1.Single-cell and spatial transcriptomic analysis reveals that an immune cell-related signature could predict clinical outcomes for microsatellite-stable colorectal cancer patients receiving immunotherapy.
Shijin YUAN ; Yan XIA ; Guangwei DAI ; Shun RAO ; Rongrong HU ; Yuzhen GAO ; Qing QIU ; Chenghao WU ; Sai QIAO ; Yinghua XU ; Xinyou XIE ; Haizhou LOU ; Xian WANG ; Jun ZHANG
Journal of Zhejiang University. Science. B 2025;26(4):371-392
Recent data suggest that vascular endothelial growth factor receptor inhibitor (VEGFRi) can enhance the anti-tumor activity of the anti-programmed cell death-1 (anti-PD-1) antibody in colorectal cancer (CRC) with microsatellite stability (MSS). However, the comparison between this combination and standard third-line VEGFRi treatment is not performed, and reliable biomarkers are still lacking. We retrospectively enrolled MSS CRC patients receiving anti-PD-1 antibody plus VEGFRi (combination group, n=54) or VEGFRi alone (VEGFRi group, n=32), and their efficacy and safety were evaluated. We additionally examined the immune characteristics of the MSS CRC tumor microenvironment (TME) through single-cell and spatial transcriptomic data, and an MSS CRC immune cell-related signature (MCICRS) that can be used to predict the clinical outcomes of MSS CRC patients receiving immunotherapy was developed and validated in our in-house cohort. Compared with VEGFRi alone, the combination of anti-PD-1 antibody and VEGFRi exhibited a prolonged survival benefit (median progression-free survival: 4.4 vs. 2.0 months, P=0.0024; median overall survival: 10.2 vs. 5.2 months, P=0.0038) and a similar adverse event incidence. Through single-cell and spatial transcriptomic analysis, we determined ten MSS CRC-enriched immune cell types and their spatial distribution, including naive CD4+ T, regulatory CD4+ T, CD4+ Th17, exhausted CD8+ T, cytotoxic CD8+ T, proliferated CD8+ T, natural killer (NK) cells, plasma, and classical and intermediate monocytes. Based on a systemic meta-analysis and ten machine learning algorithms, we obtained MCICRS, an independent risk factor for the prognosis of MSS CRC patients. Further analyses demonstrated that the low-MCICRS group presented a higher immune cell infiltration and immune-related pathway activation, and hence a significant relation with the superior efficacy of pan-cancer immunotherapy. More importantly, the predictive value of MCICRS in MSS CRC patients receiving immunotherapy was also validated with an in-house cohort. Anti-PD-1 antibody combined with VEGFRi presented an improved clinical benefit in MSS CRC with manageable toxicity. MCICRS could serve as a robust and promising tool to predict clinical outcomes for individual MSS CRC patients receiving immunotherapy.
Humans
;
Colorectal Neoplasms/drug therapy*
;
Male
;
Female
;
Immunotherapy
;
Middle Aged
;
Aged
;
Tumor Microenvironment/immunology*
;
Retrospective Studies
;
Microsatellite Instability
;
Transcriptome
;
Single-Cell Analysis
;
Programmed Cell Death 1 Receptor/immunology*
;
Gene Expression Profiling
;
Immune Checkpoint Inhibitors/therapeutic use*
;
Adult
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Receptors, Vascular Endothelial Growth Factor/antagonists & inhibitors*
2.Identification of high-affinity VEGFR3-binding peptides through a phage-displayed random peptide library.
Li Feng SHI ; Yan WU ; Cai Yun LI
Journal of Gynecologic Oncology 2015;26(4):327-335
OBJECTIVE: Vascular endothelial growth factor (VEGF) interaction with its receptor, VEGFR-3/Flt-4, regulates lymphangiogenesis. VEGFR-3/Flt-4 expression in cancer cells has been correlated with clinical stage, lymph node metastasis, and lymphatic invasion. The objective of this study is to identify a VEGFR-3/Flt-4-interacting peptide that could be used to inhibit VEGFR-3 for ovarian cancer therapy. METHODS: The extracellular fragment of recombinant human VEGFR-3/Flt-4 (rhVEGFR-3/Flt-4) fused with coat protein pIII was screened against a phage-displayed random peptide library. Using affinity enrichment and enzyme-linked immunosorbent assay (ELISA) screening, positive clones of phages were amplified. Three phage clones were selected after four rounds of biopanning, and the specific binding of the peptides to rhVEGFR-3 was detected by ELISA and compared with that of VEGF-D. Immunohistochemistry and immunofluorescence analyses of ovarian cancer tissue sections was undertaken to demonstrate the specificity of the peptides. RESULTS: After four rounds of biopanning, ELISA confirmed the specificity of the enriched bound phage clones for rhVEGFR-3. Sequencing and translation identified three different peptides. Non-competitive ELISA revealed that peptides I, II, and III had binding affinities for VEGFR-3 with Kaff (affinity constant) of 16.4+/-8.6 microg/mL (n=3), 9.2+/-2.1 microg/mL (n=3), and 174.8+/-31.1 microg/mL (n=3), respectively. In ovarian carcinoma tissue sections, peptide III (WHWLPNLRHYAS), which had the greatest binding affinity, also co-localized with VEGFR-3 in endothelial cells lining lymphatic vessels; its labeling of ovarian tumors in vivo was also confirmed. CONCLUSION: These finding showed that peptide III has high specificity and activity and, therefore, may represent a potential therapeutic approach to target VEGF-VEGFR-3 signaling for the treatment or diagnosis of ovarian cancer.
Enzyme-Linked Immunosorbent Assay
;
Female
;
Humans
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Ovarian Neoplasms/*therapy
;
*Peptide Library
;
Sequence Analysis, DNA
;
Signal Transduction/physiology
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Vascular Endothelial Growth Factor A/metabolism
;
Vascular Endothelial Growth Factor Receptor-3/antagonists & inhibitors/*metabolism
3.Cytomegalovirus Retinitis after Intravitreal Bevacizumab Injection in an Immunocompetent Patient.
So Hyun BAE ; Tae Wan KIM ; Hum CHUNG ; Jang Won HEO
Korean Journal of Ophthalmology 2013;27(1):61-63
We report a case of cytomegalovirus (CMV) retinitis after intravitreal bevacizumab injection. A 61-year-old woman with diabetic macular edema developed dense vitritis and necrotizing retinitis 3 weeks after intravitreal bevacizumab injection. A diagnostic vitrectomy was performed. The undiluted vitreous sample acquired by vitrectomy was analyzed by polymerase chain reaction and culture. Polymerase chain reaction of the vitreous was positive for CMV DNA. Other laboratory results did not show evidence of other infectious retinitis and systemic immune dysfunction. Human immunodeficiency virus antibodies were also negative. After systemic administration of ganciclovir, retinitis has resolved and there has been no recurrence of retinitis during the follow-up period of 12 months. Ophthalmologists should be aware of potential risk for CMV retinitis after intravitreal bevacizumab injection.
Angiogenesis Inhibitors/administration & dosage/adverse effects
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Antibodies, Monoclonal, Humanized/administration & dosage/*adverse effects
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Cytomegalovirus/genetics
;
Cytomegalovirus Retinitis/diagnosis/*etiology/immunology
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DNA, Viral/analysis
;
Diagnosis, Differential
;
Female
;
Humans
;
Immunocompetence/*drug effects
;
Intravitreal Injections
;
Macular Edema/diagnosis/*drug therapy
;
Middle Aged
;
Polymerase Chain Reaction
;
Vascular Endothelial Growth Factor A/antagonists & inhibitors
4.HIF-1α siRNA reduces retinal neovascularization in a mouse model of retinopathy of prematurity.
Hui-Zhuo XU ; Shuang-Zhen LIU ; Si-Qi XIONG ; Xiao-Bo XIA
Chinese Journal of Contemporary Pediatrics 2011;13(8):680-683
OBJECTIVETo study the inhibition effect of HIF-1α specific siRNA expression vector pSUPERH1-siHIF-1α on retinal neovascularization in a mouse model of retinopathy of prematurity (ROP).
METHODSThe mouse model of ROP was prepared by the method Smith described. Forty-eight ROP mice were randomly divided into two groups: an experimental group that was intravitreously injected with pSUPERH1-siHIF-1α and a control group that was injected with pSUPER retro vector. The levels of HIF-1α and vascular endothelia growth factor (VEGF) in the retina were examined by Western blot. The retinal neovascularization was evaluated by angiography using FITC Dextran and quantitated histologically.
RESULTSThe levels of HIF-1α and VEGF in the retina in the experimental group were reduced 90% and 65% respectively compared with those in the control group. Meanwhile, the number of retinal neovascular endothelial nucleus outbreaking the inner limit membrane in the experimental group was significantly reduced compared with that in the control group.
CONCLUSIONSThe development of retinal neovascularization of ROP can be markedly inhibited by RNA interference targeting HIF-1α.
Animals ; Disease Models, Animal ; Humans ; Hypoxia-Inducible Factor 1, alpha Subunit ; analysis ; antagonists & inhibitors ; genetics ; Infant, Newborn ; Mice ; Mice, Inbred C57BL ; RNA, Small Interfering ; genetics ; Retinal Neovascularization ; prevention & control ; Retinopathy of Prematurity ; therapy ; Vascular Endothelial Growth Factor A ; analysis
5.Expression of Stat3, HIF-1alpha and VEGF in Wilms' tumor.
Zhi-Bin NIU ; Chang-Lin WANG ; Ying HOU ; Yi YANG ; Hong GAO
Chinese Journal of Contemporary Pediatrics 2007;9(5):461-464
OBJECTIVETo study the expression of signal transducer and activator of transcription 3 (Stat3), hypoxia-inducible factor-1alpha (HIF-1alpha) and vascular endothelial growth factor (VEGF) in Wilms' tumor and their roles in the development of Wilms' tumor.
METHODSThe expression of Stat3, HIF-1alpha and VEGF were detected by the immunohistochemical staining in 52 specimens from Wilms' tumor tissues, 47 from adjacent kidney tissues and 8 from normal kidney tissues. The expression intensity was analyzed by computer image processing.
RESULTSThe expression of Stat3, HIF-1 and VEGF were significantly up-regulated in Wilms' tumor tissues compared to those in adjacent tissues and normal kidney tissues (P < 0.05). Stat3 and VEGF proteins in Wilms' tumor tissues of stage III-IV and high risk histopathology were significantly higher than those of stage I-II and low risk histopathology. The higher expression of HIF-1 in Wilms' tumor tissues was shown in tumors with high risk histopathology and tumor size > or = 6 cm.
CONCLUSIONSIncreased expression of Stat3, HIF-1 and VEGF were found in Wilms' tumor tissues, and may be related to the development and angiogenesis of Wilms' tumor. Stat3 may regulate the expression of HIF-1 and VEGF, so it could be an effective target for inhibiting VEGF expression and angiogenesis of Wilms' tumor.
Child ; Child, Preschool ; Female ; Humans ; Hypoxia-Inducible Factor 1, alpha Subunit ; analysis ; Immunohistochemistry ; Infant ; Kidney Neoplasms ; blood supply ; chemistry ; pathology ; Male ; Neoplasm Staging ; Neovascularization, Pathologic ; etiology ; STAT3 Transcription Factor ; analysis ; Vascular Endothelial Growth Factor A ; analysis ; antagonists & inhibitors ; Wilms Tumor ; blood supply ; chemistry ; pathology
6.Inhibition effect of small interfering RNA of connective tissue growth factor on the expression of vascular endothelial growth factor and connective tissue growth factor in cultured human peritoneal mesothelial cells.
Fu-you LIU ; Li XIAO ; You-ming PENG ; Shao-bin DUAN ; Hong LIU ; Ying-hong LIU ; Gui-hui LING ; Fang YUAN ; Jun-xiang CHEN ; Xiao FU ; Jian-lian ZHU
Chinese Medical Journal 2007;120(3):231-236
BACKGROUNDThe peritoneum response to peritoneal dialysis can lead to fibrosis. The transforming growth factor beta1 (TGF-beta1) plays a key role in regulating tissue repair and remodelling after injury. Connective tissue growth factor (CTGF), a downstream mediator of TGF-beta1 inducing fibrosis, has been implicated in peritoneal fibrosis. Vascular endothelial growth factor (VEGF) plays a key role in angiogenesis that can hasten peritoneal fibrosis. In this study, we investigated the effect of small interfering RNA (siRNA) of CTGF by pRETRO-SUPER (PRS) retrovirus vector on the expression of CTGF and VEGF in human peritoneal mesothelial cells.
METHODSRetrovirus producing CTGF siRNA were constructed from the inverted oligonucleotides and transferred into packaging cell line PT67 with lipofectamine, and the virus supernatant was used to infect human peritoneal mesothelial cell (HPMC). The cells were divided into seven groups: low glucose DMEM, low glucose DMEM + TGF-beta1 5 ng/ml, low glucose DMEM + TGF-beta1 5 ng/ml + PRS-CTGF-siRNA(1-4) and low glucose DMEM + TGF-beta1 5 ng/ml + PRS. The expression of CTGF and VEGF were measured by semiquantitative RT-PCR and Western blot.
RESULTSLow levels of CTGF and VEGF were detected in confluent HPMCs. Following stimulation with TGF-beta1, the levels of CTGF and VEGF were significantly upregulated (P < 0.01). Introduction of PRS-CTGF-siRNA(1-4) resulted in the significant reduction of CTGF mRNA and protein, and VEGF mRNA (P < 0.01), especially in groups PRS-CTGF-siRNA1 and PRS-CTGF-siRNA4. The introduction of PRS void vector did not have these effects (P > 0.05).
CONCLUSIONSThe expression of CTGF siRNA mediated by PRS retrovirus vector can effectively reduce the level of CTGF and VEGF induced by TGF-beta1 in cultured HPMCs. This study may provide potential therapeutic strategies to prevent the peritoneal fibrosis.
Animals ; Base Sequence ; Cells, Cultured ; Connective Tissue Growth Factor ; Epithelial Cells ; metabolism ; Humans ; Immediate-Early Proteins ; analysis ; antagonists & inhibitors ; genetics ; Intercellular Signaling Peptides and Proteins ; analysis ; genetics ; Mice ; Molecular Sequence Data ; NIH 3T3 Cells ; Peritoneum ; cytology ; metabolism ; RNA, Messenger ; analysis ; RNA, Small Interfering ; pharmacology ; Retroviridae ; genetics ; Reverse Transcriptase Polymerase Chain Reaction ; Transforming Growth Factor beta1 ; pharmacology ; Vascular Endothelial Growth Factor A ; analysis ; genetics
7.An antioxidant modulates expression of receptor activator of NF-kappaB in asthma.
Kyung Sun LEE ; Hee Sun PARK ; Seoung Ju PARK ; So Ri KIM ; Kyung Hoon MIN ; Sun Mi JIN ; Liangchang LI ; Yong Chul LEE
Experimental & Molecular Medicine 2006;38(3):217-229
Oxidative stress plays critical roles in airway inflammation that is usually accompanied by increased vascular permeability and plasma exudation. VEGF increases vascular permeability and leads to airway inflammation. In addition, VEGF has been shown to enhance receptor activator of NF-kappaB (RANK) expression in endothelial cells. An aim of the study was to determine the potential role of antioxidant in the regulation of RANK expression in murine model of asthma. We have used a C57BL/6 mouse model of allergic asthma to evaluate the effect of L-2-oxothiazolidine-4-carboxylic acid (OTC), a prodrug of cysteine, which acts as an antioxidant, and VEGF receptor inhibitor on RANK mRNA expression. The mice develop the following pathophysiological features of asthma in the lungs: increased expression of RANK mRNA, increased number of inflammatory cells of the airways, increased vascular permeability, and increased levels of VEGF. Administration of OTC and VEGF receptor inhibitor markedly reduced plasma extravasation and VEGF levels in allergen-induced asthmatic lungs. We also showed that the increased RANK mRNA expression at 72 h after ovalbumin inhalation were reduced by the administration of OTC or VEGF receptor inhibitor. The results indicate that OTC and VEGF receptor inhibitor which inhibit up-regulation of VEGF expression modulate RANK expression that may be in association with the regulation of vascular permeability, and suggest that VEGF may regulate the RANK expression. These findings provide a crucial molecular mechanism for the potential use of antioxidants to prevent and/or treat asthma and other airway inflammatory disorders.
Vascular Endothelial Growth Factor A/analysis/antagonists & inhibitors/metabolism
;
Thiazolidines
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Thiazoles/*pharmacology
;
Reverse Transcriptase Polymerase Chain Reaction
;
Receptors, Vascular Endothelial Growth Factor/antagonists & inhibitors
;
Receptors, Tumor Necrosis Factor/genetics/*metabolism
;
Receptors, Cytoplasmic and Nuclear/genetics/*metabolism
;
Reactive Oxygen Species/metabolism
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RNA, Messenger/genetics/metabolism
;
Pyrrolidonecarboxylic Acid
;
Proto-Oncogene Proteins c-akt/metabolism
;
Protein Kinase Inhibitors/pharmacology
;
Prodrugs/pharmacology
;
Phosphorylation/drug effects
;
Ovalbumin/immunology
;
Osteoprotegerin
;
Mice, Inbred C57BL
;
Mice
;
Immunohistochemistry
;
Glycoproteins/genetics/*metabolism
;
Gene Expression/drug effects
;
Female
;
Capillary Permeability/drug effects
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Bronchoalveolar Lavage Fluid/chemistry/cytology
;
Blotting, Western
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Asthma/*drug therapy/immunology/metabolism
;
Antioxidants/*pharmacology
;
Animals
8.A preliminary study on mechanisms for resistance of CML patient BM-derived bcr/abl+ and Flk1+CD31-CD34- stem cells to STI571 in vitro.
Yong-Ping SONG ; Bai-Jun FANG ; Xu-Dong WEI ; Shu ZHENG
Journal of Experimental Hematology 2005;13(6):1004-1009
To evaluate the effect of imatinib mesylate (STI571) on primitive/committed malignant progenitor cells in chronic myelogenous leukemia (CML) and to further elucidate the mechanisms involved in CML relapse and in some CML cells resistant to STI571, bone marrow-derived malignant bcr/abl-positive, Flk1(+)CD31CD34(-) cells with hemangioblastic characteristics from CML patients were grown in Methocult GF+ media with or without STI571, and inhibitory effect of STI571 on proliferation of differentiated and differentiating, bcr/abl(+), Flk1(+)CD31CD34(-) cells with hemangioblastic characteristics was investigated in vitro. The results showed that in vitro exposure to 5 micromol/L STI571 (the concentration of STI571 usually achieved in patients is 1-2 micromol/L) for 96 hours inhibited bcr/abl(+) committed progenitors (colony-forming cells, CFCs). No evident suppression of normal primitive, bcr/abl(+), and Flk1(+)CD31(-)CD34(-) cells were observed. It is concluded that CML primitive stem cells remain viable in the presence of STI571 and that inhibition of bcr/abl tyrosine kinase by STI571 restores normal hematopoiesis by removing the proliferative advantage of CML committed progenitors but that elimination of all CML progenitors may not occur. So despite dramatic short-term responses in vivo, such in vitro resistance to STI571, may translate into disease relapse after prolonged therapy.
Antigens, CD34
;
analysis
;
genetics
;
Benzamides
;
Bone Marrow Cells
;
drug effects
;
metabolism
;
pathology
;
Cell Differentiation
;
drug effects
;
Cell Proliferation
;
drug effects
;
Drug Resistance, Neoplasm
;
Fluorescent Antibody Technique
;
Fusion Proteins, bcr-abl
;
genetics
;
metabolism
;
Hematopoietic Stem Cells
;
drug effects
;
metabolism
;
pathology
;
Humans
;
Imatinib Mesylate
;
In Situ Hybridization, Fluorescence
;
Leukemia, Myelogenous, Chronic, BCR-ABL Positive
;
blood
;
genetics
;
metabolism
;
Piperazines
;
pharmacology
;
Platelet Endothelial Cell Adhesion Molecule-1
;
analysis
;
genetics
;
Protein Kinase Inhibitors
;
pharmacology
;
Protein-Tyrosine Kinases
;
antagonists & inhibitors
;
Pyrimidines
;
pharmacology
;
Reverse Transcriptase Polymerase Chain Reaction
;
Vascular Endothelial Growth Factor Receptor-2
;
analysis
;
genetics
9.VEGF antisense oligonucleotide inhibits the expression of vascular endothelial growth factor in human leukemic cell lines.
Ling ZHANG ; Zhi-guang TU ; Wen-li FENG ; Zong-gan HUANG
Chinese Journal of Hematology 2004;25(1):22-25
OBJECTIVETo explore the effects of vascular endothelial growth factor (VEGF) antisense phosphorothioated oligodeoxynucleotide (AS-ODN) on the expression of VEGF in human leukemic cell lines (HL-60 and K562 cells).
METHODSThe levels of VEGF mRNA and protein in leukemic cells incubated with VEGF AS-ODN were measured by RT-PCR, immunohistochemistry assay and ELISA. MTT test was used to examine the influence of the culture supernatant (CS) of VEGF AS-ODN treated leukemic cells on the proliferation of human umbilical vein endothelial cells (ECV304).
RESULTSAfter leukemic cells were treated with different concentrations (2.5 approximately 15.0 micro mol/L) of VEGF AS-ODN for 24 h, VEGF mRNA level in the cells decreased remarkably in a concentration dependent manner, no change was found in the VEGF missense ODN treated cells (MS-ODN). When the leukemic cells were treated with 5 micro mol/L VEGF AS-ODN for 24 h, VEGF protein level decreased greatly both in the cells and in the CS; and the proliferation stimulating effect of the treated CS on the ECV304 cells reduced. Meanwhile, there was no obvious change in VEGF protein and its effect in the VEGF MS-ODN treated group.
CONCLUSIONVEGF AS-ODN could inhibit VEGF expression in human leukemic cell lines in vitro.
Enzyme-Linked Immunosorbent Assay ; HL-60 Cells ; Humans ; Immunohistochemistry ; K562 Cells ; Oligonucleotides, Antisense ; pharmacology ; RNA, Messenger ; analysis ; Vascular Endothelial Growth Factor A ; antagonists & inhibitors ; genetics
10.Inhibiting effect of vascular endothelial growth factor (VEGF) antisense oligodeoxynucleotides on VEGF expression in U937 cell.
Yun-Jie TONG ; Min ZHANG ; Ping ZOU ; Rong GUO
Journal of Experimental Hematology 2004;12(2):151-153
To study the effect of VEGF fully phosporothioated antisense oligodeoxynucleotide (VEGF-ASODN) on VEGF expression in acute monocyte leukemic cell line U937 in vitro, U937 cells were incubated with VEGF-ASODN at concentrations of 10, 20 and 30 micro mol/L or scrambled sequence as compared with negative control. The expression of VEGF mRNA was measured by semi-quantitative RT-PCR. The expression of VEGF protein was measured by Western blot. The result showed that VEGF-ASODN had obviously inhibitive effect on expression of VEGF in U937 cell, as compared with scrambled sequence and negative control (P < 0.05). Scrambled sequence group had no significant difference compared with negative control group (P > 0.05). It is concluded that the expressions of VEGF mRNA and protein in leukemic cell line U937 are down-regulated by VEGF-ASODN.
Humans
;
Oligodeoxyribonucleotides, Antisense
;
pharmacology
;
RNA, Messenger
;
analysis
;
U937 Cells
;
Vascular Endothelial Growth Factor A
;
analysis
;
antagonists & inhibitors
;
genetics

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