1.Screening and bioinformatics analysis of hub genes of bronchial asthma based on GEO database chip
Weilai ZHOU ; Jun LI ; Taian ZHAO ; Ying LI ; Miao HE
Chinese Journal of Immunology 2025;41(2):287-294
Objective:Using bioinformatics methods to find key genes related to asthma and discussing their molecular mecha-nisms.Methods:Weighted gene co-expression network analysis(WGCNA)was performed on GSE143303 microarray dataset to screen out the modules significantly related to asthma.Module genes were subjected to protein-protein interaction(PPI)network analysis and function and pathway enrichment analysis.Key genes were obtained by intersecting WGCNA analysis results with differentially expressed genes.miRDB and miRwalk databases were used to predict upstream miRNAs of key genes,and Cytoscape was used to construct key mRNA-miRNA regulatory network.GSE147878 dataset was used to verify expressions of key genes,and evaluate diag-nostic value of key genes according to ROC curve.Results:Genes in magenta module and purple module were significantly related to asthma,mainly involved in Wnt signaling pathway,cell adhesion and so on.A total of 13 key genes were obtained,including ATP6V1G1,TXNDC17,NDUFA4,RHOA,SEC61B,RPS3A,PSMC5,GSPT1,MBP,SMARCC2,GNL3L,RPL7L1,RAD21 and their potential miRNA-mRNA regulatory networks.Conclusion:Key genes such as ATP6V1G1,GSPT1,SEC61B play an important role in bronchial asthma and have clinical diagnostic value.
2.Screening and bioinformatics analysis of hub genes of bronchial asthma based on GEO database chip
Weilai ZHOU ; Jun LI ; Taian ZHAO ; Ying LI ; Miao HE
Chinese Journal of Immunology 2025;41(2):287-294
Objective:Using bioinformatics methods to find key genes related to asthma and discussing their molecular mecha-nisms.Methods:Weighted gene co-expression network analysis(WGCNA)was performed on GSE143303 microarray dataset to screen out the modules significantly related to asthma.Module genes were subjected to protein-protein interaction(PPI)network analysis and function and pathway enrichment analysis.Key genes were obtained by intersecting WGCNA analysis results with differentially expressed genes.miRDB and miRwalk databases were used to predict upstream miRNAs of key genes,and Cytoscape was used to construct key mRNA-miRNA regulatory network.GSE147878 dataset was used to verify expressions of key genes,and evaluate diag-nostic value of key genes according to ROC curve.Results:Genes in magenta module and purple module were significantly related to asthma,mainly involved in Wnt signaling pathway,cell adhesion and so on.A total of 13 key genes were obtained,including ATP6V1G1,TXNDC17,NDUFA4,RHOA,SEC61B,RPS3A,PSMC5,GSPT1,MBP,SMARCC2,GNL3L,RPL7L1,RAD21 and their potential miRNA-mRNA regulatory networks.Conclusion:Key genes such as ATP6V1G1,GSPT1,SEC61B play an important role in bronchial asthma and have clinical diagnostic value.
3.Minimally invasive cardiac surgery for cardiac atrioventricular valve reoperation
Weilai HE ; Xin LI ; Hong CHE ; Chaolong JIN ; Wenpeng DONG ; Feng LI ; Yanli LI ; Min LIN ; Shenglin GE ; Ruyuan ZHOU
Chinese Journal of Clinical Thoracic and Cardiovascular Surgery 2022;29(06):755-760
Objective To summarize the clinical experiences of minimally invasive cardiac surgery (MICS) for cardiac atrioventricular valve reoperation. Methods Perioperative data of 32 patients who underwent MICS for cardiac atrioventricular valve reoperation from 2009 to 2019 in the First Affiliated Hospital of Anhui Medical University were retrospectively reviewed, including 13 males and 19 females with a mean age of 51.0±12.6 years. All patients were given combined intravenous and inhalation anesthesia, and a double-lumen tube for mechanical ventilation. Cardiopulmonary bypass was established in all patients by femoral artery and venous cannulation or combined with percutaneous superior vena cava cannulation, without aortic cross-clamping. The MICS approaches included right anterolateral small incision surgery, thoracoscopic assisted small incision surgery and total thoracoscopic surgery. The clinical data of the 32 patients were compared with the perioperative indicators of 24 patients undergoing reoperation with conventional median thoracotomy during the same period. Results Among them, 21 patients underwent isolated tricuspid valve replacement, 4 isolated tricuspid valvuloplasty, 1 combined tricuspid valve replacement and atrial septal defect repair and 6 combined mitral valve replacement and tricuspid valvuloplasty. Twenty-seven patients completed the operation in a beating heart, and 5 under the condition of ventricular fibrillation. Operation time (3.23±1.56 h vs. 5.46±2.13 h, P<0.001), postoperative mechanical ventilation time (9.19±5.40 h vs. 43.23±21.74 h, P<0.001), ICU stay (35.03±18.26 h vs. 79.15±22.43 h, P<0.001) and hospital stay of patients with minimally invasive surgery (9.35±6.43 d vs. 15.85±7.56 d, P=0.001) were shorter than those with median thoracotomy. And the extracorporeal circulation time was not significantly prolonged. There were 4 perioperative complications in patients with minimally invasive surgery, and 1 died in hospital after operation. Conclusion MICS for cardiac atrioventricular valve reoperation can avoid the risk of median sternotomy and separation of cardiac scar adhesion. Especially, total thoracoscopic surgery has more advantages when compared with other operations, including less trauma, less myocardial ischemia reperfusion injury, more rapid recovery and fewer postoperative complications. Total thoracoscopic surgery may be the development direction of MICS for cardiac atrioventricular valve reoperation. However we should take effective and feasible measures to solve the problems caused by cardiopulmonary bypass.
4.Risk factors and characteristics of prostate cancer bone metastases
Junming LIN ; Jiaming LIU ; Yang ZHOU ; Weilai TONG ; Xuanyin CHEN ; Zhili LIU
Medical Journal of Chinese People's Liberation Army 2017;42(8):707-711
Objective To analyze the risk factors and characteristics of bone metastases in patients with prostate cancer. Methods Patients who were diagnosed as prostate cancer by biopsy and histopathologic analysis between June 2006 and June 2016 were included in this study. The clinical data of the patients were reviewed, and the demographic data, laboratory examination results and Gleason score were recorded. The correlations between clinical factors and bone metastasis were analyzed, and the risk factors of bone metastasis were identified. Results A total of 585 patients were recruited in this study, including 228 with bone metastasis and 357 without bone metastasis. Of the patients with bone metastasis, the incidence of pelvic metastasis was the highest, accounting for 81.58%, followed by spin (63.16%) and rib (58.33%), and the incidence of clavicle metastasis was the lowest (14.47%). Logistic regression analysis showed that age <71.5 years, alkaline phosphotase >85.5U/L, prostate-specific antigen >79.88μg/L and Gleason score >7.5 were the risk factors of bone metastasis in prostate cancer. ROC curve analysis showed that the sensitivity of diagnosing bone metastasis was 56.1%, 66.7%, 68.4% and 56.1%, and the specificity was 56.6%, 81.8%, 70.0% and 65.3%, respectively for above 4 factors. Conclusions The most common site of bone metastasis in patients with prostate cancer is pelvis. Patients' age, concentrations of plasma ALP and PSA, and Gleason score are the risk factors for bone metastasis in patients with prostate cancer.
5. A preliminary study on the outcome of lower-risk myelodysplastic syndrome by low-dose decitabine
Li YE ; Yanling REN ; Lili XIE ; Yingwan LUO ; Peipei LIN ; Xinping ZHOU ; Liya MA ; Chen MEI ; Weilai XU ; Juying WEI ; Huifang JIANG ; Liming ZHANG ; Hui ZENG ; Hongyan TONG
Chinese Journal of Hematology 2017;38(4):307-312
Objective:
To assess the efficiency and safety of low-dose decitabine in patients with lower-risk myelodysplastic syndrome (MDS) to couple with the clinical significance of MDS-related gene mutations.
Methods:
This study was done in 4 institutions in Zhejiang Province. A total of 62 newly diagnosed patients with lower-risk MDS were assigned to two groups of decitabine (12 mg·m-2·d-1 for 5 consecutive days) and best supportive care (BSC) . Their bone marrow samples were subject to examinations of MDS-related 15 gene mutations. The primary endpoints were the proportion of patients who achieved overall response (ORR) after at least two cycles and progression-free survival (PFS) , and their relevances to the gene mutations.
Results:
Of 62 enrolled patients, and 51 cases were included in the final analysis. 16 of 24 patients (66.7%) in decitabine group achieved ORR versus 8 of 27 (29.6%) in BSC group (
6.Expression of a novel adjuvant TFPR1 in Pichia pastoris and its identification
Xiuzhe NING ; Zhihua KOU ; Weilai SUN ; Qing ZHU ; Yi YANG ; Hongjie QIU ; Jingjing GUO ; Yan GUO ; Hong YU ; Yusen ZHOU
Chinese Journal of Microbiology and Immunology 2016;36(4):294-299
Objective To express a recombinant protein TFPR1 ( the functional region of the snake venom proteins from Trimeresurus flavoviridis) in Pichia pastoris expression system. Methods The target gene was codon-optimized and synthesized according to the sequence of the conserved structural do-main of triflin and then cloned into the Pichia pastoris expression vector pPICZαA to construct the recombi-nant expression plasmid pPICZαA-TFPR1. The recombinant plasmid pPICZαA-TFPR1 was electroporated into the yeast strain X33. The transformed strains carrying expression plasmid were screened out with Zeocin and then induced by methanol to express the recombinant protein TFPR1. ELISA was performed for the screening of positive clones. SDS-PAGE and Western blot were used for further identification of the ex-pressed products. Results The recombinant plasmid pPICZαA-TFPR1 was successfully constructed. The recombinant protein TFPR1 was expressed in a secreted form at a molecular weight of 16×103. Conclusion The recombinant protein TFPR1 was successfully expressed in Pichia pastoris expression system, which laid a foundation for further researches on its biological function and application as an adjuvant.
7.Pathophysiologic changes of local ischemic coronary artery and cardiac muscle after ligating canine LAD
Weilai HE ; Rukun CHEN ; Ruyuan ZHOU ; Shenglin GE ; Xiaoyin CHEN
Chinese Journal of Pathophysiology 2000;0(11):-
AIM: To evaluate the reliability of making a research model of coronary artery stenosis and local myocardial infarction reproduced in dog by ligating canine LAD. METHODS: We disparted 30 aged healthy cross-breed dogs [(18.5?6.7) kg] into three groups. The near part of the LAD through left minimal thoracic incision was ligated to interdict 25% (group A), 50% (group B), 75% (group C) of the flux, respectively. The changes of plasma endothelium-derived factors NO, ET-1, sP-selectin and CTnT were measured before ligation and at different time points after ligation. The expression of P-selectin gene in cardiac muscle was detected by Western blotting. The segments of distal parts of the ligated LAD were cut and pathological changes of the patches of topical cardiac muscle were observed by electronic microscope. RESULTS: After ligation, NO/ET-1, P-selectin and CTnT had significant changes in group B (P

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