1.Therapeutics in paediatric genetic diseases: Current and future landscape.
Ai Ling KOH ; Saumya Shekhar JAMUAR
Singapore medical journal 2023;64(1):7-16
There are more than 7,000 paediatric genetic diseases (PGDs) but less than 5% have treatment options. Treatment strategies targeting different levels of the biological process of the disease have led to optimal health outcomes in a subset of patients with PGDs, where treatment is available. In the past 3 decades, there has been rapid advancement in the development of novel therapies, including gene therapy, for many PGDs. The therapeutic success of treatment relies heavily on knowledge of the genetic basis and the disease mechanism. Specifically, gene therapy has been shown to be effective in various clinical trials, and indeed, these trials have led to regulatory approvals, paving the way for gene therapies for other types of PGDs. In this review, we provide an overview of the treatment strategies and focus on some of the recent advancements in therapeutics for PGDs.
Child
;
Humans
;
Genetic Diseases, Inborn/therapy*
;
Genetic Therapy
3.Clinical characterization and genetic testing for a patient with creatine deficiency syndrome 1.
Shu XYU ; Chen XU ; Yuan LYU ; Chuang LI ; Caixia LIU
Chinese Journal of Medical Genetics 2022;39(2):213-215
OBJECTIVE:
To explore the genetic basis for a child affected with cerebral creatine deficiency syndrome 1 (CCDS1).
METHODS:
High-throughput sequencing was carried out to screen pathogenic variant associated with the clinical phenotype of the proband. The candidate variant was verified by Sanger sequencing.
RESULTS:
High-throughput sequencing revealed that the proband has carried heterozygous c.327delG variant of the SLC6A8 gene, which was verified by Sanger sequencing.Neither parent was found to carry the same variant.
CONCLUSION
The de novo heterozygous c.327delG variant of the SLC6A8 gene probably underlay the CCDS1 in this child.
Brain Diseases, Metabolic, Inborn/genetics*
;
Creatine
;
Genetic Testing
;
Heterozygote
;
Humans
;
Mental Retardation, X-Linked
;
Mutation
4.Tandem mass spectrometry and genetic variant analysis of four neonates with very long chain acyl-coenzyme A dehydrogenase deficiency.
Dongyang HONG ; Yanyun WANG ; Yun SUN ; Dingyuan MA ; Zhilei ZHANG ; Wei CHENG ; Tao JIANG
Chinese Journal of Medical Genetics 2022;39(3):276-281
OBJECTIVE:
To analyze the clinical features and genetic variants in four neonates with very long chain acyl-coenzyme A dehydrogenase (VLCAD) deficiency.
METHODS:
Neonates with a tetradecenoylcarnitine (C14:1) concentration at above 0.4 μmol/L in newborn screening were recalled for re-testing. Four neonates were diagnosed with VLCAD deficiency by MS-MS and genetic testing, and their clinical features and genotypes were analyzed.
RESULTS:
All cases had elevated blood C14:1, and the values of first recalls were all lower than the initial test. In 2 cases, the C14:1 had dropped to the normal range. 1 case has remained at above 1 μmol/L after the reduction, and the remainder one case was slightly decreased. In total eight variants of the ADACVL genes were detected among the four neonates, which included 5 missense variants and 3 novel variants (p.Met344Val, p.Ala416Val, c.1077+6T>A). No neonate showed salient clinical manifestations.
CONCLUSION
Above findings have enriched the spectrum of ADACVL gene mutations and provided a valuable reference for the screening and diagnosis of VLCAD deficiency.
Acyl-CoA Dehydrogenase/genetics*
;
Acyl-CoA Dehydrogenase, Long-Chain
;
Congenital Bone Marrow Failure Syndromes
;
Genetic Testing
;
Humans
;
Infant, Newborn
;
Lipid Metabolism, Inborn Errors
;
Mitochondrial Diseases
;
Muscular Diseases
;
Tandem Mass Spectrometry
5.Molecular polymorphism Analysis on CD36 Deficiency among Platelet Blood Donors in Shenzhen.
Yun-Ping XU ; Ze-Tao SUN ; Long PENG ; Shuang LIANG ; Fan WU ; Zhen LI ; Da-Cheng LI
Journal of Experimental Hematology 2022;30(3):884-889
OBJECTIVE:
To analyze the molecular polymorphisms of CD36 among 58 blood donors with CD36 deficiency and compare with CD36 positive controls.
METHODS:
A total of 58 donors with CD36 deficiency during a screening conducted in the laboratory from September 2019 to December 2020 were enrolled as the test group, including 39 males and 19 females, while 120 platelet donors with CD36 positive were randomly selected as the controls, including 76 males and 44 females. All of the subjects were Han nationality. The PCR-SBT method was used to detect coding region of CD36 gene, and molecular mutations were compared with those CD36 positive controls.
RESULTS:
Among the 58 donors with CD36 deficiency, mutations appears in 32 individuals. The detection rate for type I was 71.43% (5/7), and type II was 51.92% (27/52), while among the 120 controls, mutations appears in 12 donors (10%). In the CD36 antigen-deficient donors, 16 variations were found, in which 329-330 del AC with the highest frequency accounted for 20.69%, followed by 1228-1239 del ATTGTGCCTATT(15.52%) and 1156 C>T(10.34%). Two variations, 198-205 del GATCTTTG and 220 C>T, led to premature termination of translation; four mutations, 329-330 del AC, 560 ins T, 1011-1049 39bp dupl and 1343-1344 ins TCTT, caused translation frame shift; 1228-1239 del ATTGTGCCTATT led to deletion of four amino acids (Ile-Val-Pro-Ile) at sites 410-413 of the peptide chain. The 1140 T>A and 1275 G>A were synonymous mutations, and the other 7 mutations resulted in the substitution of single nucleotide. The platelet expression in the donors of CD36 positive with 329-330 del AC or 1228-1239 del ATTGTGCCTATT mutation (heterozygote) was lower than those CD36 positive individuals without mutations (homozygote).
CONCLUSION
Multiple gene mutations in the CD36 coding region may cause CD36 deficiency, and the heterozygous individuals with mutations may lead to CD36 antigen reduction or deletion. Mutation is not detected in 44.83% of CD36 deficient individuals, there may be some other reasons for the CD36 antigen deficiency.
Blood Donors
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Blood Platelet Disorders/metabolism*
;
Blood Platelets/metabolism*
;
CD36 Antigens/metabolism*
;
Female
;
Genetic Diseases, Inborn
;
Humans
;
Male
6.Clinical and genetic analysis of a child with transcobalamin II deficiency.
Chunlan YANG ; Xiaodong WANG ; Chunjing WANG ; Xiaoling ZHANG ; Yue LI ; Yue YU ; Sixi LIU
Chinese Journal of Medical Genetics 2021;38(10):993-996
OBJECTIVE:
To investigate the genetic etiology, clinical diagnosis and treatment of a child with pancytopenia, failure to thrive and pulmonary infection.
METHODS:
Peripheral blood samples of the child and her parents were collected. Genomic DNA was extracted. Genetic variants associated with hematological diseases were detected by high-throughput sequencing.
RESULTS:
Three variants of TCN2 gene were found, one of which located in exon 5 upstream(c.581-8A>T), the parents has carried this variant; one in exon 6 (c.924_927del), the variant was originated from the mother; one in exon 7 (c.973C>T), the variant has ocurred de novo. The variants pathogenic analysis combined with clinical manifestation, pancytopenia, the increase in methylmalonic acid level and increased homocysteine, the child was diagnosed with transcobalaminIIdeficiency. The patient presented with respiratory infection, which was confirmed to be pneumocystosis by lung radioscopy and pathogenic high-throughput sequencing of broncho-alveolar lavage fluid. The patient presented with acute respiratory distress syndrome during the treatment with intramuscular injection of vitamin B
CONCLUSION
We reported a case of Chinese child with TCNII deficiency due to novel gene variant, and analyzed the pathogenicity of the three variants. The treatment of TCNII deficiency with cobalamin should be individualized.
Amino Acid Metabolism, Inborn Errors
;
Child
;
Female
;
Genetic Testing
;
Humans
;
Rare Diseases
;
Transcobalamins/genetics*
;
Vitamin B 12
7.Application value of whole exome sequencing in critically ill neonates with inherited diseases.
Yu-Lan CHEN ; You-Xiang ZHANG ; Xiu-Fang YANG ; Jian CHEN ; Xiao-Tong LI ; Mu-Hua HUANG ; Jing-Wei RUAN ; Qiang LIN
Chinese Journal of Contemporary Pediatrics 2020;22(12):1261-1266
OBJECTIVE:
To study the application value of whole exome sequencing (WES) in critically ill neonates with inherited diseases.
METHODS:
A total of 66 critically ill neonates with suspected inherited diseases or unclear clinical diagnosis who were admitted to the neonatal intensive care unit were enrolled as subjects. The clinical data of the neonates were collected, and venous blood samples were collected from the neonates and their parents for WES. The clinical manifestations of the neonates were observed to search for related pathogenic gene mutations.
RESULTS:
Among the 66 critically ill neonates with suspected inherited diseases or unclear clinical diagnosis (34 boys and 32 girls), 14 (21%) were found to have gene mutations by WES. One neonate had no gene mutation detected by WES but was highly suspected of pigment incontinence based on clinical manifestations, and multiplex ligation-dependent probe amplification detected a heterozygous deletion mutation in exons 4-10 of the IKBKG gene. Among the 15 neonates with gene mutations, 10 (67%) had pathogenic gene mutation, 1 (7%) was suspected of pathogenic gene mutation, and 4 (27%) had gene mutations with unknown significance. Among the 15 neonates, 13 underwent chromosome examination, and only 1 neonate was found to have chromosome abnormality.
CONCLUSIONS
Chromosome examination cannot be used as a diagnostic method for inherited diseases, and WES detection technology is an important tool to find inherited diseases in critically ill neonates with suspected inherited diseases or unclear clinical diagnosis; however WES technology has some limitation and it is thus necessary to combine with other sequencing methods to achieve an early diagnosis.
Critical Illness
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Exons
;
Female
;
Genetic Diseases, Inborn/genetics*
;
Heterozygote
;
Humans
;
I-kappa B Kinase/genetics*
;
Infant, Newborn
;
Male
;
Mutation
;
Whole Exome Sequencing
8.Two Novel Mutations at the CD36 Gene Splicing Sites and Their Molecular Basis for the CD36 Deficiency.
Li-Lan LI ; Jie-Run CHEN ; Li-Hong JIANG ; Zhou-Lin ZHONG ; Hai-Yan LI ; Yan ZHOU ; Fang LU ; Guo-Guang WU
Journal of Experimental Hematology 2020;28(6):2056-2065
OBJECTIVE:
To study two novel CD36 gene mutations at the CD36 splicing sites found in Guangxi population, as well as the molecular basis and population incidence of them.
METHODS:
DNA sequencing and cDNA clonal sequencing were used to detect CD36 exon sequence and the protein coding region sequence of CD36 mRNA for 2 CD36 deficient individuals (HHC and WGM) found in Guangxi population. Eukaryotic expression cell lines were established for the discovery of CD36 mRNA abnormal transcripts and Western blot assay was used to verify the effect of abnormal CD36 mRNA transcripts on CD36 expression. A DNA PCR-SSP genotyping method was established for the two CD36 novel mutations, and the population distribution was investigated among 110 CD36 deficient individuals in Guangxi region and 296 random individuals in Guangxi population.
RESULTS:
Novel mutation of c.430 -1G>C was found at the CD36 splicing site in HHC and WGM individuals, and novel mutation of c.1006 +2T>G at the CD36 splicing site was also found in the WGM individual. CD36 cDNA clonal sequencing showed that CD36 c.430 -1G>C could lead to the production of the two CD36 mRNA transcript variants: c.429_430ins[430-17_430-2;C](p.Ala144fsTer1) and c.430_609del(p.Ala144_Pro203del)(GenBank:HM 217023.1); and CD36 c.1006 +2T>G could lead to the production of CD36 mRNA transcript variant of c.819_1006 del (p.Ser274GlufsTer16) (GenBank: HM217025.1). It was verified that all the three transcript variants could lead to CD36 deficiency by establishment of eukaryotic expression cell lines and Western blot assay. A study of the population incidence of two novel CD36 splicing site mutations found showed that in 110 CD36 deficient individuals and in 296 random individuals in Guangxi region, the mutation rate of CD36 c.430 -1G>C was 10.91% (12/110) and 1.35% (4/296), respectively, while CD36 c.1006 +2T>G was 2.73% (3/110) and 0 (0/296), respectively.
CONCLUSION
This study identifies two novel CD36 mutations at CD36 splicing site, and preliminary clarified their molecular basis for the CD36 deficiency and the distribution characteristics in Guangxi population as well. It provides an experimental and theoretical basis for studying the molecular mechanism and characteristics of CD36 deficiency in Chinese population.
Blood Platelet Disorders
;
China
;
Genetic Diseases, Inborn
;
Humans
;
Mutation
;
RNA Splicing
9.Expert consensus on the follow-up of newborn screening for neonatal genetic and metabolic diseases.
COMMITTEE FOR PROFICIENCY TESTING NEONATAL GENETIC METABOLIC DISEASE SCREENING CENTER NATIONAL HEALTH COMMISSION OF CHINA ; Mingcai OU ; Jianhui JIANG ; Zhiguo WANG
Chinese Journal of Medical Genetics 2020;37(4):367-372
Follow-up is a crucial step for the screening of neonatal genetic and metabolic diseases, which can directly influence the detection, diagnosis, efficacy of treatment, as well as the quality of neonatal screening. In view of the lack of follow-up, full understanding, and inconsistent requirement between various agencies and personnel in China, there is an urgent need for standardization. The Committee for Proficiency Testing of the Neonatal Genetic Metabolic Disease Screening Center of the National Health Committee of China has organized the writing of expert consensus for follow-up of neonatal genetic and metabolic disease screening after thorough discussion, so as to guide the follow-up work and improve its quality.
China
;
Consensus
;
Follow-Up Studies
;
Genetic Diseases, Inborn
;
diagnosis
;
Humans
;
Infant, Newborn
;
Metabolic Diseases
;
diagnosis
;
genetics
;
Neonatal Screening
10.Consensus on the application of clinical whole genome sequencing in the diagnosis of genetic diseases.
Society of Medical Geneticists, Chinese Medical Doctor Association ; Subspecialty Group of Endocrindogic, Hereditary and Metabolic Diseases, the Society of Pedratrics, Chinese Medical Association ; Clinical Genetics Group, Adolescent Medicine Committee, Chinese Medical Doctor Association ; Molecular Diagnosis Society, Shanghai Medical Association
Chinese Journal of Pediatrics 2019;57(6):419-423

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