1.Research progress on medical image dataset expansion methods.
Ying CHEN ; Hongping LIN ; Wei ZHANG ; Longfeng FENG ; Cheng ZHENG ; Taohui ZHOU ; Zhen YI ; Lan LIU
Journal of Biomedical Engineering 2023;40(1):185-192
Computer-aided diagnosis (CAD) systems play a very important role in modern medical diagnosis and treatment systems, but their performance is limited by training samples. However, the training samples are affected by factors such as imaging cost, labeling cost and involving patient privacy, resulting in insufficient diversity of training images and difficulty in data obtaining. Therefore, how to efficiently and cost-effectively augment existing medical image datasets has become a research hotspot. In this paper, the research progress on medical image dataset expansion methods is reviewed based on relevant literatures at home and abroad. First, the expansion methods based on geometric transformation and generative adversarial networks are compared and analyzed, and then improvement of the augmentation methods based on generative adversarial networks are emphasized. Finally, some urgent problems in the field of medical image dataset expansion are discussed and the future development trend is prospected.
Humans
;
Diagnosis, Computer-Assisted
;
Diagnostic Imaging
;
Datasets as Topic
2.Alzheimer's disease classification based on nonlinear high-order features and hypergraph convolutional neural network.
An ZENG ; Bairong LUO ; Dan PAN ; Huabin RONG ; Jianfeng CAO ; Xiaobo ZHANG ; Jing LIN ; Yang YANG ; Jun LIU
Journal of Biomedical Engineering 2023;40(5):852-858
Alzheimer's disease (AD) is an irreversible neurodegenerative disorder that damages patients' memory and cognitive abilities. Therefore, the diagnosis of AD holds significant importance. The interactions between regions of interest (ROIs) in the brain often involve multiple areas collaborating in a nonlinear manner. Leveraging these nonlinear higher-order interaction features to their fullest potential contributes to enhancing the accuracy of AD diagnosis. To address this, a framework combining nonlinear higher-order feature extraction and three-dimensional (3D) hypergraph neural networks is proposed for computer-assisted diagnosis of AD. First, a support vector machine regression model based on the radial basis function kernel was trained on ROI data to obtain a base estimator. Then, a recursive feature elimination algorithm based on the base estimator was applied to extract nonlinear higher-order features from functional magnetic resonance imaging (fMRI) data. These features were subsequently constructed into a hypergraph, leveraging the complex interactions captured in the data. Finally, a four-dimensional (4D) spatiotemporal hypergraph convolutional neural network model was constructed based on the fMRI data for classification. Experimental results on the Alzheimer's Disease Neuroimaging Initiative (ADNI) database demonstrated that the proposed framework outperformed the Hyper Graph Convolutional Network (HyperGCN) framework by 8% and traditional two-dimensional (2D) linear feature extraction methods by 12% in the AD/normal control (NC) classification task. In conclusion, this framework demonstrates an improvement in AD classification compared to mainstream deep learning methods, providing valuable evidence for computer-assisted diagnosis of AD.
Humans
;
Alzheimer Disease/diagnostic imaging*
;
Neural Networks, Computer
;
Magnetic Resonance Imaging/methods*
;
Neuroimaging/methods*
;
Diagnosis, Computer-Assisted
;
Brain
;
Cognitive Dysfunction
3.Non-local attention and multi-task learning based lung segmentation in chest X-ray.
Liang XIONG ; Xiaolin QIN ; Xin LIU
Journal of Biomedical Engineering 2023;40(5):912-919
Precise segmentation of lung field is a crucial step in chest radiographic computer-aided diagnosis system. With the development of deep learning, fully convolutional network based models for lung field segmentation have achieved great effect but are poor at accurate identification of the boundary and preserving lung field consistency. To solve this problem, this paper proposed a lung segmentation algorithm based on non-local attention and multi-task learning. Firstly, an encoder-decoder convolutional network based on residual connection was used to extract multi-scale context and predict the boundary of lung. Secondly, a non-local attention mechanism to capture the long-range dependencies between pixels in the boundary regions and global context was proposed to enrich feature of inconsistent region. Thirdly, a multi-task learning to predict lung field based on the enriched feature was conducted. Finally, experiments to evaluate this algorithm were performed on JSRT and Montgomery dataset. The maximum improvement of Dice coefficient and accuracy were 1.99% and 2.27%, respectively, comparing with other representative algorithms. Results show that by enhancing the attention of boundary, this algorithm can improve the accuracy and reduce false segmentation.
X-Rays
;
Algorithms
;
Diagnosis, Computer-Assisted
;
Thorax/diagnostic imaging*
;
Lung/diagnostic imaging*
;
Image Processing, Computer-Assisted
4.Detection method of early heart valve diseases based on heart sound features.
Chengfa SUN ; Xinpei WANG ; Changchun LIU
Journal of Biomedical Engineering 2023;40(6):1160-1167
Heart valve disease (HVD) is one of the common cardiovascular diseases. Heart sound is an important physiological signal for diagnosing HVDs. This paper proposed a model based on combination of basic component features and envelope autocorrelation features to detect early HVDs. Initially, heart sound signals lasting 5 minutes were denoised by empirical mode decomposition (EMD) algorithm and segmented. Then the basic component features and envelope autocorrelation features of heart sound segments were extracted to construct heart sound feature set. Then the max-relevance and min-redundancy (MRMR) algorithm was utilized to select the optimal mixed feature subset. Finally, decision tree, support vector machine (SVM) and k-nearest neighbor (KNN) classifiers were trained to detect the early HVDs from the normal heart sounds and obtained the best accuracy of 99.9% in clinical database. Normal valve, abnormal semilunar valve and abnormal atrioventricular valve heart sounds were classified and the best accuracy was 99.8%. Moreover, normal valve, single-valve abnormal and multi-valve abnormal heart sounds were classified and the best accuracy was 98.2%. In public database, this method also obtained the good overall accuracy. The result demonstrated this proposed method had important value for the clinical diagnosis of early HVDs.
Humans
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Heart Sounds
;
Heart Valve Diseases/diagnosis*
;
Algorithms
;
Support Vector Machine
;
Signal Processing, Computer-Assisted
5.Artificial intelligence-assisted colonoscopy: a narrative review of current data and clinical applications.
James Weiquan LI ; Lai Mun WANG ; Tiing Leong ANG
Singapore medical journal 2022;63(3):118-124
Colonoscopy is the reference standard procedure for the prevention and diagnosis of colorectal cancer, which is a leading cause of cancer-related deaths in Singapore. Artificial intelligence systems are automated, objective and reproducible. Artificial intelligence-assisted colonoscopy has recently been introduced into clinical practice as a clinical decision support tool. This review article provides a summary of the current published data and discusses ongoing research and current clinical applications of artificial intelligence-assisted colonoscopy.
Artificial Intelligence
;
Colonic Polyps/diagnosis*
;
Colonoscopy/methods*
;
Colorectal Neoplasms/diagnosis*
;
Diagnosis, Computer-Assisted
;
Humans
6.Epilepsy detection and analysis method for specific patient based on data augmentation and deep learning.
Yong YANG ; Xiaolin QIN ; Xiaoguang LIN ; Han WEN ; Yuncong PENG
Journal of Biomedical Engineering 2022;39(2):293-300
In recent years, epileptic seizure detection based on electroencephalogram (EEG) has attracted the widespread attention of the academic. However, it is difficult to collect data from epileptic seizure, and it is easy to cause over fitting phenomenon under the condition of few training data. In order to solve this problem, this paper took the CHB-MIT epilepsy EEG dataset from Boston Children's Hospital as the research object, and applied wavelet transform for data augmentation by setting different wavelet transform scale factors. In addition, by combining deep learning, ensemble learning, transfer learning and other methods, an epilepsy detection method with high accuracy for specific epilepsy patients was proposed under the condition of insufficient learning samples. In test, the wavelet transform scale factors 2, 4 and 8 were set for experimental comparison and verification. When the wavelet scale factor was 8, the average accuracy, average sensitivity and average specificity was 95.47%, 93.89% and 96.48%, respectively. Through comparative experiments with recent relevant literatures, the advantages of the proposed method were verified. Our results might provide reference for the clinical application of epilepsy detection.
Algorithms
;
Child
;
Deep Learning
;
Electroencephalography
;
Epilepsy/diagnosis*
;
Humans
;
Seizures/diagnosis*
;
Signal Processing, Computer-Assisted
;
Wavelet Analysis
7.Electrocardiogram signal classification algorithm of nested long short-term memory network based on focal loss function.
Shiyu XU ; Site MO ; Huijun YAN ; Hua HUANG ; Jinhui WU ; Shaomin ZHANG ; Lin YANG
Journal of Biomedical Engineering 2022;39(2):301-310
Electrocardiogram (ECG) can visually reflect the physiological electrical activity of human heart, which is important in the field of arrhythmia detection and classification. To address the negative effect of label imbalance in ECG data on arrhythmia classification, this paper proposes a nested long short-term memory network (NLSTM) model for unbalanced ECG signal classification. The NLSTM is built to learn and memorize the temporal characteristics in complex signals, and the focal loss function is used to reduce the weights of easily identifiable samples. Then the residual attention mechanism is used to modify the assigned weights according to the importance of sample characteristic to solve the sample imbalance problem. Then the synthetic minority over-sampling technique is used to perform a simple manual oversampling process on the Massachusetts institute of technology and Beth Israel hospital arrhythmia (MIT-BIH-AR) database to further increase the classification accuracy of the model. Finally, the MIT-BIH arrhythmia database is applied to experimentally verify the above algorithms. The experimental results show that the proposed method can effectively solve the issues of imbalanced samples and unremarkable features in ECG signals, and the overall accuracy of the model reaches 98.34%. It also significantly improves the recognition and classification of minority samples and has provided a new feasible method for ECG-assisted diagnosis, which has practical application significance.
Algorithms
;
Arrhythmias, Cardiac/diagnosis*
;
Electrocardiography
;
Humans
;
Memory, Short-Term
;
Neural Networks, Computer
;
Signal Processing, Computer-Assisted
8.Design and implementation for portable ultrasound-aided breast cancer screening system.
Zhicheng WANG ; Bingbing HE ; Yufeng ZHANG ; Zhiyao LI ; Ruihan YAO ; Kai HUANG
Journal of Biomedical Engineering 2022;39(2):390-397
Early screening is an important means to reduce breast cancer mortality. In order to solve the problem of low breast cancer screening rates caused by limited medical resources in remote and impoverished areas, this paper designs a breast cancer screening system aided with portable ultrasound Clarius. The system automatically segments the tumor area of the B-ultrasound image on the mobile terminal and uses the ultrasound radio frequency data on the cloud server to automatically classify the benign and malignant tumors. Experimental results in this study show that the accuracy of breast tumor segmentation reaches 98%, and the accuracy of benign and malignant classification reaches 82%, and the system is accurate and reliable. The system is easy to set up and operate, which is convenient for patients in remote and poor areas to carry out early breast cancer screening. It is beneficial to objectively diagnose disease, and it is the first time for the domestic breast cancer auxiliary screening system on the mobile terminal.
Breast/pathology*
;
Breast Neoplasms/pathology*
;
Diagnosis, Computer-Assisted
;
Early Detection of Cancer
;
Female
;
Humans
;
Ultrasonography
;
Ultrasonography, Mammary/methods*
9.Heart sound classification based on improved mel frequency cepstrum coefficient and integrated decision network method.
Yuanlin WANG ; Jing SUN ; Hongbo YANG ; Tao GUO ; Jiahua PAN ; Weilian WANG
Journal of Biomedical Engineering 2022;39(6):1140-1148
Heart sound analysis is significant for early diagnosis of congenital heart disease. A novel method of heart sound classification was proposed in this paper, in which the traditional mel frequency cepstral coefficient (MFCC) method was improved by using the Fisher discriminant half raised-sine function (F-HRSF) and an integrated decision network was used as classifier. It does not rely on segmentation of the cardiac cycle. Firstly, the heart sound signals were framed and windowed. Then, the features of heart sounds were extracted by using improved MFCC, in which the F-HRSF was used to weight sub-band components of MFCC according to the Fisher discriminant ratio of each sub-band component and the raised half sine function. Three classification networks, convolutional neural network (CNN), long and short-term memory network (LSTM), and gated recurrent unit (GRU) were combined as integrated decision network. Finally, the two-category classification results were obtained through the majority voting algorithm. An accuracy of 92.15%, sensitivity of 91.43%, specificity of 92.83%, corrected accuracy of 92.01%, and F score of 92.13% were achieved using the novel signal processing techniques. It shows that the algorithm has great potential in early diagnosis of congenital heart disease.
Humans
;
Heart Sounds
;
Algorithms
;
Neural Networks, Computer
;
Heart Defects, Congenital/diagnosis*
;
Signal Processing, Computer-Assisted
10.An optimized segmentation of main vessel in coronary angiography images via removing the overlapping pacemaker.
Yi HUANG ; Hongbo YANG ; Menghua XIA ; Yanan QU ; Yi GUO ; Guohui ZHOU ; Feng ZHANG ; Yuanyuan WANG
Journal of Biomedical Engineering 2022;39(5):853-861
Coronary angiography (CAG) as a typical imaging modality for the diagnosis of coronary diseases hasbeen widely employed in clinical practices. For CAG-based computer-aided diagnosis systems, accurate vessel segmentation plays a fundamental role. However, patients with bradycardia usually have a pacemaker which frequently interferes the vessel segmentation. In this case, the segmentation of vessels will be hard. To mitigate interferences of pacemakers and then extract main vessels more effectively in CAG images, we propose an approach. At first, a pseudo CAG (pCAG) image is generated through a part of a CAG sequence, in which the pacemaker exists. Then, a local feature descriptor is employed to register the relative location of pacemaker between the pCAG image and the target CAG image. Finally, combining the registration result and segmentation results of main vessels and pacemaker, interferences of pacemaker are removed and the segmentation of main vessels is improved. The proposed method is evaluated based on 11 CAG images with pacemakers acquired in clinical practices. An optimization ratio of the Dice coefficient is 12.04%, which demonstrates that our method can remove overlapping pacemakers and achieve the improvement of main vessel segmentation in CAG images.Our method can further become a helpful component in a CAG-based computer-aided diagnosis system, improving its diagnosis accuracy and efficiency.
Humans
;
Coronary Angiography/methods*
;
Diagnosis, Computer-Assisted
;
Pacemaker, Artificial
;
Image Processing, Computer-Assisted/methods*
;
Algorithms

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