1.Research progress of phase separation of intracellular biological macromolecules.
Hui LI ; Qingxi LIU ; Xinjun LI ; Qiang JIAO ; Wenjian MA
Chinese Journal of Biotechnology 2020;36(7):1261-1268
The phenomenon of phase separation of intracellular biological macromolecules is an emerging research field that has received great attention in recent years. As an aggregation and compartment mechanism of cell biochemical reactions, it widely exists in nature and participates in important physiological processes such as gene transcription and regulation, as well as influences organism's response to external stimuli. Disequilibrium of phase separation may lead to the occurrence of some major diseases. Researchers in cross-cutting fields are trying to examine dementia and other related diseases from a new perspective of phase separation, exploring its molecular mechanism and the potential possibility of intervention and treatment. This review intends to introduce the latest research progress in this field, summarize the major research directions, biochemical basis, its relationship with disease occurrence, and giving a future perspective of key problems to focus on.
Animals
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Chemistry Techniques, Analytical
;
trends
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Cytoplasm
;
chemistry
;
metabolism
;
Humans
;
Macromolecular Substances
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isolation & purification
;
Research
;
trends
2.The 40-91 aa sequence of porcine epidemic diarrhea virus ORF3 protein is the key structural domain controlling its location in cytoplasm.
Bingqing CHEN ; Mei SHEN ; Fusheng SI ; ShiJuan DONG ; RuiSong YU ; ChunFang XIE ; Zhen LI
Chinese Journal of Biotechnology 2020;36(6):1113-1125
ORF3 protein, the single accessory protein encoded by porcine epidemic diarrhea virus (PEDV), is related to viral pathogenicity. In order to determine the cytoplasmic location signal of PEDV ORF3, we constructed a series of recombinant plasmids carrying full-length or truncated segments of PEDV DR13 ORF3 protein. When the acquired plasmids were transfected into Vero cells, expression and distribution of the EGFP-fused full-length ORF3 protein and its truncated forms in the cells were observed by laser confocal microscopy. The results showed that ORF3 protein or their truncated forms containing 40-91 aa segment including two transmembrane domains were localized in the cytoplasm, whereas ORF3 truncated peptides without the 40-91 aa segment were distributed in the whole cell (in both cytoplasm and nucleus). This suggests that the 40-91 aa is the key structural domain determining cytoplasmic location of PEDV ORF3 protein. The discovery provides reference for further clarifying intracellular transport and biological function of PEDV ORF3 protein.
Amino Acid Sequence
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Animals
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Chlorocebus aethiops
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Coronavirus Infections
;
virology
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Cytoplasm
;
virology
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Porcine epidemic diarrhea virus
;
genetics
;
Protein Domains
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Swine
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Vero Cells
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Viral Proteins
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chemistry
;
metabolism
3.Nucleus translocation of membrane/cytoplasm proteins in tumor cells.
Ziling ZHU ; Jing TAN ; Hong DENG
Journal of Zhejiang University. Medical sciences 2019;48(3):318-325
Proteins are the physical basis of life and perform all kinds of life activities. Proteins have different orientations and function in different tissues. The same protein, located in different subcellular regions, can perform different and even opposite functions. Both functional and structural proteins are capable of undergoing re-localization which can directly or indirectly participate in signal transduction. Due to abnormal transduction of signals during carcinogenesis, the proteins originally expressed in the cytoplasm are translocated into the nucleus and lead to functional changes in the tumor tissue. The changes of protein localization are affected by many factors, including the interaction between proteins, expression level of proteins and the cleaved intracellular domain of transmembrane protein.
Carcinogenesis
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pathology
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Cell Line, Tumor
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Cell Nucleus
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metabolism
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Cytoplasm
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metabolism
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Gene Expression Regulation, Neoplastic
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Humans
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Membrane Proteins
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metabolism
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Protein Domains
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Protein Transport
;
physiology
;
Signal Transduction
4.Tetrabromobisphenol A Promotes the Osteoclastogenesis of RAW264.7 Cells Induced by Receptor Activator of NF-kappa B Ligand In Vitro
So Young PARK ; Eun Mi CHOI ; Kwang Sik SUH ; Hyun Sook KIM ; Sang Ouk CHIN ; Sang Youl RHEE ; Deog Yoon KIM ; Seungjoon OH ; Suk CHON
Journal of Korean Medical Science 2019;34(41):e267-
BACKGROUND: Tetrabromobisphenol A (TBBPA), one of the most widely used brominated flame-retardants, is a representative persistent organic pollutants group. Studies on TBBPA toxicity have been conducted using various target cells; however, few studies have investigated TBBPA toxicity in bone cells. Therefore, this study investigated the in vitro effects of TBBPA on osteoclasts, a cell type involved in bone metabolism. METHODS: RAW264.7 cells were cultured in medium containing 50 ng/mL receptor activator of nuclear factor kappa B ligand (RANKL) and varying concentrations of TBBPA. To evaluate the effects of TBBPA on the differentiation and function of osteoclasts, osteoclast-specific gene expression, tartrate-resistant acid phosphatase (TRAP) activity, bone resorbing activity, mitochondrial membrane potential (MMP) and mitochondrial superoxide were measured. RESULTS: The presence of 20 μM TBBPA significantly increased TRAP activity in RANKL-stimulated RAW264.7 cells, the bone resorbing activity of osteoclasts, and the gene expression of Akt2, nuclear factor of activated T-cells cytoplasmic 1, and chloride channel voltage-sensitive 7. However, TBBPA treatment caused no change in the expression of carbonic anhydrase II, cathepsin K, osteopetrosis-associated transmembrane protein 1, Src, extracellular signal-related kinase, GAB2, c-Fos, or matrix metalloproteinase 9. Furthermore, 20 μM TBBPA caused a significant decrease in MMP and a significant increase in mitochondrial superoxide production. CONCLUSION: This study suggests that TBBPA promotes osteoclast differentiation and activity. The mechanism of TBBPA-stimulated osteoclastogenesis might include increased expression of several genes involved in osteoclast differentiation and reactive oxygen species production.
Acid Phosphatase
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Carbonic Anhydrase II
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Cathepsin K
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Chloride Channels
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Cytoplasm
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Gene Expression
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In Vitro Techniques
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Matrix Metalloproteinase 9
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Membrane Potential, Mitochondrial
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Metabolism
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Osteoclasts
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Phosphotransferases
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RANK Ligand
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Reactive Oxygen Species
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Receptor Activator of Nuclear Factor-kappa B
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Superoxides
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T-Lymphocytes
5.Role of cytoplasmic lncRNAs in regulating cancer signaling pathways.
Pei-Fen FU ; Xin ZHENG ; Xiao FAN ; Ai-Fu LIN
Journal of Zhejiang University. Science. B 2019;20(1):1-8
Cancer remains a serious healthcare problem despite significant improvements in early detection and treatment approaches in the past few decades. Novel biomarkers for diagnosis and therapeutic strategies are urgently needed. In recent years, long noncoding RNAs (lncRNAs) have been reported to be aberrantly expressed in tumors and show crosstalk with key cancer-related signaling pathways. In this review, we summarized the current progress of research on cytoplasmic lncRNAs and their roles in regulating cancer signaling and tumor progression, further characterization of which may lead to effective approaches for cancer prevention and therapy.
Animals
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Biomarkers, Tumor/metabolism*
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Cytoplasm/metabolism*
;
Hippo Signaling Pathway
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Humans
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Hypoxia-Inducible Factor 1, alpha Subunit/metabolism*
;
Neoplasms/metabolism*
;
Phosphatidylinositol 3-Kinases/metabolism*
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Protein Serine-Threonine Kinases/metabolism*
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Proto-Oncogene Proteins c-akt/metabolism*
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RNA, Long Noncoding/metabolism*
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Signal Transduction/genetics*
6.The Role of Exportin-5 in MicroRNA Biogenesis and Cancer.
Ke WU ; Juan HE ; Wenchen PU ; Yong PENG
Genomics, Proteomics & Bioinformatics 2018;16(2):120-126
MicroRNAs (miRNAs) are conserved small non-coding RNAs that play an important role in the regulation of gene expression and participate in a variety of biological processes. The biogenesis of miRNAs is tightly controlled at multiple steps, such as transcription of miRNA genes, processing by Drosha and Dicer, and transportation of precursor miRNAs (pre-miRNAs) from the nucleus to the cytoplasm by exportin-5 (XPO5). Given the critical role of nuclear export of pre-miRNAs in miRNA biogenesis, any alterations of XPO5, resulting from either genetic mutation, epigenetic change, abnormal expression level or posttranslational modification, could affect miRNA expression and thus have profound effects on tumorigenesis. Importantly, XPO5 phosphorylation by ERK kinase and its cis/trans isomerization by the prolyl isomerase Pin1 impair XPO5's nucleo-to-cytoplasmic transport ability of pre-miRNAs, leading to downregulation of mature miRNAs in hepatocellular carcinoma. In this review, we focus on how XPO5 transports pre-miRNAs in the cells and summarize the dysregulation of XPO5 in human tumors.
Carcinoma, Hepatocellular
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genetics
;
metabolism
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Cell Nucleus
;
metabolism
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Cytoplasm
;
metabolism
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Humans
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Karyopherins
;
chemistry
;
metabolism
;
physiology
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Liver Neoplasms
;
genetics
;
metabolism
;
MicroRNAs
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chemistry
;
metabolism
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NIMA-Interacting Peptidylprolyl Isomerase
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Neoplasms
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genetics
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metabolism
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RNA Precursors
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chemistry
;
metabolism
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RNA Transport
7.Angiotensin II Modulates p130Cas of Podocytes by the Suppression of AMP-Activated Protein Kinase.
Tae Sun HA ; Hye Young PARK ; Su Bin SEONG ; Hee Yul AHN
Journal of Korean Medical Science 2016;31(4):535-541
Angiotensin II (Ang II) induces the pathological process of vascular structures, including renal glomeruli by hemodynamic and nonhemodynamic direct effects. In kidneys, Ang II plays an important role in the development of proteinuria by the modification of podocyte molecules. We have previously found that Ang II suppressed podocyte AMP-activated protein kinase (AMPK) via Ang II type 1 receptor and MAPK signaling pathway. In the present study, we investigated the roles of AMPK on the changes of p130Cas of podocyte by Ang II. We cultured mouse podocytes and treated them with various concentrations of Ang II and AMPK-modulating agents and analyzed the changes of p130Cas by confocal imaging and western blotting. In immunofluorescence study, Ang II decreased the intensity of p130Cas and changed its localization from peripheral cytoplasm into peri-nuclear areas in a concentrated pattern in podocytes. Ang II also reduced the amount of p130Cas in time and dose-sensitive manners. AMPK activators, metformin and AICAR, restored the suppressed and mal-localized p130Cas significantly, whereas, compound C, an AMPK inhibitor, further aggravated the changes of p130Cas. Losartan, an Ang II type 1 receptor antagonist, recovered the abnormal changes of p130Cas suppressed by Ang II. These results suggest that Ang II induces the relocalization and suppression of podocyte p130Cas by the suppression of AMPK via Ang II type 1 receptor, which would contribute to Ang II-induced podocyte injury.
AMP-Activated Protein Kinases/antagonists & inhibitors/chemistry/*metabolism
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Aminoimidazole Carboxamide/analogs & derivatives/pharmacology
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Angiotensin II/*pharmacology
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Angiotensin II Type 1 Receptor Blockers/pharmacology
;
Animals
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Blotting, Western
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Cell Line
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Cell Nucleus/metabolism
;
Crk-Associated Substrate Protein/*metabolism
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Cytoplasm/metabolism
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Focal Adhesion Kinase 1/metabolism
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Losartan/pharmacology
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Metformin/pharmacology
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Mice
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Microscopy, Confocal
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Podocytes/cytology/drug effects/metabolism
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Protein Kinase Inhibitors/*pharmacology
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Ribonucleotides/pharmacology
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Signal Transduction/*drug effects
8.Role of nuclear factor of activated T cells-2 in high mobility protein box-1 release in human monocytic THP-1 cells in vitro.
Qing ZHAO ; Li WANG ; Jie HU ; Hui LIU
Journal of Southern Medical University 2016;36(1):8-12
OBJECTIVETo investigate the role of nuclear factor of activated T cells -2 (NFAT2) in release of high mobility protein box-1 (HMGB1) from human monocytic THP-1 cells in vitro.
METHODSThe level of HMGB1 release from THP-1 cells in response to lipopolysaccharide (LPS) stimulation was examined by Western blotting and enzyme-linked immunosorbent assay (ELISA). The effect of LPS stimulation on NFAT2 and HMGB1 interaction in the cytoplasm was observed by immunoprecipitation assay. HMGB1 production and release was detected in cells with specific small interfering RNA (siRNA)-mediated suppression of NFAT2 expression.
RESULTSLPS stimulated HMGB1 release from THP-1 cells. As LPS stimulation prolonged, HMGB1 concentration increased in the cell culture supernatant and decreased in the cytoplasm, and the binding between NFAT2 and HMGB1 was not detected in the cell nuclei. NFAT2 suppression by the siRNA plasmid resulted in increased HMGB1 level in the cell culture supernatant.
CONCLUSIONNFAT2 can inhibit HMGB1 release from THP-1 cells in vitro.
Blotting, Western ; Cell Line ; Cell Nucleus ; Cytoplasm ; metabolism ; Enzyme-Linked Immunosorbent Assay ; HMGB1 Protein ; metabolism ; Humans ; Lipopolysaccharides ; Monocytes ; metabolism ; NFATC Transcription Factors ; metabolism
9.Association between protective effect of Liuwei Wuling tablets against acute liver injury and its inhibitory effect on cytoplasmic translocation of high-mobility group box-1 in hepatocytes in mice.
Yangchang LEI ; Wen LI ; Pan LUO
Chinese Journal of Hepatology 2016;24(2):114-118
OBJECTIVETo investigate the effect of Liuwei Wuling tablets on the cytoplasmic translocation and release of high-mobility group box-1 (HMGB1) in hepatocytes in mice with acute live injury induced by D-galactosamine (D-GalN) and lipopolysaccharide (LPS).
METHODSA Balb/c mouse model of acute liver injury was established by intraperitoneal injection of D-GalN (400 mg/kg) and LPS (5 ug/kg). A total of 24 healthy mice were randomly and equally divided into acute liver injury control group and Liuwei Wuling tablet treatment group. The serum levels of alanine aminotransferase (ALT) and aspartate aminotransferase (AST) were measured in both groups at each time point within one week. Liver tissues were collected at 36 hours to perform pathological examination. The serum levels of HMGB1, tumor necrosis factor-α (TNF-α), interleukin-1β (IL-1β), interleukin-6 (IL-6), complement 3a (C3a), and complement 5a (C5a) were measured. Immunohistochemistry was used to determine the expression and cytoplasmic translocation of HMGB1 in hepatocytes.
RESULTSAt 6, 12, and 24 hours, the Liuwei Wuling tablet treatment group had significantly lower serum levels of ALT than the control group (225.33±181.64 U/L vs 471.17±174.72 U/L, t = 3.38, P < 0.01; 1509.53±182.51 U/L vs 7149.52±734.25 U/L, t = 25.82, P < 0.01; 162.89±86.51 U/L vs 1318.16±557.71 U/L, t = 7.09, P < 0.01), as well as significantly lower serum levels of AST than the control group (179.22±94.57 U/L vs 561.91±209.6 U/L, t = 5.76, P < 0.01; 590.92±190.92 U/L vs 2266.48±705.64 U/L, t = 7.94, P < 0.01; 231.24±87.7 U/L vs 444.32±117.01 U/L, t = 5.05, P < 0.01). The treatment group had significantly lower levels of HMGB1 than the control group at 6 and 12 hours (54.21±11.89 ng/ml vs 72.07±13.65 ng/ml, t = 3.41, P < 0.01; 49.23±5.97 ng/ml vs 68.71±13.07 ng/ml, t = 4.70, P < 0.01). The treatment group had significantly lower levels of TNF-α, IL-1β, and IL-6 than the control group at 12 hours (163.62±9.12 pg/ml vs 237.09±51.47 pg/ml, t = 4.86, P < 0.01; 15.66±13.13 pg/ml vs 37.43±18.68 pg/ml, t = 3.30, P < 0.01; 7.10±3.06 pg/ml vs 21.42±8.23 pg/ml, t = 5.65, P < 0.01). The treatment group had significantly lower levels of C3a and C5a than the control group at 12 hours (2.52±1.27 pg/ml vs 9.83±2.96 ng/ml, t = 7.86, P < 0.01; 2.16±1.03 ng/ml vs 7.23±1.55 ng/ml, t = 9.67, P < 0.01). Compared with the control group, the treatment group had significantly reduced liver inflammation and necrosis, and a significantly lower cytoplasmic translocation rate of HMGB1 in hepatocytes (38.76%±7.37% vs 8.15%±2.11%, P < 0.01).
CONCLUSIONLiuwei Wuling tablets can reduce the cytoplasmic translocation of HMGB1 in hepatocytes and relieve liver inflammation in mice with acute liver injury.
Alanine Transaminase ; blood ; Animals ; Aspartate Aminotransferases ; blood ; Complement C3a ; analysis ; Complement C5a ; analysis ; Cytoplasm ; metabolism ; Drugs, Chinese Herbal ; pharmacology ; Galactosamine ; HMGB1 Protein ; metabolism ; Hepatocytes ; drug effects ; Interleukin-1beta ; blood ; Interleukin-6 ; blood ; Lipopolysaccharides ; Liver Failure, Acute ; drug therapy ; Mice ; Mice, Inbred BALB C ; Protein Transport ; Tablets ; Tumor Necrosis Factor-alpha ; blood
10.Preparation of SUN5-specific polyclonal antibody for detection of SUN5 expression in human germ cells.
Jing-Fang WANG ; Li-Hua HUANG ; Yong WU ; Lin-Fei YANG ; Yao REN ; Xiao-Wei XING
Journal of Southern Medical University 2016;36(5):645-648
OBJECTIVETo prepare a specific polyclonal antibody against full-length SUN5 for detecting the expression of SUN5 in human germ cells.
METHODSBioinformatic methods were used to compare the full-length SUN5 and its variant SUN5β, and a short peptide was designed based on the differential region to prepare SUN5 antibody. The prepared antibody was used to detect the expression of SUN5 in Ntera-2 cells and in human germ cells by Western blotting and immunofluorescence assay.
RESULTSThe short peptide was correctly synthesized and SUN5 antibody was obtained and purified. Western blotting showed that the prepared antibody was capable of recognizing full-length SUN5 in Ntera-2 cells, and SUN5 expression was localized on the nuclear membrane and in the cytoplasm as shown by immunofluorescence assay. Using this antibody, we detected SUN5 expression in the spermatocytes, round spermatids and sperms in human germ cells.
CONCLUSIONWe successfully prepared SUN5-specific antibody. SUN5 is expressed in the spermatocytes, round spermatids and sperms in human germ cells, suggesting its important role in spermatogenesis.
Antibodies ; chemistry ; Blotting, Western ; Cytoplasm ; metabolism ; Fluorescent Antibody Technique ; Humans ; Male ; Nuclear Envelope ; metabolism ; Proteins ; immunology ; metabolism ; Spermatids ; metabolism ; Spermatocytes ; metabolism ; Spermatogenesis ; Spermatozoa ; metabolism

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