Analysis of Salivary Bacterial Community by Direct PCR and High Resolution Melting Curve and Its Forensic Applications.
10.12116/j.issn.1004-5619.2021.511006
- Author:
Rui YANG
1
;
Jiong CHEN
1
;
Gui-Sen ZHAO
1
Author Information
1. School of Forensic Medicine, Henan University of Science and Technology, Luoyang 471023, Henan Province, China.
- Publication Type:Journal Article
- Keywords:
bacterial community;
forensic genetics;
high resolution melting;
polymerase chain reaction (PCR);
saliva
- MeSH:
Humans;
Polymerase Chain Reaction/methods*;
Bacteria/genetics*;
DNA, Ribosomal;
Forensic Medicine;
Genotype;
Coloring Agents
- From:
Journal of Forensic Medicine
2022;38(6):709-718
- CountryChina
- Language:English
-
Abstract:
OBJECTIVES:To develop a rapid test for salivary bacterial community based on direct PCR (dPCR) and high resolution melting (HRM) curve analysis, to evaluate its application value in forensic medicine.
METHODS:The salivary bacteria were collected by centrifugation and then resuspended in Tris-EDTA (TE) buffer, and directly used as the template for amplification and HRM curve analysis (dPCR-HRM) of the 16S rDNA V4 region. The genotype confidence percentage (GCP) of the HRM profiles compared with the reference profile was calculated. The template DNA was extracted by traditional kit and then PCR-HRM (namely kPCR-HRM) was used as reference to validate the feasibility of dPCR-HRM. The gradient dilution templates, population samples and simulated salivary stains were analyzed by dPCR-HRM to evaluate its sensitivity, typing ability and adaptability.
RESULTS:Using dPCR-HRM method, the HRM profiles of salivary bacterial community were obtained within 90 minutes. The GCP between dPCR-HRM and kPCR-HRM was greater than 95.85%. For general individuals, the HRM type of bacterial community could be determined with 0.29 nL saliva by dPCR-HRM. The 61 saliva samples could be divided into 10 types. The typing of salivary stains deposited within 8 h was the same as those of fresh saliva (GCP>90.83%).
CONCLUSIONS:dPCR-HRM technology can be used for rapid typing of salivary bacterial community, and has the advantage of low cost and simple operation.
