Identification of Bupleurum Seeds by ITS2 Genetic Barcoding and Seed Morphology
10.13422/j.cnki.syfjx.20201055
- VernacularTitle:应用ITS2条形码及种子形态鉴定柴胡属种子
- Author:
Wen-tao QI
1
;
Jian-chao LI
1
;
Chen WANG
1
;
Rong LUO
1
;
Chang-li LIU
1
Author Information
1. Beijing Key Laboratory of Traditional Chinese Medicine (TCM) Collateral Disease Theory Research, School of TCM, Capital Medical University, Beijing 100069, China
- Publication Type:Research Article
- Keywords:
Bupleurum;
seeds;
traditional morphology;
DNA barcoding;
ribosomal DNA internal transcribed spacer 2 (ITS2);
secondary structure;
polymerase chain reaction (PCR)
- From:
Chinese Journal of Experimental Traditional Medical Formulae
2020;26(11):170-177
- CountryChina
- Language:Chinese
-
Abstract:
Objective:To accurately identify Bupleurum seeds by traditional morphological identification method combined with DNA barcoding technique. Method:A total of 41 seed samples on the market were collected and 75 ribosomal DNA internal transcribed spacer 2 (ITS2) sequences of 15 varieties were downloaded from the GenBank database as experimental materials. The seeds were measured and observed by stereomicroscope and vernier caliper, and their 1 000-grain weights were calculated. Genomic DNA was extracted from the seeds and used as a template, and ITS2 sequences were amplified using polymerase chain reaction (PCR) and bidirectional sequencing. Species identification was conducted based on BLAST method, neighbor-joining (NJ) phylogenetic tree method, Kimura two-parameter model (K2P) genetic distance method, and secondary structure of ITS2 sequence. Result:There were slight differences in the length, width, cross-section, and 1 000-grain weight among Bupleurum seeds from different origins. The ITS2 sequences of B. chinense seeds had 2 intraspecific variable sites and 3 haplotypes, the maximum intraspecific genetic distance (0.009) was far smaller than the minimum interspecific genetic distance (0.032). B. chinense and B. scorzonerifolium in the NJ phylogenetic tree were clustered into independent branches with good monophyletic property. The secondary structure of ITS2 sequences could make up for the shortcomings of NJ tree in identifying variants. The collected 41 seeds included 30 B. chinense seeds, 3 B. scorzonerifolium seeds, 5 B. falcatum seeds, 2 B. marginatum var. stenophyllum seeds, and 1 B. smithii var. parvifolium seeds. Conclusion:The B. chinense seeds on the market have problems of diverse sources and chaotic origins. Based on the combination of ITS2 gentic barcoding and seed morphological identification, the Bupleurum seeds can be accurately identified, which provides scientific bases for establishing the quality standard of Bupleurum seeds, standardizing the cultivation of B. chinense, and solving the quality problems of B. chinense from the source, and provides a reference for the accurate identification of other medicinal plant seeds or seed medicinal materials.
