Differential expression and bioinformatics analysis of epsin3 in colorectal cancer
10.16098/j.issn.0529-1356.2022.04.014
- Author:
Li-Chun XIANG
1
;
Xiao-Ye JIANG
1
;
Xue-Nuo CHEN
1
;
Zheng JIANG
1
;
Zhong-Xiang JIANG
2
Author Information
1. Department of Gastroenterologj, The First Affiliated Hospital of Chongqing Medical University
2. Department of Respiratory Medicine, Chongqing General Hospital
- Publication Type:Journal Article
- Keywords:
Bioinformatics;
Colony formation;
Colorectal cancer;
Epsin3;
Human;
Real-time PCR;
Scratch test
- From:
Acta Anatomica Sinica
2022;53(4):507-514
- CountryChina
- Language:Chinese
-
Abstract:
Objective To investigate the expression and significance of the adaptor protein epsin 3 (EPN3) in colorectal cancer in order to provide reference for further stud)' of EPN3. Methods GEPIA and GEDS were used to analyze the expression of EPN3 in colorectal cancer tissues and cells. SMART and cBioPortal databases were used to analyze the relationship between EPN3 gene metfrylation and cop)' number variation and its expression level. Metascape was used to complete analysis of gene ontology functional annotation and related pathways of EPN3 related genes and BioPlex was applied to construct a protein network in HCT116 cell. Thirteen pairs of colorectal cancer adjacent tissue and cancer tissue specimens were collected, and EPN3 mRNA expression were detected by Real-time PCR. The effect of abilities of cell proliferation, clone formation and migration via silencing EPN3 in HCT116 and HT29 were observed. Results GEPIA, GEDS, SMART and cBioPortal analyses showed that EPN3 was highly expressed in colorectal tumor tissues (P<0. 01), and was related to methylation and copy number variation. The enrichment result of EPN3 related genes showed that it was mainly related to cell adhesion. And a protein interaction network constructed by CCDC130, TNFAIP1, PHGDH, EPN2, etc. was related to protein ubiquitination. Real-time PCR result showed that EPN3 was highly expressed in tumor tissues (P<0. 05). Silencing EPN3 inhibited the proliferation, clony formation and migration abilities of HCT116 and HT29 cells. Conclusion EPN3 is highly expressed in colorectal cancer tissues and is related to cell adhesion and protein ubiquitination. Down-regulated EPN3 can inhibit abilities of proliferation, clony formation and migration of HCT116 and HT29 cells, and this could provide a reference for further research on EPN3.
