1.Inhibitory Effects of the Deep Underground Low Background Radiation Environment on the Proliferation and Migration of NP69 Human Nasopharyngeal Epithelial Cells and the Underlying Mechanisms
Zhizhen HAO ; Can LI ; Ling WANG ; Yuhao ZOU ; Jirui WEN ; Jiang WU ; Xuehong WAN ; Feng LIU ; Jifeng LIU
Journal of Sichuan University (Medical Sciences) 2025;56(5):1336-1343
Objective To investigate the effects of low background radiation environments in deep underground settings on the biological behavior of NP69 human nasopharyngeal epithelial cells(NP69 cells)and the underlying molecular mechanisms.Methods A parallel control experimental design was adopted and NP69 cells were synchronously cultured in settings of three underground depths at the China in situ Deep-Underground Facility&Life Observatory(DeUFO)—ground level(DeUFO-0 m),1 000 m underground(DeUFO-1 000 m),and 1 500 m underground(DeUFO-1 500 m).Changes in cell proliferation and migration capabilities were assessed using the Cell Counting Kit-8(CCK-8)assay and scratch assay,respectively.High-throughput RNA sequencing(RNA-Seq)was performed to identify differentially expressed genes(DEGs).Functional annotation and pathway enrichment analysis of the DEGs were performed using the Gene Ontology(GO)and Kyoto Encyclopedia of Genes and Genomes(KEGG)databases.Results CCK-8 assay revealed that,after 72 h of culture,the absorbance value of the DeUFO-0 m group was 1.35 times and 1.27 times those of the those of the DeUFO-1 000 m and DeUFO-1 500 m groups,respectively(both P<0.000 1).After 96 h of culture,the absorbance value of the DeUFO-0 m group was 1.52 times and 1.41 times those of the DeUFO-1 000 m and DeUFO-1 500 m groups,respectively(both P<0.000 1).Colony formation assays revealed that the number of cell colonies in the DeUFO-0 m group was 1.59 times and 1.27 times those in the DeUFO-1 000 m group and DeUFO-1 500 m group,respectively(both P<0.001).The scratch assay revealed that the 36-hour wound healing rate of the DeUFO-0 m group was 2.22 times and 4.00 times those of the DeUFO-1 000 m group and DeUFO-1 500 m group,respectively(both P<0.000 1).Transwell assays revealed that the number of migrating cells in the DeUFO-0 m group was 2.08 times and 2.56 times those in the DeUFO-1 000 m group and DeUFO-1 500 m group,respectively(both P<0.000 1).Transcriptome sequencing analysis revealed consistent upregulation of CELF2,CELF4,CGB8,GRHL2,and DMRTA2 genes in the DeUFO-1 000 m and DeUFO-1 500 m groups.Pathway enrichment analysis indicated significant enrichment of extracellular matrix(ECM)remodeling-associated pathways and gene expression regulation pathways in the experimental groups(false discovery rate[FDR]<0.05).Conclusion The low background radiation environment in deep underground settings suppresses the proliferation and migration activities of NP69 cells by mediating ECM remodeling and post-transcriptional regulatory mechanisms through the regulation of target genes such as the CELF family.This study provides experimental evidence for establishing a dose-response relationship between environmental radiation and cellular effects.
2.Drug resistance genes and efflux pump phenotypes in clinically isolated Acinetobacter baumannii
Li LI ; Zhizhen ZHANG ; Xiaoling ZOU ; Xu WANG ; Jiao DAI
Chinese Journal of Nosocomiology 2025;35(11):1707-1710
OBJECTIVE To investigate the epidemiological characteristics of Acinetobacter baumannii,detect the distribution of its β-lactamase genes and efflux pump genes,and analyze the relationship between β-lactamase genes and efflux pump genes and the drug resistance of the strains.METHODS Acinetobacter baumannii strains clinically isolated from Jun.2021 to Jun.2022 in Dujiangyan People's Hospital were collected and tested for anti-microbial resistance.Polymerase chain reaction(PCR)technology was used to amplify the β-lactamase genes as well as the efflux pump genes of Acinetobacter baumannii.PaβN was performed to test the efflux pump pheno-type.RESULTS The drug resistance rates of imipenem-resistant Acinetobacter baumannii(IRAB)to cefopera-zone,ceftazidime,cefepime,imipenem,and meropenem were 14.29%,85.71%,91.43%,100.00%and 100.00%,respectively,significantly higher than those of imipenem-sensitive Acinetobacter baumannii(ISAB)(P<0.05).The detection rates of OXA-23,OXA-51,and IMP-1 in IRAB strains were 45.71%,62.86%and 65.71%,respectively,higher than those in ISAB strains(P<0.05).The detection rates of the efflux pump genes adeB,adeS,and adeG in IRAB strains were 60.00%,71.43%and 68.57%,respectively,higher than those in ISAB strains(P<0.05).In addition,the positive rate of the efflux pump phenotype in the IRAB group was 54.29%,significantly higher than 7.69%in the ISAB group(P<0.001).CONCLUSION The detection rates of β-lactamase genes(such as OXA-23,OXA-51 and IMP-1 etc.)and efflux pump genes(adeB,adeS and adeG)in IRAB are significantly higher than those in the ISAB,and the positive rate of the efflux pump phenotype in IRAB is higher,which confirms that β-lactamase genes and efflux pump genes are important mechanisms of drug resistance in the bacterium.
3.Drug resistance genes and efflux pump phenotypes in clinically isolated Acinetobacter baumannii
Li LI ; Zhizhen ZHANG ; Xiaoling ZOU ; Xu WANG ; Jiao DAI
Chinese Journal of Nosocomiology 2025;35(11):1707-1710
OBJECTIVE To investigate the epidemiological characteristics of Acinetobacter baumannii,detect the distribution of its β-lactamase genes and efflux pump genes,and analyze the relationship between β-lactamase genes and efflux pump genes and the drug resistance of the strains.METHODS Acinetobacter baumannii strains clinically isolated from Jun.2021 to Jun.2022 in Dujiangyan People's Hospital were collected and tested for anti-microbial resistance.Polymerase chain reaction(PCR)technology was used to amplify the β-lactamase genes as well as the efflux pump genes of Acinetobacter baumannii.PaβN was performed to test the efflux pump pheno-type.RESULTS The drug resistance rates of imipenem-resistant Acinetobacter baumannii(IRAB)to cefopera-zone,ceftazidime,cefepime,imipenem,and meropenem were 14.29%,85.71%,91.43%,100.00%and 100.00%,respectively,significantly higher than those of imipenem-sensitive Acinetobacter baumannii(ISAB)(P<0.05).The detection rates of OXA-23,OXA-51,and IMP-1 in IRAB strains were 45.71%,62.86%and 65.71%,respectively,higher than those in ISAB strains(P<0.05).The detection rates of the efflux pump genes adeB,adeS,and adeG in IRAB strains were 60.00%,71.43%and 68.57%,respectively,higher than those in ISAB strains(P<0.05).In addition,the positive rate of the efflux pump phenotype in the IRAB group was 54.29%,significantly higher than 7.69%in the ISAB group(P<0.001).CONCLUSION The detection rates of β-lactamase genes(such as OXA-23,OXA-51 and IMP-1 etc.)and efflux pump genes(adeB,adeS and adeG)in IRAB are significantly higher than those in the ISAB,and the positive rate of the efflux pump phenotype in IRAB is higher,which confirms that β-lactamase genes and efflux pump genes are important mechanisms of drug resistance in the bacterium.
4.Exploring the Mechanism and Experimental Verification of Alhagi Sparsifolia Shap.in Treating Sepsis Based on Network Pharmacology
Zhizhen ZOU ; Xiling DENG ; Yunlai WANG ; Jie ZHANG ; Jiangtao DONG ; Xiaoling LIU ; Su LIANG ; Ju WANG ; Hui ZHANG ; Jiangdong WU ; Le ZHANG ; Fang WU ; Wanjiang ZHANG
World Science and Technology-Modernization of Traditional Chinese Medicine 2023;25(9):3024-3036
Objective Network pharmacology and molecular docking and molecular dynamics techniques were used to investigate the mechanism of action of Alhagi sparsifolia Shap.in the treatment of sepsis and to perform animal experimental verification.Methods First,we screened the effective ingredients and their action targets of Alhagi sparsifolia Shap.,meanwhile,screened relevant action targets for the treatment of sepsis,constructed a protein interaction(PPI)network,and performed topology analysis to draw a TCM disease target network diagram.Second,Kyoto Encyclopedia of genes and genomes enrichment analysis was performed for core targets in the network diagram,along with gene ontology functional enrichment analysis.This was followed by molecular docking and molecular dynamics simulation experiment validation of the core targets.Finally,mice were used for the verification of animal experiments.Results Thirty active components of Alhagi sparsifolia Shap.were screened out,and the top 5 ranked by degree value were quercetin,(-)-epigallocatechin,(-)-Epigallocatechin Gallate,genistein,kaempferol and epigallocatechin with 196 action targets;2144 disease-related targets for sepsis,105 targets for Alhagi sparsifolia Shap.-sepsis intersection,and the core targets were TNF,IL-6,AKT1,VEGFA,CASP3,IL-1β Et al.PI3K-Akt,TNF,HIF-1,AGE-RAGE,IL-17 and other signaling pathways are involved to mediate inflammatory responses,apoptosis and other biological processes to exert therapeutic effects on sepsis.Molecular docking results showed that camelina flavanoids bound equally well to each key target,among which the conformations with the lowest binding energy were(-)-Epigallocatechin Gallate-IL-6 and quercetin-IL-6.Molecular dynamics simulations were performed on the two pairs of complexes,and the results indicated that the stable binding could be achieved through a combination of electrostatic,van der Waals potential,and hydrogen bonding interactions.Animal experiments confirmed that Alhagi sparsifolia Shap.could inhibit the activation of PI3K/Akt signaling pathway,decrease the protein expression of Caspase-3,VEGF and reduced peripheral blood inflammatory factors secretion of TNF-α、IL-1βand IL-6,alleviating inflammatory injury in tissues and organs.Conclusion The therapeutic effect of Alhagi sparsifolia Shap.on sepsis is achieved through multi biological processes,multi targets,and multi pathways.It provides a certain theoretical basis for the clinical application of camel spines as well as sepsis treatment.

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