1.A review on the screening methods for the discovery of natural antimicrobial peptides.
Bin YANG ; Hongyan YANG ; Jianlong LIANG ; Jiarou CHEN ; Chunhua WANG ; Yuanyuan WANG ; Jincai WANG ; Wenhui LUO ; Tao DENG ; Jialiang GUO
Journal of Pharmaceutical Analysis 2025;15(1):101046-101046
Natural antimicrobial peptides (AMPs) are promising candidates for the development of a new generation of antimicrobials to combat antibiotic-resistant pathogens. They have found extensive applications in the fields of medicine, food, and agriculture. However, efficiently screening AMPs from natural sources poses several challenges, including low efficiency and high antibiotic resistance. This review focuses on the action mechanisms of AMPs, both through membrane and non-membrane routes. We thoroughly examine various highly efficient AMP screening methods, including whole-bacterial adsorption binding, cell membrane chromatography (CMC), phospholipid membrane chromatography binding, membrane-mediated capillary electrophoresis (CE), colorimetric assays, thin layer chromatography (TLC), fluorescence-based screening, genetic sequencing-based analysis, computational mining of AMP databases, and virtual screening methods. Additionally, we discuss potential developmental applications for enhancing the efficiency of AMP discovery. This review provides a comprehensive framework for identifying AMPs within complex natural product systems.
2.Application and clinical outcomes of transperineal multi-modal image-fusion targeted prostate biopsy in a day-surgery model
Hong WANG ; Yifang TAO ; Feng LI ; Xu ZHAO ; Fang LIU ; Tingting ZHAO ; Jiaying YU ; Li XUE
Chinese Journal of Urology 2025;46(10):769-773
Objective:To explore the feasibility and clinical outcomes of transperineal prostate multimodal image fusion-targeted biopsy under the day surgery model.Methods:Clinical data of 258 patients who underwent transperineal prostate biopsy at the Second Affiliated Hospital of Xi’an Jiaotong University between December 2022 and June 2024 were retrospectively analyzed. Patients were divided into two groups,and the experimental group( n = 141)underwent transperineal prostate multi-modal image-fusion targeted biopsy in the day-surgery mode,with age of(70.0 ± 8.8)years,median prostate-specific antigen(PSA)level of 11.10(7.63?17.06)ng/ml,and median Prostate Imaging Reporting and Data System(PI-RADS)score of 4(3,5). The control group( n = 117)underwent traditional transperineal systematic biopsy,with age of(69.3 ± 7.4)years,median PSA of 25.20(16.18-54.40)ng/ml,and median PI-RADS score of 4(3,5). The experimental group was given the day surgery mode:preoperatively,multiparametric magnetic resonance imaging(mpMRI)of the prostate was multimodally fused with ultrasound images,the location of target lesions in the prostate was manually mapped,and a targeted biopsy plan was developed. Intraoperatively,under ultrasound guidance,precise puncture was performed at the lesion sites,followed by systematic biopsy. After the operation,the patients were observed for 4-6 hours,and could be discharged if there were no obvious abnormalities,with the total hospitalization time within 24 hours. For the control group,the conventional biopsy mode was used. Intraoperatively,under ultrasound guidance,the standard 12-core transperineal systematic biopsy protocol was adopted,and sampling was conducted according to the anatomical regions of the prostate(base,midportion,apex,transition zone,and peripheral zone)to cover the entire gland. Patients in this group required routine hospitalization,with a hospital stay of 3-5 days. Operative time,intraoperative pain Numerical Rating Scale(NRS)score,complications within one week postoperatively,treatment costs,overall prostate cancer detection rate,and clinically significant prostate cancer(csPCa,defined as Gleason score ≥ 7 or pathological stage ≥ T 2b)detection rate were compared between the two groups. Results:All procedures were successfully completed without special incidents. The operative time was(13.49 ± 2.00)min in the experimental group and(13.05 ± 2.89)min in the control group,showing no significant difference( P > 0.05). The intraoperative pain NRS scores were(3.01 ± 1.17)and(3.10 ± 1.25)in the experimental and control groups,respectively,with no significant difference( P > 0.05). Pathological examination revealed that the overall prostate cancer detection rates were 46.8%(66/141)in the experimental group and 42.7%(50/117)in the control group,while the csPCa detection rates were 35.5%(50/141)and 31.6%(37/117),respectively. The differences were not statistically significant( P > 0.05). The complication rate was 6.4%(9/141)in the experimental group(including 2 cases of acute urinary retention,3 hematuria,3 fever,and 1 sepsis)and 6.0%(7/117)in the control group(including 3 acute urinary retention,1 hematuria,2 fever,and 1 sepsis),with no significant difference( P > 0.05). All complications improved after symptomatic treatment. The treatment costs were(4 063.25 ± 67.26)yuan in the experimental group and(5 185.14 ± 469.15)yuan in the control group,demonstrating a statistically significant difference( P < 0.05). Conclusions:Transperineal prostate multimodal image fusion-targeted biopsy can be safely performed under the day surgery model,offering advantages including a relatively high detection rate for csPCa,low complication rate,and better cost-effectiveness.
3.Application and clinical outcomes of transperineal multi-modal image-fusion targeted prostate biopsy in a day-surgery model
Hong WANG ; Yifang TAO ; Feng LI ; Xu ZHAO ; Fang LIU ; Tingting ZHAO ; Jiaying YU ; Li XUE
Chinese Journal of Urology 2025;46(10):769-773
Objective:To explore the feasibility and clinical outcomes of transperineal prostate multimodal image fusion-targeted biopsy under the day surgery model.Methods:Clinical data of 258 patients who underwent transperineal prostate biopsy at the Second Affiliated Hospital of Xi’an Jiaotong University between December 2022 and June 2024 were retrospectively analyzed. Patients were divided into two groups,and the experimental group( n = 141)underwent transperineal prostate multi-modal image-fusion targeted biopsy in the day-surgery mode,with age of(70.0 ± 8.8)years,median prostate-specific antigen(PSA)level of 11.10(7.63?17.06)ng/ml,and median Prostate Imaging Reporting and Data System(PI-RADS)score of 4(3,5). The control group( n = 117)underwent traditional transperineal systematic biopsy,with age of(69.3 ± 7.4)years,median PSA of 25.20(16.18-54.40)ng/ml,and median PI-RADS score of 4(3,5). The experimental group was given the day surgery mode:preoperatively,multiparametric magnetic resonance imaging(mpMRI)of the prostate was multimodally fused with ultrasound images,the location of target lesions in the prostate was manually mapped,and a targeted biopsy plan was developed. Intraoperatively,under ultrasound guidance,precise puncture was performed at the lesion sites,followed by systematic biopsy. After the operation,the patients were observed for 4-6 hours,and could be discharged if there were no obvious abnormalities,with the total hospitalization time within 24 hours. For the control group,the conventional biopsy mode was used. Intraoperatively,under ultrasound guidance,the standard 12-core transperineal systematic biopsy protocol was adopted,and sampling was conducted according to the anatomical regions of the prostate(base,midportion,apex,transition zone,and peripheral zone)to cover the entire gland. Patients in this group required routine hospitalization,with a hospital stay of 3-5 days. Operative time,intraoperative pain Numerical Rating Scale(NRS)score,complications within one week postoperatively,treatment costs,overall prostate cancer detection rate,and clinically significant prostate cancer(csPCa,defined as Gleason score ≥ 7 or pathological stage ≥ T 2b)detection rate were compared between the two groups. Results:All procedures were successfully completed without special incidents. The operative time was(13.49 ± 2.00)min in the experimental group and(13.05 ± 2.89)min in the control group,showing no significant difference( P > 0.05). The intraoperative pain NRS scores were(3.01 ± 1.17)and(3.10 ± 1.25)in the experimental and control groups,respectively,with no significant difference( P > 0.05). Pathological examination revealed that the overall prostate cancer detection rates were 46.8%(66/141)in the experimental group and 42.7%(50/117)in the control group,while the csPCa detection rates were 35.5%(50/141)and 31.6%(37/117),respectively. The differences were not statistically significant( P > 0.05). The complication rate was 6.4%(9/141)in the experimental group(including 2 cases of acute urinary retention,3 hematuria,3 fever,and 1 sepsis)and 6.0%(7/117)in the control group(including 3 acute urinary retention,1 hematuria,2 fever,and 1 sepsis),with no significant difference( P > 0.05). All complications improved after symptomatic treatment. The treatment costs were(4 063.25 ± 67.26)yuan in the experimental group and(5 185.14 ± 469.15)yuan in the control group,demonstrating a statistically significant difference( P < 0.05). Conclusions:Transperineal prostate multimodal image fusion-targeted biopsy can be safely performed under the day surgery model,offering advantages including a relatively high detection rate for csPCa,low complication rate,and better cost-effectiveness.
4.Research Progress on the Application of Medical Knowledge Graph in the Field of Stroke in China
Yi TAO ; Qingyue JIA ; Xiaoman MIN ; Jiazheng LIU ; Yifang SHANG ; Ning SUN ; Wenqiang CUI ; Hongyun WU
Journal of Medical Informatics 2024;45(10):28-32
Purpose/Significance To deeply analyze the research progress on the application of medical knowledge graph in the field of stroke,to discuss the problems of the development of stroke knowledge graph in China,and to put forward suggestions for the construc-tion of stroke knowledge graph.Method/Process By reviewing and analyzing the relevant literature,the application of medical knowledge graph in the field of stroke is sorted out and summarized.Result/Conclusion There are still many deficiencies in the development of stroke knowledge graph in China,and in the future,in-depth research can be carried out from four aspects,namely,expanding the ap-plication scope of knowledge graph,promoting the fusion of knowledge graph,developing more efficient algorithms,and upgrading to cog-nitive graph by joint artificial intelligence(AI).
5.Study on the mechanism of miRNA-20a in regulating lipopolysaccharide-induced pyroptosis and inflammation of A549 cells
Huixian TAO ; Muzi WANG ; Yan GUO ; Yunsu ZOU ; Zhitao LU ; Yifang DING ; Xiaoguang ZHOU ; Weidong XU
Chinese Journal of Neonatology 2023;38(2):107-114
Methods:Cultured human alveolar epithelial A549 cells were assigned into LPS group and blank control group. LPS group was stimulated with LPS and adenosine triphosphate to induce pyroptosis and inflammation. A549 cells were divided into 4 groups: miR-20a mimics group, mimics-negative control (NC) group, inhibitor group and inhibitor-NC group. MiRNA-20a mimics, mimics-NC, inhibitor, and inhibitor-NC were transfected respectively into A549 cells, and after 24 h, the cells were collected to verify transfection efficiency by qPCR. MiRNA-20a mimics and the constructed TLR4-3'UTR double luciferase reporter plasmid were co-transfected into A549 cells, and luciferase activity was analyzed. MiRNA-20a mimics/inhibitors were transfected into A549 cells, and then the cells were stimulated by LPS for 8 h followed by adenosine triphosphate for 30 min. QPCR, Western Blot and ELISA were used to detect the expression of GSDMD, inflammatory factors (ASC, NLRP3, Caspase-1, IL-1β) and Signaling molecules (TLR4、NF-κB) in A549 cells at mRNA level and protein level. Immunofluorescence was used to detect the expression of TLR4 in the A549 cells and NF-κB in the nucleus of A549 cells after transfecting with miRNA-20a mimics/inhibitor.Results:The mRNA and protein expression of pyroptosis marker molecule (GSDMD) and inflammatory factors (ASC, NLRP3, Caspase-1, IL-1β) in A549 cells stimulated with LPS were significantly higher than those in the blank control group, and the differences were statistically significant ( P<0.05). The expression of miRNA-20 in the mimics group was significantly higher than that in the mimic-NC group ( P<0.05), while the expression of miRNA-20a in the inhibitor group was lower than that in the inhibitor-NC group ( P<0.01). The double luciferase reporter gene experiment showed that the relative fluorescence value of the co-transfection group for TLR4-3'UTR-WT and miRNA-20a mimics was significantly lower than the co-transfection group for TLR4-3'UTR-WT and miRNA-20a mimics-NC ( P<0.05). The mRNA and protein levels of pyroptosis marker molecule (GSDMD) , inflammatory factors (ASC, NLRP3, Caspase-1, IL-1β) and signaling molecules (TLR4, NF-κB) were decreased in the mimics group compared to the mimics-NC group, and increased in inhibitor group compared to inhibitor-NC group. Conclusions:miRNA-20a may inhibit LPS-induced pyroptosis and inflammation of A549 cells via TLR4/NF-κB signal pathway.Objetive:To explore the potential role of miRNA-20a in lipopolysaccharide (LPS) induced pyroptosis and inflamation of human alveolar epithelial A549 cells and its regulation mechanisim.
6.Diagnosis and treatment of esophageal foreign body: Operation or endoscopy?
Menghua XUE ; Juan WANG ; Jie QI ; Yifang ZHU ; Wuping WANG ; Tao JIANG ; Qiang LU
Chinese Journal of Clinical Thoracic and Cardiovascular Surgery 2022;29(02):206-210
Objective To summarize our experience in the treatment of esophageal foreign bodies. Methods A retrospective analysis of 149 patients of esophageal foreign bodies in the Second Affiliated Hospital of Air Force Military Medical University from December 2011 to May 2019 was carried out, including 75 (50.3%) females and 74 (49.7%) males with an average age of 57 (2-85) years. Results There were 146 patients confirmed by endoscopy, and 3 patients were not found foreign body. Among the confirmed patients, 127 patients were removed by gastroscope and 19 patients were treated by operation. Esophageal foreign bodies are mainly related to the types of food. Jujube seed is the most common food foreign body in the northwest China. The injury rate of mucosal was 47.54% within 48 hours. The complication rate of taking out the foreign body after 48 hours was 100.0%. The success rate by endoscopy decreased (P=0.005), if the foreign body combined perforation. There was no statistical difference between the neck and other parts when using ultra-fine gastroscope (P=0.157). Conclusion The sharper the foreign body is, the easier the perforation is. The earlier the foreign body is removed, the less complications are. The size of the foreign body determines the difficulty of endoscopic removal. Gastroscopy is the first choice for diagnosis and treatment, especially ultra-fine gastroscopy, and the foreign bodies that cannot be removed by endoscopy need surgical treatment.
7.Effects of vitamin E on sperm quality of rats exposed to high pressure in diving
Yifang WEI ; Jie DAI ; Tao YANG ; Yiqun FANG ; Xing LIU ; Pengfang SHI ; Yongsheng BI ; Li CHEN ; Mengyu ZHANG
Chinese journal of nautical medicine and hyperbaric medicine 2022;29(5):632-635
Objective:To investigate the effects of vitamin E on sperm quality of rats exposed to high pressure in diving.Methods:A total of 16 male rats were randomly divided into solvent control group and vitamin E group according to the random number table method,with 8 rats in each group. Before exposing to high pressure,the vitamin E group was given 100 mg·kg -1·d -1 of vitamin E by gavage,while the solvent control group was given the same amount of corn oil by gavage. The rats in both groups were exposed to air diving at a depth of 60 meters for 1 hour each time for 30 consecutive days,and were sacrificed immediately after the last exposure. The morphology of rat testis was observed by HE staining. The density and motility of rat sperms were observed under a microscope,and the DNA fragmentation index(DFI)of rat sperms was detected by flow cytometry. Results:Compared with the solvent control group,there was no significant changes in testicular morphology or sperm density in the vitamin E group( P>0.05);while the sperm motility and DFI in the vitamin E group were much better than those in the solvent control group,and the differences were statistically significant( P<0.05). Conclusion:Vitamin E can effectively prevent DNA damage and sperm motility decline in male rats exposed to high pressure in diving.
8.Effects of vitamin E on sperm quality of rats exposed to high pressure in diving
Yifang WEI ; Jie DAI ; Tao YANG ; Yiqun FANG ; Xing LIU ; Pengfang SHI ; Yongsheng BI ; Li CHEN ; Mengyu ZHANG
Chinese journal of nautical medicine and hyperbaric medicine 2022;29(5):632-635
Objective:To investigate the effects of vitamin E on sperm quality of rats exposed to high pressure in diving.Methods:A total of 16 male rats were randomly divided into solvent control group and vitamin E group according to the random number table method,with 8 rats in each group. Before exposing to high pressure,the vitamin E group was given 100 mg·kg -1·d -1 of vitamin E by gavage,while the solvent control group was given the same amount of corn oil by gavage. The rats in both groups were exposed to air diving at a depth of 60 meters for 1 hour each time for 30 consecutive days,and were sacrificed immediately after the last exposure. The morphology of rat testis was observed by HE staining. The density and motility of rat sperms were observed under a microscope,and the DNA fragmentation index(DFI)of rat sperms was detected by flow cytometry. Results:Compared with the solvent control group,there was no significant changes in testicular morphology or sperm density in the vitamin E group( P>0.05);while the sperm motility and DFI in the vitamin E group were much better than those in the solvent control group,and the differences were statistically significant( P<0.05). Conclusion:Vitamin E can effectively prevent DNA damage and sperm motility decline in male rats exposed to high pressure in diving.
9.A pathological report of three COVID-19 cases by minimal invasive autopsies
Xiaohong YAO ; Tingyuan LI ; Zhicheng HE ; Yifang PING ; Huawen LIU ; Shicang YU ; Huaming MOU ; Lihua WANG ; Huarong ZHANG ; Wenjuan FU ; Tao LUO ; Feng LIU ; Qiaonan GUO ; Cong CHEN ; Hualiang XIAO ; Haitao GUO ; Shuang LIN ; Dongfang XIANG ; Yu SHI ; Guangqiang PAN ; Qingrui LI ; Xia HUANG ; Yong CUI ; Xizhao LIU ; Wei TANG ; Pengfei PAN ; Xuequan HUANG ; Yanqing DING ; Xiuwu BIAN
Chinese Journal of Pathology 2020;49(5):411-417
Objective:To investigate the pathological characteristics and the clinical significance of novel coronavirus (2019-nCoV)-infected pneumonia (termed by WHO as coronavirus disease 2019, COVID-19).Methods:Minimally invasive autopsies from lung, heart, kidney, spleen, bone marrow, liver, pancreas, stomach, intestine, thyroid and skin were performed on three patients died of novel coronavirus pneumonia in Chongqing, China. Hematoxylin and eosin staining (HE), transmission electron microcopy, and histochemical staining were performed to investigate the pathological changes of indicated organs or tissues. Immunohistochemical staining was conducted to evaluate the infiltration of immune cells as well as the expression of 2019-nCoV proteins. Real time PCR was carried out to detect the RNA of 2019-nCoV.Results:Various damages were observed in the alveolar structure, with minor serous exudation and fibrin exudation. Hyaline membrane formation was observed in some alveoli. The infiltrated immune cells in alveoli were majorly macrophages and monocytes. Moderate multinucleated giant cells, minimal lymphocytes, eosinophils and neutrophils were also observed. Most of infiltrated lymphocytes were CD4-positive T cells. Significant proliferation of type Ⅱ alveolar epithelia and focal desquamation of alveolar epithelia were also indicated. The blood vessels of alveolar septum were congested, edematous and widened, with modest infiltration of monocytes and lymphocytes. Hyaline thrombi were found in a minority of microvessels. Focal hemorrhage in lung tissue, organization of exudates in some alveolar cavities, and pulmonary interstitial fibrosis were observed. Part of the bronchial epithelia were exfoliated. Coronavirus particles in bronchial mucosal epithelia and type Ⅱ alveolar epithelia were observed under electron microscope. Immunohistochemical staining showed that part of the alveolar epithelia and macrophages were positive for 2019-nCoV antigen. Real time PCR analyses identified positive signals for 2019-nCoV nucleic acid. Decreased numbers of lymphocyte, cell degeneration and necrosis were observed in spleen. Furthermore, degeneration and necrosis of parenchymal cells, formation of hyaline thrombus in small vessels, and pathological changes of chronic diseases were observed in other organs and tissues, while no evidence of coronavirus infection was observed in these organs.Conclusions:The lungs from novel coronavirus pneumonia patients manifest significant pathological lesions, including the alveolar exudative inflammation and interstitial inflammation, alveolar epithelium proliferation and hyaline membrane formation. While the 2019-nCoV is mainly distributed in lung, the infection also involves in the damages of heart, vessels, liver, kidney and other organs. Further studies are warranted to investigate the mechanism underlying pathological changes of this disease.
10. Modularized teaching program on the clinical research training for pathological residents
Yu SHI ; Tao LUO ; Yangfan LÜ ; Yong LIN ; Zhicheng HE ; Haiqing ZHANG ; Xiaohui YIN ; Rui TANG ; Feng WU ; Weiqi DANG ; Jing YANG ; Yifang PING ; Xiuwu BIAN ; Xiaochu YAN ; Xiaohong YAO
Chinese Journal of Medical Education Research 2019;18(10):1025-1028
To meet the requirement of pathological practice and development, we systematically analyzed the situation of pathological residents training and the importance of initiating the clinical scientific research training. Additionally, we proposed the principle and implementation strategy for clinical scientific research training. According to features of pathological practice, we employed the modularized teaching to divide the training courses into several modules: discussion module for clinical pathology, lecture module for advanced research, and training modules for basic scientific theory, technology and writing skill. With these approaches, the systematic and structured system of standardized residents training is implemented to improve the clinical research ability of pathological residents.

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