1.Bacterial profiling of head lice isolated from the Orang Asli: A first report in Malaysia
Abd Majid, M.A. ; Khoo, J.-J. ; Lim, F.-S. ; Khor, C.-S. ; Loong, S.-K. ; Low, V.-L. ; Lee, H.-Y. ; AbuBakar, S.
Tropical Biomedicine 2020;37(No.4):884-895
This study was carried out to determine from bacterial profiling to the bacterial
profiles of head lice among the Orang Asli communities. The head lice were collected from
Orang Asli community volunteers. The surface sterilized head lice pools were subjected to
genomic DNA extraction while next generation sequencing of the 16S rRNA gene was
performed using the Illumina MiSeq platform. Six female and three male head lice identified
as Pediculus humanus capitis were collected. A total of 111 368 number of NGS sequencing
reads were recorded while another 223 bacterial taxa sequences were obtained. Symbiotic
bacteria showed the highest number of reads, with Arsenophonus and Rhodococcus sequences
being the most abundant genera in the female and male samples, respectively. The female
head lice contained a more distinct microbial diversity. Amongst the pathogenic bacterial
species sequences noted were the methicillin-resistant Staphylococcus aureus, Streptobacillus
moniliformis, Haemophilus influenzae, Bordetella pertussis and Acinetobacter baumannii.
The 16S rRNA genome sequencing revealed a number of rare and pathogenic bacterial
species within the head lice of the Orang Asli. The socio-economic practices of the community
which involved forest foraging and hunting, and their poor living conditions potentially
facilitated the transmission of zoonotic bacterial pathogens, including those found within the
head lice. Hence, there is the possibility that the head lice could serve as vectors for the
transmission of pathogenic bacteria. This study highlighted the diverse microbial community
found within the head lice’s gut of the Orang Asli, with the detection of multiple rare and
pathogenic bacteria capable of causing severe infections.
2.DPHL:A DIA Pan-human Protein Mass Spectrometry Library for Robust Biomarker Discovery
Zhu TIANSHENG ; Zhu YI ; Xuan YUE ; Gao HUANHUAN ; Cai XUE ; Piersma R. SANDER ; Pham V. THANG ; Schelfhorst TIM ; Haas R.G.D. RICHARD ; Bijnsdorp V. IRENE ; Sun RUI ; Yue LIANG ; Ruan GUAN ; Zhang QIUSHI ; Hu MO ; Zhou YUE ; Winan J. Van Houdt ; Tessa Y.S. Le Large ; Cloos JACQUELINE ; Wojtuszkiewicz ANNA ; Koppers-Lalic DANIJELA ; B(o)ttger FRANZISKA ; Scheepbouwer CHANTAL ; Brakenhoff H. RUUD ; Geert J.L.H. van Leenders ; Ijzermans N.M. JAN ; Martens W.M. JOHN ; Steenbergen D.M. RENSKE ; Grieken C. NICOLE ; Selvarajan SATHIYAMOORTHY ; Mantoo SANGEETA ; Lee S. SZE ; Yeow J.Y. SERENE ; Alkaff M.F. SYED ; Xiang NAN ; Sun YAOTING ; Yi XIAO ; Dai SHAOZHENG ; Liu WEI ; Lu TIAN ; Wu ZHICHENG ; Liang XIAO ; Wang MAN ; Shao YINGKUAN ; Zheng XI ; Xu KAILUN ; Yang QIN ; Meng YIFAN ; Lu CONG ; Zhu JIANG ; Zheng JIN'E ; Wang BO ; Lou SAI ; Dai YIBEI ; Xu CHAO ; Yu CHENHUAN ; Ying HUAZHONG ; Lim K. TONY ; Wu JIANMIN ; Gao XIAOFEI ; Luan ZHONGZHI ; Teng XIAODONG ; Wu PENG ; Huang SHI'ANG ; Tao ZHIHUA ; Iyer G. NARAYANAN ; Zhou SHUIGENG ; Shao WENGUANG ; Lam HENRY ; Ma DING ; Ji JIAFU ; Kon L. OI ; Zheng SHU ; Aebersold RUEDI ; Jimenez R. CONNIE ; Guo TIANNAN
Genomics, Proteomics & Bioinformatics 2020;18(2):104-119
To address the increasing need for detecting and validating protein biomarkers in clinical specimens, mass spectrometry (MS)-based targeted proteomic techniques, including the selected reaction monitoring (SRM), parallel reaction monitoring (PRM), and massively parallel data-independent acquisition (DIA), have been developed. For optimal performance, they require the fragment ion spectra of targeted peptides as prior knowledge. In this report, we describe a MS pipe-line and spectral resource to support targeted proteomics studies for human tissue samples. To build the spectral resource, we integrated common open-source MS computational tools to assemble a freely accessible computational workflow based on Docker. We then applied the workflow to gen-erate DPHL, a comprehensive DIA pan-human library, from 1096 data-dependent acquisition (DDA) MS raw files for 16 types of cancer samples. This extensive spectral resource was then applied to a proteomic study of 17 prostate cancer (PCa) patients. Thereafter, PRM validation was applied to a larger study of 57 PCa patients and the differential expression of three proteins in prostate tumor was validated. As a second application, the DPHL spectral resource was applied to a study consisting of plasma samples from 19 diffuse large B cell lymphoma (DLBCL) patients and 18 healthy control subjects. Differentially expressed proteins between DLBCL patients and healthy control subjects were detected by DIA-MS and confirmed by PRM. These data demonstrate that the DPHL supports DIA and PRM MS pipelines for robust protein biomarker discovery. DPHL is freely accessible at https://www.iprox.org/page/project.html?id=IPX0001400000.
3.Best practices on immunomodulators and biologic agents for ulcerative colitis and Crohn's disease in Asia
Choon Jin OOI ; Ida HILMI ; Rupa BANERJEE ; Sai Wei CHUAH ; Siew Chien NG ; Shu Chen WEI ; Govind K MAKHARIA ; Pises PISESPONGSA ; Min Hu CHEN ; Zhi Hua RAN ; Byong Duk YE ; Dong Il PARK ; Khoon Lin LING ; David ONG ; Vineet AHUJA ; Khean Lee GOH ; Jose SOLLANO ; Wee Chian LIM ; Wai Keung LEUNG ; Raja Affendi Raja ALI ; Deng Chyang WU ; Evan ONG ; Nazri MUSTAFFA ; Julajak LIMSRIVILAI ; Tadakazu HISAMATSU ; Suk Kyun YANG ; Qin OUYANG ; Richard GEARY ; Janaka H DE SILVA ; Rungsun RERKNIMITR ; Marcellus SIMADIBRATA ; Murdani ABDULLAH ; Rupert WL LEONG ;
Intestinal Research 2019;17(3):285-310
The Asia-Pacific Working Group on inflammatory bowel disease (IBD) was established in Cebu, Philippines, under the auspices of the Asian Pacific Association of Gastroenterology with the goal of improving IBD care in Asia. This consensus is carried out in collaboration with Asian Organization for Crohn's and Colitis. With biologic agents and biosimilars becoming more established, it is necessary to conduct a review on existing literature and establish a consensus on when and how to introduce biologic agents and biosimilars in the conjunction with conventional treatments for ulcerative colitis (UC) and Crohn's disease (CD) in Asia. These statements also address how pharmacogenetics influence the treatments of UC and CD and provide guidance on response monitoring and strategies to restore loss of response. Finally, the review includes statements on how to manage treatment alongside possible hepatitis B and tuberculosis infections, both common in Asia. These statements have been prepared and voted upon by members of IBD workgroup employing the modified Delphi process. These statements do not intend to be all-encompassing and future revisions are likely as new data continue to emerge.
Adalimumab
;
Asia
;
Asian Continental Ancestry Group
;
Biological Factors
;
Biosimilar Pharmaceuticals
;
Colitis
;
Colitis, Ulcerative
;
Consensus
;
Cooperative Behavior
;
Crohn Disease
;
Gastroenterology
;
Hepatitis B
;
Humans
;
Immunologic Factors
;
Inflammatory Bowel Diseases
;
Infliximab
;
Pharmacogenetics
;
Philippines
;
Practice Guidelines as Topic
;
Tuberculosis
;
Ulcer
4.An Efficient and Reliable Assay for Investigating the Effects of Hypoxia/Anoxia on Drosophila.
Yiling XIA ; Wangchao XU ; Shiquan MENG ; Nastasia K H LIM ; Wenan WANG ; Fu-De HUANG
Neuroscience Bulletin 2018;34(2):397-402
Stroke is a leading cause of death worldwide. Up to one thousand potential drugs or interventions have been developed to treat stroke, out of which ~160 have gone on to clinical trials. However, none of them has been successful. New insights into the molecular and cellular mechanisms of ischemia-induced injury are needed for discovering new therapeutic targets. Recently, Drosophila has been used to uncover new hypoxia-related genes. In this study, we describe an efficient and reliable assay with a sophisticated apparatus for studying the effects of oxygen deprivation on flies. Using this assay, wild-type flies were exposed to an anoxic environment for varying lengths of time, then the cumulative death rate and mobility recovery were systematically analyzed. We found that anoxia for over one hour caused lethality. The cumulative death rate on day 5 after anoxia was linearly and positively correlated with the duration of anoxia, and reached 50% when the duration was 2.5 h-3 h. We also found that the mobility recovery in normoxia was slow, as the climbing ability remained largely unchanged 4 h-6 h after 2.5-h of anoxia. We suggest that 2.5 h-3 h of anoxia and 4 h-6 h of recovery before mobility analysis are appropriate for future use of the anoxia assay.
Animals
;
Behavior, Animal
;
Disease Models, Animal
;
Drosophila melanogaster
;
Hypoxia
5.Ministry of Health Clinical Practice Guidelines: Chronic Obstructive Pulmonary Disease.
Tow Keang LIM ; Cynthia B CHEE ; Patsy CHOW ; Gerald Sw CHUA ; Soo Kiang ENG ; Soon Keng GOH ; Kwee Keng KNG ; Wai Hing LIM ; Tze Pin NG ; Thun How ONG ; S T Angeline SEAH ; Hsien Yung TAN ; K H TEE ; Vimal PALANICHAMY ; Meredith T YEUNG
Singapore medical journal 2018;59(2):76-86
The Ministry of Health (MOH) has updated the Clinical Practice Guidelines on Chronic Obstructive Pulmonary Disease (COPD) to provide doctors and patients in Singapore with evidence-based treatment for COPD. This article reproduces the introduction and executive summary (with recommendations from the guidelines) from the MOH Clinical Practice Guidelines on COPD, for the information of SMJ readers. Chapters and page numbers mentioned in the reproduced extract refer to the full text of the guidelines, which are available from the Ministry of Health website: https://www.moh.gov.sg/content/moh_web/healthprofessionalsportal/doctors/guidelines/cpg_medical.html. The recommendations should be used with reference to the full text of the guidelines. Following this article are multiple choice questions based on the full text of the guidelines.
Adult
;
Aged
;
Evidence-Based Medicine
;
Humans
;
Middle Aged
;
Palliative Care
;
Prevalence
;
Pulmonary Disease, Chronic Obstructive
;
diagnosis
;
therapy
;
Pulmonary Medicine
;
standards
;
Quality Improvement
;
Radiography, Thoracic
;
Risk Factors
;
Singapore
;
Steroids
;
therapeutic use
6.Comparison between elderly inpatient fallers with and without dementia.
Si Ching LIM ; Kaysar MAMUN ; Jim K H LIM
Singapore medical journal 2014;55(2):67-71
INTRODUCTIONThis study aimed to examine the various factors associated with inpatient falls among patients with and without dementia in a hospital setting.
METHODSThis was a retrospective one-year study using data collected from Singapore General Hospital's electronic reporting system for inpatient falls.
RESULTSIn the study period, 298 patients aged ≥ 65 years fell during their hospital stay. The majority of the patients (n = 248) did not have dementia. In our study, fallers with dementia were more likely to use ambulatory aids, be visually impaired and have urinary incontinence. More patients with dementia than those without had a history of previous falls, and were placed on fall precaution with restricted freedom of movement, which at times, included restraints. However, the difference between patients who were put on restraints and those who were allowed to move freely was not statistically significant. The majority of falls in both groups occurred at the bedside. We found that fallers without dementia were more likely to fall during the morning shift, whereas fallers with dementia were more likely to fall during the night shift. Fallers with dementia were more likely to be confused at the time of the fall.
CONCLUSIONIn our study, we found that fallers with dementia were more likely to have visual impairment, have urinary incontinence, use walking aids, and to be confused and physically restrained at the time of the fall. The fallers without dementia in our study may have undiagnosed dementia.
Accidental Falls ; statistics & numerical data ; Aged ; Aged, 80 and over ; Dementia ; complications ; Female ; Geriatrics ; Hospitals ; Humans ; Inpatients ; Length of Stay ; Male ; Retrospective Studies ; Time Factors ; Urinary Incontinence ; complications ; Vision Disorders ; complications
7.Sinonasal natural killer/T-cell lymphoma presenting as pyrexia of unknown origin with nasal symptoms.
Betsy K H SOON ; Xin-Rong LIM ; Deborah H L NG ; Ming-Yann LIM
Singapore medical journal 2014;55(7):e109-11
A 68-year-old Chinese man presented with an eight-month history of pyrexia of unknown origin and chronic sinusitis despite multiple courses of antibiotics. He underwent extensive investigations, including workups for infections, chronic granulomatous diseases and malignancy. Nasal biopsies were performed twice under local anaesthesia, but did not show any evidence of malignancy. Eventually, the patient was diagnosed with natural killer (NK)/T-cell lymphoma, nasal variant, based on histopathological findings from harvested deep tissue obtained via functional endoscopic sinus surgery. This study highlights that, for patients presenting with pyrexia of unknown origin and nasal symptoms, NK/T-cell lymphoma must be considered as a differential diagnosis. Generous amounts of tissue should be harvested under general anaesthesia rather than limited tissue under local anaesthesia, in order to facilitate and ensure a definitive diagnosis.
Aged
;
Anti-Bacterial Agents
;
chemistry
;
Biopsy
;
China
;
Humans
;
Lymphoma, Extranodal NK-T-Cell
;
diagnosis
;
diagnostic imaging
;
pathology
;
Male
;
Nasal Cavity
;
pathology
;
Nose Neoplasms
;
complications
;
diagnosis
;
radiotherapy
;
Prognosis
;
Radiography
;
Radiotherapy
;
Sinusitis
;
complications
;
diagnosis
;
Treatment Outcome
8.Neurophobia in medical students and junior doctors--blame the GIK.
Kai-qian KAM ; Glorijoy S E TAN ; Kevin TAN ; Erle C H LIM ; Nien Yue KOH ; Nigel C K TAN
Annals of the Academy of Medicine, Singapore 2013;42(11):559-566
INTRODUCTIONWe aimed to create a definition of neurophobia, and determine its prevalence and educational risk factors amongst medical students and junior doctors in Singapore.
MATERIALS AND METHODSWe surveyed medical students and junior doctors in a general hospital using electronic and paper questionnaires. We asked about knowledge, interest, perceived difficulty in neurology, and confidence in managing neurology patients compared to 7 other internal medicine specialties; quality and quantity of undergraduate and postgraduate neuroscience teaching, clinical neurology exposure, and postgraduate qualifications. Neurophobia was defined as ≤4 composite score of difficulty and confidence with neurology.
RESULTSOne hundred and fifty-eight medical students (63.5%) and 131 junior doctors (73.2%) responded to the questionnaire. Neurophobia prevalence was 47.5% in medical students, highest amongst all medical subspecialties, and 36.6% in junior doctors. Multivariate analysis revealed that for medical students, female gender (OR 3.0, 95% CI, 1.3 to 6.7), low interest (OR 2.5, 95% CI, 1.0 to 6.2), low knowledge (OR 10.1, 95% CI, 4.5 to 22.8), and lack of clinical teaching by a neurologist (OR 2.8, 95% CI, 1.2 to 6.6) independently increased the risk of neurophobia. For doctors, low interest (OR 3.0, 95% CI, 1.3 to 7.0) and low knowledge (OR 2.7, 95% CI, 1.2 to 6.2) independently increased the risk of neurophobia, and female gender was of borderline significance (OR 2.0, 95% CI, 0.9 to 4.6).
CONCLUSIONNeurophobia is highly prevalent amongst Singapore medical students and junior doctors. Low interest and knowledge are independent risk factors shared by both groups; female gender may also be a shared risk factor. The mnemonic GIK (Gender, Interest, Knowledge) identifies the risk factors to mitigate when planning teaching strategies to reduce neurophobia.
Attitude of Health Personnel ; Humans ; Medical Staff, Hospital ; Neurology ; Physicians ; Students, Medical ; Surveys and Questionnaires
9.The use of n-butyl-2 cyanoacrylate as an embolic agent in the minimally invasive treatment of renal arteriovenous malformations.
Pei Ghim POH ; Bien Soo TAN ; Seng Choe THAM ; Kiang Hiong TAY ; Austin M M HTOO ; Michael B K LIN ; Christopher W S CHENG ; Tsung Wen CHONG ; Keong Tat FOO ; Winston E H LIM
Annals of the Academy of Medicine, Singapore 2013;42(4):207-209
Adult
;
Arteriovenous Malformations
;
therapy
;
Embolization, Therapeutic
;
methods
;
Enbucrilate
;
therapeutic use
;
Female
;
Humans
;
Kidney
;
blood supply
;
Male
;
Middle Aged
10.Physical Activity and Sedentary Behaviour among Adolescents in Petaling District, Selangor, Malaysia
CC Kee ; K H Lim ; MG Sumarni ; MN Ismail ; BK Poh ; NM Amal
Malaysian Journal of Medicine and Health Sciences 2011;7(1):83-94
Physical inactivity is strongly associated with obesity and an increased risk of cardiovascular disease in
children and adolescents. A cross-sectional study using multistage random sampling was conducted to
determine associations between demographic characteristics, sedentary behaviours and physical activity
among adolescents. Data were collected from 785 (414 males and 371 females) Form four students
attending 15 schools in Petaling District, Selangor using an adapted self-administered questionnaire.
Results showed that more females (50.1%) were physically inactive compared to males (39.6%) (Adjusted
odds ratio (OR): 1.55, 95% confidence interval (CI): 1.12-2.15). Physically inactive adolescents were
less likely to participate in intramural/house league sports (OR: 1.71, 95% CI: 1.19-2.44), school team
sports (OR: 1.45, 95% CI: 1.03-2.04) and individual physical activities outside school (OR: 1.53, 95%
CI: 1.11-2.12) compared to their physically active counterparts. Physically inactive adolescents were
also less engaged in sedentary activities, such as television watching (OR: 0.69, 95% CI: 0.50-0.94),
playing computer/video game (OR: 0.44, 95% CI: 0.28-0.72), talking on the telephone/mobile phone
text messaging (OR: 0.47, 95% CI: 0.32-0.69) and reading (OR:0.45, 95% CI: 0.24-0.86) compared
to those who were physically active. In this study, physical activity coexists with sedentary behaviour
in adolescents. Sedentary activities may not necessarily displace physical activity among youth. In
addition, these data suggest that promoting organised sports in school and outside the school among
youths may be a potential strategy for increasing physical activity in this population.


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