1.Analysis of gene mutation in a pedigree with autosomal dominant Charcot-Marie-Tooth disease.
Li QIN ; Canhong YANG ; Tianming LÜ ; Lanying LI ; Dandan ZONG ; Yueying WU
Journal of Southern Medical University 2019;39(1):63-68
OBJECTIVE:
To investigate the molecular genetic mechanism of Charcot- Marie-Tooth (CMT) disease in a pedigree.
METHODS:
Genomic DNA was extracted from the peripheral blood of the family members of a pedigree with autosomal dominant CMT disease, and 65 candidate genes of the proband were screened using target exon capture and the next generation sequencing, and the suspicious genes were verified using Sanger sequencing. PolyPhen-2, PROVEAN and SIFT software were used to predict the function of the mutant genes, and PyMOL-1 software was used to simulate the mutant protein structure.
RESULTS:
A heterozygous missense mutation [c.371A>G (p.Y124C)] was detected in exon 3 of gene of the proband. This heterozygous mutation was also detected in both the proband's mother and her brother, but not in her father. Multiple sequence alignment analysis showed that tyrosine at codon 124 of GDAP1 protein was highly conserved. All the 3 prediction software predicted that the mutation was harmful. Molecular structure simulation showed a weakened interaction force between the amino acid residues at codon 124 and the surrounding amino acid residues to affect the overall stability of the protein.
CONCLUSIONS
The mutation of gene may be related to the pathogenesis of autosomal dominant AD-CMT in this pedigree. The newly discovered c.371A>G mutation (p.Y124C) expands the mutation spectrum of gene, but further study is needed to clarify the underlying pathogenesis.
Amino Acids
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Charcot-Marie-Tooth Disease
;
genetics
;
Female
;
Genes, Dominant
;
genetics
;
Heterozygote
;
High-Throughput Nucleotide Sequencing
;
methods
;
Humans
;
Male
;
Mutation, Missense
;
Nerve Tissue Proteins
;
genetics
;
Pedigree
;
Software
2.Molecular genetic analysis and clinical phenotype of a pedigree with familial dominant drusen.
Ting ZHANG ; Xuelu XIE ; Zhibing ZENG ; Dan MENG ; Fang LU
Chinese Journal of Medical Genetics 2015;32(3):358-362
OBJECTIVETo analyze clinical features and mutations of EFEMP1 gene in a Chinese pedigree with familial dominant drusen.
METHODSClinical features of the pedigree were studied with fundus photography, fundus fluorescein angiography and optical coherence tomography. Molecular genetic analysis was performed on the patients and unaffected individuals from the family. All coding exons of the EFEMP1 gene were amplified by polymerase chain reaction (PCR) and sequenced. The results were compared with wild-type sequences from NCBI. The proband who had suffered from choroidal neovascularization and preretinal hemorrhage received an intravitreal injection of an anti-vascular endothelial growth factor (VEGF) preparation.
RESULTSA heterozygous mutation C>T (R345W) was identified in exon 10 of the EFEMP1 gene in two affected individuals from the family. The same mutation was not detected in unaffected family members and 100 healthy individuals. Postoperative follow-up of the patient receiving intravitreal injection of anti-VEGF drug showed that visual acuity was improved and fundus appeared to be stable.
CONCLUSIONThe R345W mutation in EFEMP1 is responsible for the dominant drusen in this family. Intravitreal injection of anti-VEGF drug is a promising treatment for the improvement in vision.
Adult ; Asian Continental Ancestry Group ; genetics ; Base Sequence ; Exons ; Extracellular Matrix Proteins ; genetics ; Female ; Genes, Dominant ; Humans ; Male ; Molecular Sequence Data ; Mutation, Missense ; Pedigree ; Retinal Drusen ; genetics ; metabolism ; Vascular Endothelial Growth Factor A ; metabolism ; Young Adult
3.Analysis of CSF1R gene mutation in a Chinese family with hereditary diffuse leukoencephalopathy with neuroaxonal spheroids.
Xinxin CHENG ; Wei SHEN ; Haiqiang ZOU ; Lu SHEN ; Xiaohua GU ; Danqing HUANG ; Yi SUN ; Bianrong WANG ; Qi TIAN ; Jun XU
Chinese Journal of Medical Genetics 2015;32(2):208-212
OBJECTIVETo identify potential mutation of the colony stimulating factor 1 receptor gene (CSF1R) in a large Chinese family affected with hereditary diffuse leukoencephalopathy with spheroids (HDLS) and analyze the genotype-phenotype correlation.
METHODSThe proband was evaluated physically and radiologically to ascertain the HDLS phenotype. Genomic DNA was extracted from peripheral blood samples from family members. The coding region of the CSF1R gene was amplified with PCR and subjected to direct DNA sequencing.
RESULTSThere were 9 affected members (5 alive) in this five-generation family (1 member had died during the follow-up). A missense mutation c.2563C>A (p.P855T) of the CSF1R gene has been identified in the proband. The same mutation was identified in 3 affected and 1 unaffected members of the family.
CONCLUSIONThe family was consistent with autosomal dominant inheritance. CSF1R gene mutation is also a disease-causing mutation in Chinese patients.
Adult ; Asian Continental Ancestry Group ; genetics ; Base Sequence ; Child ; Female ; Genes, Dominant ; Humans ; Leukoencephalopathies ; genetics ; Male ; Middle Aged ; Molecular Sequence Data ; Mutation, Missense ; Pedigree ; Receptor, Macrophage Colony-Stimulating Factor ; genetics
4.Mutation analysis of HOXD13 gene in a Chinese family affected with autosomal dominant synpolydactyly.
Yan LI ; Qian XIN ; Shan SHAN ; Jiangxia LI ; Qiji LIU
Chinese Journal of Medical Genetics 2015;32(4):481-484
OBJECTIVETo detect potential mutation in a Chinese family affected with autosomal-dominant synpolydactyly and to provide the basis for prenatal diagnosis.
METHODSInheritance pattern was determined by clinical examination and pedigree analysis. Blood samples were obtained from members of the family. Genomic DNA was extracted and sequenced following PCR amplification. Suspected mutation was confirmed by subclone sequencing and agarose gel electrophoresis.
RESULTSA 27 bp expansion mutation in exon 1 of HOXD13 was identified in all affected individuals from the family but not in unaffected members and normal controls. The mutation has caused insertion of 9 alanines in the polyalanine-expansion region of HOXD13 protein.
CONCLUSIONA polyalanine-expansion within the HOXD13 probably underlies the disease in this family.
Adult ; Asian Continental Ancestry Group ; genetics ; Base Sequence ; China ; DNA Mutational Analysis ; Exons ; Female ; Genes, Dominant ; Homeodomain Proteins ; genetics ; Humans ; Male ; Molecular Sequence Data ; Mutation ; Pedigree ; Syndactyly ; genetics ; Transcription Factors ; genetics
5.A novel HSF4 mutation in a Chinese family with autosomal dominant congenital cataract.
Ling LIU ; Qing ZHANG ; Lu-xin ZHOU ; Zhao-hui TANG
Journal of Huazhong University of Science and Technology (Medical Sciences) 2015;35(2):316-318
This study was aimed to identify the mutation of the whole coding region of shock transcription factor 4 (HSF4) gene in a Chinese family with autosomal dominant congenital cataract (ADCC). All exons of HSF4 were amplified by PCR. Sequence analysis of PCR products was performed. Restriction fragment length polymorphism (RFLP) analysis was conducted to confirm the pathogenic mutation. The results showed that a C to T substitution occurred at nucleotide 331 in patients of this family, leading to the replacement of the amino acid arginine-111 with cysteine in exon 3. RFLP analysis showed that the amino acid change was co-segregated with all affected individuals. It was concluded that the new mutation of c.331C>T in HSF4 DNA may be responsible for the autosomal dominant congenital cataract in this family.
Amino Acid Sequence
;
Animals
;
Base Sequence
;
Cataract
;
congenital
;
genetics
;
China
;
DNA Primers
;
DNA-Binding Proteins
;
chemistry
;
genetics
;
Female
;
Genes, Dominant
;
Heat Shock Transcription Factors
;
Humans
;
Male
;
Molecular Sequence Data
;
Mutation
;
Pedigree
;
Polymerase Chain Reaction
;
Polymorphism, Restriction Fragment Length
;
Sequence Homology, Amino Acid
;
Transcription Factors
;
chemistry
;
genetics
6.Autosomal Dominant Type I Osteopetrosis Is Related with Iatrogenic Fractures in Arthroplasty.
Ruud P VAN HOVE ; Tjitte DE JONG ; Peter A NOLTE
Clinics in Orthopedic Surgery 2014;6(4):484-488
Autosomal dominant osteopetrosis (ADO) is a sclerotic bone disorder due to failure of osteoclasts. ADO poses difficulties during arthroplasty because of the increased chance for iatrogenic fractures due to sclerotic bone. ADO is divided into two types based on radiological findings, fracture risk, and osteoclast activity. These differences suggest less brittle bone in patients with ADO I compared to that of patients with ADO II, which suggests a smaller chance of preoperative fractures during cementless arthroplasty in ADO I compared with that in ADO II. A case of cementless total knee arthroplasty in a patient with ADO I is presented. Total hip arthroplasty was performed during follow-up, and known major problems related to ADO II were experienced. Therefore, the differences between ADO I and ADO II may not be clinically relevant for an iatrogenic fracture during arthroplasty in patients with ADO.
Acetabulum/injuries
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Adult
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Arthroplasty, Replacement, Knee/*adverse effects
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Down Syndrome/complications
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Female
;
Femoral Fractures/etiology/surgery
;
Genes, Dominant
;
Humans
;
Iatrogenic Disease
;
Knee Joint/surgery
;
Osteoarthritis, Knee/complications/*surgery
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Osteopetrosis/complications/*surgery
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Periprosthetic Fractures/*etiology/surgery
;
Tibial Fractures/etiology/therapy
7.Analysis of gene mutation in a family featuring autosomal dominant May-Hegglin anomaly.
Yapei FENG ; Xiaofan GUO ; Lin LI ; Jiangxia LI ; Zhonglu LIU ; Xiaoyan ZHU ; Qiji LIU
Chinese Journal of Medical Genetics 2013;30(3):305-308
OBJECTIVETo analyze clinical features and mutation in MYH9 gene for a family featuring autosomal dominant May-Hegglin anomaly.
METHODSClinical and pathological features of all family members were analyzed. Blood samples were collected from the proband and other family members, and genomic DNA was extracted. Potential mutations of MYH9 gene exons 10, 25, 26, 30, 38 and 40 were screened with PCR and direct sequencing. After a mutation was identified in the proband, other affected members as well as healthy members from this family were analyzed with a pair of primers to amplify the mutant site. The PCR products were digested with Taq I enzyme and analyzed with agarose gel electrophoresis.
RESULTSAll affected members had bleeding tendency and typical features including giant platelets, thrombocytopenia and characteristic Dohle body-like leukocyte inclusions. A heterozygous missense mutation c.5521G>A (p.Glu1841Lys) in exon 38 of the MYH9 gene was identified in all affected members from this family.
CONCLUSIONThe variant, c.5521G>A (p.Glu1841Lys) of MYH9, has co-segregated with the phenotype in the family. The mutant site is a hot spot in Chinese population.
Asian Continental Ancestry Group ; genetics ; Base Sequence ; China ; Exons ; Female ; Genes, Dominant ; Hearing Loss, Sensorineural ; Humans ; Male ; Molecular Motor Proteins ; genetics ; Mutation ; Myosin Heavy Chains ; genetics ; Pedigree ; Phenotype ; Thrombocytopenia ; diagnosis ; genetics
8.Mutation analysis of CRYBB1 gene and prenatal diagnosis for a Chinese kindred featuring autosomal dominant congenital nuclear cataract.
Qinghua WU ; Huirong SHI ; Ning LIU ; Ning LU ; Miao JIANG ; Zhenhua ZHAO ; Xiangdong KONG
Chinese Journal of Medical Genetics 2013;30(3):266-269
OBJECTIVETo perform mutation screening and prenatal diagnosis for a five-generation Chinese pedigree with autosomal dominant congenital nuclear cataract from Henan province by DNA sequencing.
METHODSBlood samples were taken from the family members. Four candidate genes (CRYBA1/A3, CRYBB1, CRYBB2 and CRYGD) were screened for mutations using direct sequencing. Prenatal genetic diagnosis was provided for a fetus at early gestation through chorionic villus sampling.
RESULTSA missense mutation, c.387C to A, was detected in exon 4 of the CRYBB1 gene in all of the patients. The mutation has resulted in a p.S129R transversion. The same mutation was not found in the fetus of the proband, who was confirmed to be healthy by one-year follow-up.
CONCLUSIONA missense mutation p.S129R of the CRYBB1 gene probably underlies the autosomal dominant congenital nuclear cataract in this pedigree. Detection of the mutation also facilitated prenatal genetic testing for the family.
Asian Continental Ancestry Group ; genetics ; Base Sequence ; Cataract ; congenital ; diagnosis ; genetics ; China ; DNA Mutational Analysis ; Female ; Genes, Dominant ; Genetic Counseling ; Genotype ; Humans ; Male ; Mutation ; Pedigree ; Pregnancy ; Prenatal Diagnosis ; Young Adult ; beta-Crystallin B Chain ; genetics
9.Clinical features and mutation analysis of CHRNA4 gene for families and sporadic cases affected with autosomal dominant nocturnal frontal lobe epilepsy.
Qiong-xiang ZHAI ; Chun WANG ; Qian CHEN ; Yu-xiong GUO ; Zhi-hong CHEN ; Yu-xin ZHANG ; Juan GUI ; Zhi-hong TANG ; Mu-qing ZHUO
Chinese Journal of Medical Genetics 2013;30(6):662-665
OBJECTIVETo investigate mutations of CHRNA4 gene in Chinese patients with autosomal dominant nocturnal frontal lobe epilepsy (ADNFLE).
METHODSTwo hundred and fifty-seven patients (including 215 sporadic and 42 familial cases) were analyzed. Mutational screening was performed by sequencing all of the 6 exons of the CHRNA4 gene including the donor and acceptor splice sites.
RESULTSThe results have excluded the involvement of any known mutations of the CHRNA4 gene. A novel synonymous mutation c.570C>T(D190D) and 6 single nucleotide polymorphisms (SNPs) of the CHRNA4 gene were detected in 6 sporadic cases, including c.639T/C, c.678T/C, c.1209G/T, c.1227T/C, c.1659G/A, and c.1629C/T. The SNP D190D was hererozygous and absent in 200 healthy controls.
CONCLUSIONThis results suggested that mutations of the CHRNA4 gene may be rare in southern Chinese population with ADNFLE. The synonymous mutation D190D has not been reported previously. Its impact on the pathogenesis of ADNFLE warrant further study.
Adolescent ; Adult ; Asian Continental Ancestry Group ; genetics ; Child ; Child, Preschool ; DNA Mutational Analysis ; methods ; Epilepsy, Frontal Lobe ; genetics ; Female ; Genes, Dominant ; Humans ; Infant ; Male ; Mutation ; Pedigree ; Polymorphism, Single Nucleotide ; Receptors, Nicotinic ; genetics ; Young Adult
10.Inhibition of HBV replication by VPS4B and its dominant negative mutant VPS4B-K180Q in vivo.
Jianbo XIA ; Weipeng WANG ; Lei LI ; Zhi LIU ; Min LIU ; Dongliang YANG
Journal of Huazhong University of Science and Technology (Medical Sciences) 2012;32(3):311-316
This study examined the anti-hepatitis B virus (HBV) effect of wild-type (WT) vacuolar protein sorting 4B (VPS4B) and its dominant negative (DN) mutant VPS4B-K180Q in vivo in order to further explore the relationship between HBV and the host cellular factor VPS4. VPS4B gene was amplified from Huh7 cells by RT-PCR and cloned into the eukaryotic expression vector pXF3H. Then, the VPS4B plasmid and the VPS4B-K180Q mutation plasmid were constructed by using the overlap extension PCR site-directed mutagenesis technique. VPS4B and HBV vectors were co-delivered into mice by the hydrodynamic tail-vein injection to establish HBV vector-based models. Quantities of HBsAg and HBeAg in the mouse sera were determined by ElectroChemiLuminescence (ECL). HBV DNA in sera was measured by real-time quantitative PCR. Southern blot analysis was used to assay the intracellular HBV nuclear capsid-related DNA, real-time quantitative PCR to detect the HBV-related mRNA and immunohistochemical staining to observe the HBcAg expression in the mouse liver tissues. Our results showed that VPS4B and its mutant VPS4B-K180Q could decrease the levels of serum HBsAg, HBeAg and HBV-DNA. In addition, the HBV DNA replication and the mRNA level of HBV in the liver tissues of treated mice could be suppressed by VPS4B and VPS4B-K180Q. It was also found that VPS4B and VPS4B-K180Q had an ability to inhibit core antigen expression in the infected mouse liver. Furthermore, the anti-HBV effect of mutant VPS4B-K180Q was more potent than that of wild-type VPS4B. Taken together, it was concluded that VPS4B and its DN mutant VPS4B-K180Q have anti-HBV effect in vivo, which helps develop molecular therapeutic strategies for HBV infection.
ATPases Associated with Diverse Cellular Activities
;
Adenosine Triphosphatases
;
physiology
;
Animals
;
Endosomal Sorting Complexes Required for Transport
;
physiology
;
Female
;
Genes, Dominant
;
genetics
;
Hepatitis B
;
metabolism
;
virology
;
Hepatitis B virus
;
physiology
;
Liver
;
virology
;
Mice
;
Mice, Inbred BALB C
;
Mutation
;
genetics
;
Virus Inactivation

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