratory approach of CNN hyperparameter selection to search for optimum neural network model was utilized with particular focus on various dropouts (0.2, 0.5, 0.7), batch sizes (8, 16, 32, 64), and number of dense nodes (32, 64, 128, 256). The base CNN model was also compared with the commonly used pre-trained CNNs in medical images such as VGG16, InceptionV3, DenseNet121 and ResNet50. All simulations experiments were performed in Kaggle using TensorFlow 2.6.0., Keras 2.6.0, and Python language 3.7.10.
Results:
The best performing base CNN model with parameters consisting of 0.7 dropout, batch size 8, and 32 dense nodes generated the highest normalized Matthews Correlation Coefficient at 0.909 and obtained 93.75% accuracy, 96.00% sensitivity, 96.00% precision, and 96.00% F1-score. It also obtained higher classification performance as compared to the pre-trained architectures.
Conclusions
The results suggest that deep learning approaches through the use of CNN models can be deployed by nuclear medicine physicians in their clinical practice to further augment their decision skills in the interpretation of SPECT-MPI tests. These CNN models can also be used as a dependable and valid second opinion that can aid physicians as a decision-support tool as well as serve as teaching or learning materials for the less-experienced physicians particularly those still in their training career. These highlights the clinical utility of deep learning approaches through CNN models in the practice of nuclear cardiology.
Coronary Artery Disease
;
Deep Learning
10.A correlational study between the degree of digital eye strain and total screen time among medical students
Beatriz Renee I. Rivera ; Angelico M. Robles ; Trisha Joy Basille A. Rodriguez ; Emilio Joaquim B. Roxas ; Katrina Margarita H. Saavedra ; Rian Gabrielle A. Sablan ; Hanz Jefry A. Saliendra ; Angelo O. San Jose ; Agnes A. Alba ; Jose Ronilo G. Juangco
Health Sciences Journal 2024;13(2):97-101
INTRODUCTION:
The COVID-19 pandemic has significantly increased reliance on digital devices for education, leading to heightened concerns about digital eye strain (DES) among students. This study aimed to investigate the association between screen time and the degree of DES among first to third-year medical students at a private medical school from August to September 2023.
METHODS:
An analytical cross-sectional design was employed, involving 194 participants who completed a self administered questionnaire, including the Computer Vision Syndrome Questionnaire (CVS-Q). Data were analyzed using descriptive statistics and relative risk calculations.
RESULTS:
The mean daily screen time was 6.94 hours, with 79.38% of participants reporting symptoms of digital eye strain. A significant association was found between screen time and DES, with a positive risk ratio of 1.304 for those spending 4-8 hours on screens compared to those with less than 4 hours.
CONCLUSION
This study highlights the growing prevalence of DES among medical students during the pandemic, emphasizing the need for educational institutions to implement strategies that mitigate screenrelated health risks. Recommendations include awareness programs, ergonomic guidelines and regular eye check-ups to promote ocular health.
Human
;
Students, medical
;
online learning
;
education, distance


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