1.Immunological mechanism of non-obstructive azoospermia: An exploration based on bioinformatics and machine learning.
Shu-Qiang HUANG ; Zhi-Hong LI ; Cui-Yu TAN ; Miao-Qi CHEN ; Xiao-Jun YUAN ; Wan-Ru CHEN ; Luo-Yao YANG ; Xu-Nuo FENG ; Cai-Rong CHEN ; Qiu-Xia YAN
National Journal of Andrology 2024;30(12):1059-1067
OBJECTIVE:
To explore the immunological mechanisms underlying spermatogenetic malfunction in patients with non-obstructive azoospermia (NOA) based on bioinformatics and machine learning, and to screen out the key genes associated with spermatogenesis failure.
METHODS:
NOA-related datasets were obtained from the GEO database, and the differentially expressed genes identified by differential analysis and weighted gene co-expression network analysis (WGCNA). A model of spermatogenesis scoring was established for analysis of the immunological microenvironment and cell interaction networks related to spermatogenesis failure. The key genes were screened out by machine learning, followed by analysis of their correlation with T cells and macrophages. An NOA mouse model was constructed for validation of transcriptome sequencing.
RESULTS:
Seventy-five differentially expressed genes were identified for the establishment of the spermatogenesis scoring model. The low spermatogenesis score group showed a higher infiltration of the immune cells, with an increased proportion of T cells and macrophages and a correlation of cell interaction signals with immunity. SOX30, KCTD19, ASRGL1 and DRC7 were identified by machine learning as the key genes related to spermatogenesis, with down-regulated expressions in the NOA group, and their expression levels negatively correlated with the infiltration of T cells and macrophages. The accuracy of the spermatogenesis scoring and machine learning models, as well as the trend of the expression levels of the key genes, was successfully validated with the transcriptome sequencing data on the NOA mouse testis.
CONCLUSION
The development of NOA is closely associated with enhanced immunological microenvironment in the testis. T cells and macrophages may play important roles in spermatogenesis failure. SOX30, KCTD19, ASRGL1 and DRC7 are potential biomarkers for the diagnosis and treatment of NOA.
Male
;
Azoospermia/genetics*
;
Machine Learning
;
Animals
;
Computational Biology
;
Mice
;
Humans
;
Spermatogenesis/genetics*
;
Gene Expression Profiling
;
Macrophages/immunology*
;
Gene Regulatory Networks
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T-Lymphocytes/immunology*
;
Transcriptome
2.A third dose of inactivated vaccine augments the potency, breadth, and duration of anamnestic responses against SARS-CoV-2.
Zijing JIA ; Kang WANG ; Minxiang XIE ; Jiajing WU ; Yaling HU ; Yunjiao ZHOU ; Ayijiang YISIMAYI ; Wangjun FU ; Lei WANG ; Pan LIU ; Kaiyue FAN ; Ruihong CHEN ; Lin WANG ; Jing LI ; Yao WANG ; Xiaoqin GE ; Qianqian ZHANG ; Jianbo WU ; Nan WANG ; Wei WU ; Yidan GAO ; Jingyun MIAO ; Yinan JIANG ; Lili QIN ; Ling ZHU ; Weijin HUANG ; Yanjun ZHANG ; Huan ZHANG ; Baisheng LI ; Qiang GAO ; Xiaoliang Sunney XIE ; Youchun WANG ; Yunlong CAO ; Qiao WANG ; Xiangxi WANG
Protein & Cell 2024;15(12):930-937
3.Association between smoking status and mortality risk among elderly people aged 60 and above in Beijing City.
Shi Min CHEN ; Sheng Shu WANG ; Shao Hua LIU ; Xue Hang LI ; Zhi Qiang LI ; Hao Wei LI ; Rong Rong LI ; Jian Hua WANG ; Shan Shan YANG ; Miao LIU ; Yao HE
Chinese Journal of Preventive Medicine 2023;57(9):1403-1411
Objective: To examine the association between smoking status and related mortality among elderly people aged 60 and above in urban and rural areas of Beijing City. Methods: Based on Beijing City Elderly Comprehensive Health Cohort Study from 2009 to 2014, a total of 4 499 eligible older adults included in the baseline survey were followed up and investigated to collect information on survival and death. The Cox proportional hazards regression model was used to estimate hazard ratios (HRs) and corresponding 95% confidence intervals (CIs), and the dose-response relationship was estimated between the smoking index, the years of quitting and mortality. Results: The median (IQR) age of 4 499 subjects was 70.00 (10.00) years old, including 1 814 (40.32%) males. The proportion of non-smokers, former smokers and current smokers was 69.50% (3 127/4 499), 13.20% (594/4 499) and 17.30% (778/4 499), respectively. After adjusting for confounding factors such as demographic and sociological characteristics, lifestyle, etc., the results of multivariate Cox regression analysis showed that, compared to non-smokers, former smokers had a 30.6% increased risk of all-cause mortality [HR (95%CI): 1.306 (1.043-1.636)] and the HR (95%CI) of all-cause, malignant tumor and lung cancer mortality among current smokers has increased by 50.0% [HR (95%CI): 1.500 (1.199-1.877)], 80.3% [HR (95%CI): 1.803 (1.226-2.652)] and 212.6% [HR (95%CI): 3.126 (1.626-6.012)], respectively. The smoking index was positively associated with the increased risk of all-cause, malignant tumor and lung cancer mortality, while the years of smoking cessation were negatively associated with that risk (P<0.05). Conclusion: Smoking is associated with tobacco-related mortality among elderly people in Beijing City.
Aged
;
Male
;
Humans
;
Child
;
Female
;
Beijing
;
Cohort Studies
;
Lung Neoplasms
;
Smoking
;
Tobacco Smoking
4.Association between smoking status and mortality risk among elderly people aged 60 and above in Beijing City.
Shi Min CHEN ; Sheng Shu WANG ; Shao Hua LIU ; Xue Hang LI ; Zhi Qiang LI ; Hao Wei LI ; Rong Rong LI ; Jian Hua WANG ; Shan Shan YANG ; Miao LIU ; Yao HE
Chinese Journal of Preventive Medicine 2023;57(9):1403-1411
Objective: To examine the association between smoking status and related mortality among elderly people aged 60 and above in urban and rural areas of Beijing City. Methods: Based on Beijing City Elderly Comprehensive Health Cohort Study from 2009 to 2014, a total of 4 499 eligible older adults included in the baseline survey were followed up and investigated to collect information on survival and death. The Cox proportional hazards regression model was used to estimate hazard ratios (HRs) and corresponding 95% confidence intervals (CIs), and the dose-response relationship was estimated between the smoking index, the years of quitting and mortality. Results: The median (IQR) age of 4 499 subjects was 70.00 (10.00) years old, including 1 814 (40.32%) males. The proportion of non-smokers, former smokers and current smokers was 69.50% (3 127/4 499), 13.20% (594/4 499) and 17.30% (778/4 499), respectively. After adjusting for confounding factors such as demographic and sociological characteristics, lifestyle, etc., the results of multivariate Cox regression analysis showed that, compared to non-smokers, former smokers had a 30.6% increased risk of all-cause mortality [HR (95%CI): 1.306 (1.043-1.636)] and the HR (95%CI) of all-cause, malignant tumor and lung cancer mortality among current smokers has increased by 50.0% [HR (95%CI): 1.500 (1.199-1.877)], 80.3% [HR (95%CI): 1.803 (1.226-2.652)] and 212.6% [HR (95%CI): 3.126 (1.626-6.012)], respectively. The smoking index was positively associated with the increased risk of all-cause, malignant tumor and lung cancer mortality, while the years of smoking cessation were negatively associated with that risk (P<0.05). Conclusion: Smoking is associated with tobacco-related mortality among elderly people in Beijing City.
Aged
;
Male
;
Humans
;
Child
;
Female
;
Beijing
;
Cohort Studies
;
Lung Neoplasms
;
Smoking
;
Tobacco Smoking
5.Proteomic Analysis Revealed the Involvement of Autophagy in Rat Acute Lung Injuries Caused by Gas Explosion Based on a Data-Independent Acquisition Strategy.
Shan HONG ; Chun Jie DING ; Qiang ZHOU ; Yun Zhe SUN ; Miao ZHANG ; Ning LI ; Xin Wen DONG ; Yi GUAN ; Lin ZHANG ; Lin Qiang TIAN ; Jia CAO ; Wu YAO ; Wen Jie REN ; San Qiao YAO
Biomedical and Environmental Sciences 2023;36(2):206-212
Animals
;
Rats
;
Explosions
;
Proteomics
;
Autophagy
6.Selective column arthrodesis based on three-column theory for malunion of Lisfranc injury
Le CAO ; Lufeng YAO ; Haiqing WANG ; Yongping WU ; Lu HUANG ; Qiang ZHANG ; Xudong MIAO
Chinese Journal of Orthopaedic Trauma 2022;24(1):25-32
Objective:To investigate the mid-term clinical outcomes of selective column arthrodesis based on the three-column theory in the treatment of malunion of Lisfranc injury.Methods:The 28 patients with malunion of Lisfranc injury were analyzed retrospectively who had been treated by selective column arthrodesis at Department of Orthopedic Surgery, The Second Affiliated Hospital, Zhejiang University School of Medicine from January 2011 to January 2020.They were 18 males and 10 females, with an average age of 37.2 years(from 18 to 65 years). Twelve left and 16 right sides were affected. According to Myerson's three-column classification, one case was medial column injury (type A), 4 ones middle column injury (type B), 7 ones medial plus middle columns injury and 16 ones three-column injury. Medial column arthrodesis was conducted in 7, middle column arthrodesis in 4 and medial plus middle columns arthrodesis in 17. The American Orthopaedic Foot and Ankle Society (AOFAS) midfoot score and visual analogue scale (VAS) were compared between preoperation and the last follow-up to evaluate the improvements in foot function and pain. The operation-related complications were recorded.Results:All patients were followed up for an average of 35.6 months (from 18 to 60 months). The AOFAS midfoot score increased from 43.1±4.1 at pre-operation to 84.1± 7.4 at the last follow-up and the VAS score decreased from 5.7±1.3 at pre-operation to 2.0±0.9 at the last follow-up (both P<0.001). The wounds healed in 28 patients, 3 of whom had postoperative wound exudation but responded to dressing change. There were no such complications as injury to the deep peroneal nerve or deep venous thrombosis. The internal fixation was removed in 5 patients at about one year after arthrodesis. Conclusion:Selective column arthrodesis based on the three-column theory can result in satisfactory med-term clinical outcomes in the treatment of malunion of Lisfranc injury.
7.Association between mild cognitive impairment and all-cause mortality in elderly population in China: a Meta analysis.
Zhi Qiang LI ; Sheng Shu WANG ; Xin Ran GONG ; Yan Ding WANG ; Di WU ; Mei Tao YANG ; Jin Peng GUO ; Rui Zhong JIA ; Miao LIU ; Yao HE ; Yong WANG
Chinese Journal of Epidemiology 2022;43(9):1479-1484
Objective: To quantitatively evaluate the association between mild cognitive impairment and all-cause mortality. Methods: The research papers of the association between cognitive impairment and all-cause mortality in the elderly in the databases of PubMed, EMBASE, Wang Fang data and CNKI published as of August 1, 2021 were comprehensively retrieved. Software R 4.02 was used for Meta-analysis. Results: A total of 9 research papers were included, involving 48 709 patients. The quality of included papers was high. The results of Meta-analysis showed that the association between mild cognitive impairment and the increased risk of all-cause mortality was statistically significant. Compared with the normal cognitive population, the risk of mortality in the elderly with mild cognitive impairment increased by 39% (HR=1.39, 95%CI: 1.18-1.63). Conclusions: The current research evidence showed that mild cognitive impairment assessed by MMSE screening scale can be used as an independent predictor of the increased risk of all-cause mortality in the elderly population in China. However, due to the limitation of the number of included studies and sample size, the conclusions need to be supported by more evidence studies.
Aged
;
China/epidemiology*
;
Cognition
;
Cognition Disorders
;
Cognitive Dysfunction/epidemiology*
;
Humans
;
Mass Screening
8.Clinical features and prognosis of infection related to allogeneic hematopoietic stem cell transplantation in patients with blood diseases.
Min GUO ; Tao WU ; Hai BAI ; Rui XI ; Cun Bang WANG ; Yao Zhu PAN ; Yong Gang CAI ; Qiang Sheng FENG ; Miao LEI
Chinese Journal of Hematology 2019;40(1):69-72
9.Risk factors and drug resistance in early-onset neonatal group B streptococcal disease.
Ying-Wei WANG ; Yao-Qiang DU ; Xiao-Lin MIAO ; Guang-Yong YE ; Yi-Yun WANG ; Ai-Bo XU ; Yun-Zhong JING ; Yu TONG ; Kai XU ; Mei-Qin ZHENG ; Dong CHEN ; Zhen WANG
Journal of Zhejiang University. Science. B 2018;19(12):973-978
In recent years, group B streptococcus (GBS) has become an important pathogen that causes infections in many neonatal organs, including the brain, lung, and eye (Ballard et al., 2016). A series of studies performed on GBS infections in western countries have revealed that GBS is one of the primary pathogens implicated in perinatal infection, and GBS infections are a major cause of neonatal morbidity and mortality in the United States (Decheva et al., 2013). In China, GBS is mainly found by screens for adult urogenital tract and perinatal infections, and neonatal GBS infections have been rarely reported. The incidence rate of early-onset neonatal GBS disease is thought to be lower in China than in western countries; however, this data is controversial since it also reflects the clinical interest in GBS (Dabrowska-Szponar and Galinski, 2001).
Adult
;
Anti-Bacterial Agents/therapeutic use*
;
China/epidemiology*
;
Drug Resistance
;
Drug Resistance, Bacterial
;
Female
;
Humans
;
Incidence
;
Mothers
;
Parity
;
Pregnancy
;
Pregnancy Complications, Infectious/diagnosis*
;
Risk Factors
;
Streptococcal Infections/drug therapy*
;
Streptococcus agalactiae
10.Analysis of causes and whole microbial structure in a case of rampant caries.
Xiao-Yu HU ; Yu-Fei YAO ; Bo-Miao CUI ; Jun LV ; Xin SHEN ; Biao REN ; Ming-Yun LI ; Qiang GUO ; Rui-Jie HUANG ; Yan LI
Journal of Southern Medical University 2016;36(10):1328-1333
OBJECTIVETo analyze the whole microbial structure in a case of rampant caries to provide evidence for its prevention and treatment.
METHODSClinical samples including blood, supragingival plaque, plaque in the caries cavity, saliva, and mucosal swabs were collected with the patient's consent. The blood sample was sent for routine immune test, and the others samples were stained using Gram method and cultured for identifying colonies and 16S rRNA sequencing. DNA was extracted from the samples and tested for the main cariogenic bacterium (Streptococcus mutans) with qPCR, and the whole microbial structure was analyzed using DGGE.
RESULTSThe patient had a high levels of IgE and segmented neutrophils in his blood. Streptococci with extremely long chains were found in the saliva samples under microscope. Culture of the samples revealed the highest bacterial concentration in the saliva. The relative content of hemolytic bacterium was detected in the samples, the highest in the caries cavity; C. albicans was the highest in the dental plaque. In addition, 33 bacterial colonies were identified by VITEK system and 16S rDNA sequence phylogenetic analysis, and among them streptococci and Leptotrichia wade were enriched in the dental plaque sample, Streptococcus mutans, Fusobacterium nucleatum, and Streptococcus tigurinus in the caries cavity, and Lactobacillus in the saliva. S. mutans was significantly abundant in the mucosal swabs, saliva and plaque samples of the caries cavity as shown by qPCR. Compared to samples collected from a healthy individual and another two patients with rampant caries, the samples from this case showed a decreased bacterial diversity and increased bacterial abundance shown by PCR-DGGE profiling, and multiple Leptotrichia sp. were detected by gel sequencing.
CONCLUSIONThe outgrowth of such pathogenic microorganisms as S. mutans and Leptotrichia sp., and dysbiosis of oral microbial community might contribute to the pathogenesis of rampant caries in this case.
Abnormalities, Multiple ; Dental Caries ; microbiology ; Dental Plaque ; microbiology ; Fusobacterium ; isolation & purification ; Humans ; Immunoglobulin E ; blood ; Lactobacillus ; isolation & purification ; Leptotrichia ; isolation & purification ; Limb Deformities, Congenital ; Microbiota ; Mouth Mucosa ; microbiology ; Neutrophils ; cytology ; Phylogeny ; Polymerase Chain Reaction ; RNA, Ribosomal, 16S ; genetics ; Saliva ; microbiology ; Streptococcus ; isolation & purification ; Tooth Abnormalities

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