1.Single chain antibody fragment display systems: a review.
Yao CHEN ; Xingfu SHU ; Yu ZHAO ; Bowen ZHANG ; Zhongren MA ; Haixia ZHANG
Chinese Journal of Biotechnology 2023;39(9):3681-3694
Single chain antibody fragment (scFv) is a small molecule composed of a variable region of heavy chain (VH) and a variable region of light chain (VL) of an antibody, and these two chains are connected by a flexible short peptide. scFv is the smallest functional fragment with complete antigen-binding activity, which contains both the antibody-recognizing site and the antigen-binding site. Compared with other antibodies, scFv has the advantages of small molecular weight, strong penetration, low immunogenicity, and easy expression. Currently, the most commonly used display systems for scFv mainly include the phage display system, ribosome display system, mRNA display system, yeast cell surface display system and mammalian cell display system. In recent years, with the development of scFv in the field of medicine, biology, and food safety, they have also attracted much attention in the sectors of biosynthesis and applied research. This review summarizes the advances of scFv display systems in recent years in order to facilitate scFv screening and application.
Animals
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Immunoglobulin Variable Region/genetics*
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Immunoglobulin Fragments/metabolism*
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Single-Chain Antibodies/metabolism*
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Peptide Library
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Mammals/genetics*
2.Increasing the safety and efficacy of chimeric antigen receptor T cell therapy.
Protein & Cell 2017;8(8):573-589
Chimeric antigen receptor (CAR) T cell therapy is a promising cancer treatment that has recently been undergoing rapid development. However, there are still some major challenges, including precise tumor targeting to avoid off-target or "on-target/off-tumor" toxicity, adequate T cell infiltration and migration to solid tumors and T cell proliferation and persistence across the physical and biochemical barriers of solid tumors. In this review, we focus on the primary challenges and strategies to design safe and effective CAR T cells, including using novel cutting-edge technologies for CAR and vector designs to increase both the safety and efficacy, further T cell modification to overcome the tumor-associated immune suppression, and using gene editing technologies to generate universal CAR T cells. All these efforts promote the development and evolution of CAR T cell therapy and move toward our ultimate goal-curing cancer with high safety, high efficacy, and low cost.
Cell Movement
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immunology
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Cell Proliferation
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Gene Expression
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Genetic Vectors
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chemistry
;
metabolism
;
Humans
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Immunotherapy, Adoptive
;
methods
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Lymphocyte Activation
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Lymphocytes, Tumor-Infiltrating
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cytology
;
immunology
;
transplantation
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Neoplasms
;
genetics
;
immunology
;
pathology
;
therapy
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Patient Safety
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Receptors, Antigen, T-Cell
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chemistry
;
genetics
;
immunology
;
Recombinant Fusion Proteins
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chemistry
;
genetics
;
immunology
;
Signal Transduction
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Single-Chain Antibodies
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chemistry
;
genetics
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T-Lymphocytes
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cytology
;
immunology
;
transplantation
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Treatment Outcome
3.Expression of anti-gp96 scFv fragment in Pichia pastoris and identification of its biological activity.
Mingming GUI ; Huiying WU ; Lu SUN ; Yaxing XU ; Bao ZHAO ; Xin LI ; Changfei LI ; Xidong WANG ; Songdong MENG
Chinese Journal of Biotechnology 2014;30(4):595-604
Secretory anti-gp96 scFv fragment was expressed in Pichia pastoris to obtain a small molecule antibody that specifically recognizes heat shock protein gp96. The gp96-scFv fragment gene was synthesized and cloned to Pichia pastoris expression plasmid pPICZa-A. Pichia pastoris X33 was electroporated with the linearized recombinant expression vector, and expression of gp96-scFv fragment was induced by methanol. The His-tagged recombinant protein was then purified by affinity chromatography and analyzed with SDS-PAGE and Western blotting assays. The biological activities of recombinant gp96-scFv fragment were determined by Western blotting, Immunofluorescence, ELISA and FACS assays. The gp96-scFv fragment was expressed successfully in Pichia pastoris. About 50 mg of recombinant protein could be purified from 1 liter of the Pichia pastoris culture supernatant. Its molecular weight was about 15 kDa. The gp96-scFv fragment could specifically bind to gp96 protein by Western blotting, immunofluorescence, ELISA and FACS analyses. Pichia pastoris-expressed gp96-scFv fragment specifically recognizes gp96 protein, which could be used for Western blotting, Immunofluorescence, ELISA and FACS analyses.
Blotting, Western
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Chromatography, Affinity
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Electrophoresis, Polyacrylamide Gel
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Enzyme-Linked Immunosorbent Assay
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Membrane Glycoproteins
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immunology
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Pichia
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metabolism
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Plasmids
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Recombinant Proteins
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biosynthesis
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Single-Chain Antibodies
;
biosynthesis
4.Single-chain human anti-EGFR antibody/truncated protamine fusion protein carrying Hsp47 siRNA can induce apoptosis of human hepatic stellate cells.
Yan-Li ZENG ; Xiao-Ju ZHANG ; Jia SHANG ; Gang-Qiang DING ; Yi KANG
Chinese Journal of Hepatology 2014;22(11):843-848
OBJECTIVETo construct a single-chain human anti-EGFR antibody (scFv) and truncated protamine (tP) fusion protein, ScFv/tP, carrying small interfering (si)RNA directed against the heat shock protein Hsp47, a collagen-binding glycoprotein, in order to evaluate the role Hsp47 in apoptosis of hepatic stellate cells.
METHODSA single chain of the human variable fragment was obtained by phage display and fused with the tP gene and with or without (negative control) the Hsp47 siRNA sequences. Following expression and purification of the scFv/tP fusion protein and the scFv/tPHsp47 siRNA fusion protein, internalization capabilities were tested in isolated human hepatic stellate cells and the QSG-7701 human hepatocyte cells with visualization by immunofluorescent staining. The DNA binding ability of the fusion proteins were verified by gel shift assay.Following ScFv/tP-Hsp47 siRNA fusion protein transfection into the human hepatic stellate cells, the levels of Hsp47 mRNA and protein expression were tested by RT-PCR and Western blotting; in addition, effects of siRNA-mediated silencing of Hsp47 on cell proliferation and apoptosis were analyzed by the cell counting kit (CCK)-8, flow cytometry and Western blot detection of the apoptosis marker poly (ADP-ribose) polymerase (PARP).
RESULTSIndirect immunofluorescence revealed that the ScFv/tP fusion proteins were internalized into human hepatic stellate cells but not into the QSG-7701 cells.The ScFv/tP-Hsp47 siRNA fusion protein caused reduced expression of Hsp47 mRNA and protein expression in the human hepatic stellate cells, as well as increased the cells' apoptosis remarkably.
CONCLUSIONThe ScFv/tP fusion protein can be used as a transfection reagent to deliver Hsp47 siRNA into hepatic stellate cells and to mediate apoptosis via blockade of Hsp47 expression.
Apoptosis ; Cell Proliferation ; HSP47 Heat-Shock Proteins ; genetics ; Hepatic Stellate Cells ; cytology ; Humans ; Protamines ; metabolism ; RNA, Messenger ; RNA, Small Interfering ; Receptor, Epidermal Growth Factor ; immunology ; Single-Chain Antibodies ; Transfection
5.Optimizing the host bacteria to make a large naive phage antibody library in the recombination system.
Wei SUN ; Heng LIN ; Fang HUA ; Zhuo-Wei HU
Acta Pharmaceutica Sinica 2013;48(1):66-70
To prepare large naive phage antibody library, the host bacteria with high transformation efficiency is used in the Cre-LoxP recombination system. The variable regions of immunoglobulin light and heavy genes were amplified from lymphocytes collected from adult peripheral blood and newborn cord blood. The genes were spliced to form the single-chain variable fragments (scFv) by overlap PCR, cloned into pDAN5a vector and then transformed into XL2-blue MRF' with the Hte gene. Compared with XL1-blue strain, the size of the primary library was increased by 3.9 times. The primary library infected Cre recombinase-expressing bacteria, and the genes between phagemids created many new VH/VL combinations. The library was calculated to have a diversity of 1.7 x 10(11) and validated by the selection of antibodies against six different protein antigens. This library provides the basis for further selection of antibody-based drugs. It is the first time to report that XL2-blue MRF' can be used to improve the diversity of the library in the recombination system.
Adult
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Escherichia coli
;
genetics
;
immunology
;
Genetic Vectors
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Humans
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Immunoglobulin Heavy Chains
;
genetics
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Immunoglobulin Light Chains
;
genetics
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Immunoglobulin Variable Region
;
genetics
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Infant, Newborn
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Integrases
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metabolism
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Lymphocytes
;
immunology
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Peptide Library
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Recombination, Genetic
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genetics
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Single-Chain Antibodies
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genetics
;
metabolism
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Transformation, Genetic
6.Optimization of the preparation process for fusion protein Fv-LDP that composes lidamycin apoprotein and single-chain Fv antibody directed against type IV collagenase.
Rui-Juan GAO ; Chun-Yan ZHAO ; Dian-Dong LI ; Yong-Su ZHEN
Acta Pharmaceutica Sinica 2013;48(10):1563-1569
This study is to optimize the preparation process of fusion protein Fv-LDP which was expressed in the form of inclusion body and consisted of lidamycin apoprotein LDP and single-chain Fv antibody (scFv) directed against type IV collagenase. The preparation and the dissolution of inclusion body, the immobilized metal affinity chromatography of the target protein and the renaturization by stepwise dialysis were optimized by single-factor analysis or orthogonal design. In addition, the refolded fusion protein Fv-LDP was refined by Sephadex G-75 chromatography followed by fluorescence-activated cell sorter (FACS)-based saturation binding assay to measure its antigen-binding activity. After optimization of the process, the purity of fusion protein Fv-LDP existed in the inclusion body was 63.9% and the corresponding solubility was 95.7%; Under denaturing conditions, the purity of fusion protein Fv-LDP was more than 95% after the purification process. The percentage of monomeric fusion protein Fv-LDP was 60% after the refolding process, while it was further refined to 85% which was 5.6-fold higher than that of the initial refolding condition. The refined fusion protein Fv-LDP could bind to human lung adenocarcinoma PAa cells and human hepatoma BEL-7402 cells with the dissociation constants (Kd) of 0.176 micromol x L(-1) and 0.904 micromol x L(-1), respectively. The preparation process of fusion protein Fv-LDP has been successfully optimized, which provides the experimental basis for the production and future development of fusion protein Fv-LDP, and might serve as a relatively practical system for the preparation of other scFv-based proteins expressed in the form of inclusion body.
Adenocarcinoma
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metabolism
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pathology
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Aminoglycosides
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chemistry
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metabolism
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Antibiotics, Antineoplastic
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chemistry
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metabolism
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Apoproteins
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chemistry
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metabolism
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Carcinoma, Hepatocellular
;
metabolism
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pathology
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Cell Line, Tumor
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Collagenases
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immunology
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Enediynes
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chemistry
;
metabolism
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Escherichia coli
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chemistry
;
metabolism
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Humans
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Inclusion Bodies
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chemistry
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metabolism
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Liver Neoplasms
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metabolism
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pathology
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Lung Neoplasms
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metabolism
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pathology
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Protein Binding
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Recombinant Fusion Proteins
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chemistry
;
metabolism
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Single-Chain Antibodies
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chemistry
;
metabolism
7.Characterization of human anti-BAFF scFv-Fc that inhibits the activity of BAFF in vivo.
Meng CAO ; Peng CAO ; Shuang-quan ZHANG ; Ying CHENG ; Huai-jiang YAN
Acta Pharmaceutica Sinica 2012;47(10):1336-1340
To investigate the effects of human anti-BAFF scFv-Fc against the hsBAFF, ICR mice were randomly divided into six groups: control, hsBAFF (1 mg x kg(-1)), hsBAFF (1 mg x kg(-1)) + Ab (1 mg x kg(-1)), hsBAFF (1 mg x kg(-1)) + Ab (2 mg x kg(-1)), hsBAFF (1 mg x kg(-1)) + human IgG (1 mg x kg(-1)) and hsBAFF (1 mg x kg(-1)) + human IgG (2 mg x kg(-1)) groups. The effects of scFv-Fc administration on the proliferation of B lymphocytes were evaluated using an MTT assay. The titres of antibody in the serum and B lymphocytes differentiation were assessed by ELISA and flow cytometry, respectively. The results showed that administration of scFv-Fc to mice injected with hsBAFF significantly prevented human BAFF-induced increases in splenic B cell numbers and serum immunoglobulin levels. Furthermore, this fully human antibody would avoid inducing the human anti-mouse antibody (HAMA) response when used in humans. These findings suggest that the compact antibody may be useful in therapeutic or diagnostic application of the BAFF-associated autoimmune diseases in human.
Animals
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B-Cell Activating Factor
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immunology
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metabolism
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B-Lymphocytes
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cytology
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Body Weight
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Cell Differentiation
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Cell Proliferation
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Cells, Cultured
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Female
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Humans
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Immunoglobulin Fc Fragments
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immunology
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metabolism
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Immunoglobulin G
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blood
;
immunology
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Immunoglobulin M
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blood
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Mice
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Mice, Inbred ICR
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Random Allocation
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Recombinant Fusion Proteins
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immunology
;
metabolism
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Single-Chain Antibodies
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immunology
;
metabolism
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Spleen
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cytology
8.Ribosome display screening of a novel human anti-IgE scFv fragment.
Yong-xia ZHANG ; Bao-cheng WANG ; Xin YU ; Yun-jian DAI ; Yong-zhi HE ; Cong CONG ; Yong XIA ; Ming-rong WANG
Acta Pharmaceutica Sinica 2012;47(10):1329-1335
Total mRNA was extracted from lymphocytes separated from the peripheral blood of allergic patients, and then variable region of heavy chain (VH) and variable region of light chain (VL) cDNA library were constructed by RT-PCR. Human scFv templates for rabbit reticulocyte lysate ribosome display were assembled by primers and linker peptide (Gly4Ser)3. mRNA bound in antibody-ribosome-mRNA complexes was recovered using in-situ single primer RT-PCR, and three rounds of anti-IgE scFv DNA were enriched. The target DNA fragments were double enzyme digested and ligated into plasmid pET22b (+), followed by transformation in E. coli Rosseta (DE3). Positive clones were screened using clone PCR, Dot blotting and antigen ELISA. The correct lengths of VH (400 bp) and VL (710 bp) PCR products were obtained. The expected 1,000 bp ribosome display templates were also observed in agarose gel electrophoresis. After three rounds of ribosome display target sequences were effectively enriched, leading to a library of 10(13) members. Antibodies with the highest ELISA value for IgE were generated in the strain pET-IgE-6. A human anti-IgE scFv library was successfully constructed as described herein. Ribosome display using single primer in-situ RT-PCR as the recovery procedure effectively enriched target sequences. Anti-IgE scFv with high affinity and specificity were identified. The prepared human anti-IgE scFv fragment might be self-developed to a lead drug for treating asthma. Our study provides an alternative method for rapid discovery of human antibodies of therapeutic importance.
Amino Acid Sequence
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Antibodies, Anti-Idiotypic
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genetics
;
isolation & purification
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Antibody Affinity
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Asthma
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blood
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Base Sequence
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DNA, Complementary
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metabolism
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Escherichia coli
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metabolism
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Humans
;
Immunoglobulin Heavy Chains
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genetics
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Immunoglobulin Light Chains
;
genetics
;
Immunoglobulin Variable Region
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genetics
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Lymphocytes
;
chemistry
;
Peptide Library
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RNA, Messenger
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isolation & purification
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Recombination, Genetic
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genetics
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Ribosomes
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chemistry
;
genetics
;
immunology
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Single-Chain Antibodies
;
genetics
;
isolation & purification
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Transformation, Genetic
9.Affinity maturation of a single chain antibody against VEGFR2 by hydrophilic shuffling.
Hai-di QI ; Xiao-niu MIAO ; Juan ZHANG ; Kai GU ; Si-wei ZHANG ; Min WANG
Acta Pharmaceutica Sinica 2012;47(10):1323-1328
Abstract: This study is to improve the affinity of scFv-AK404R against VEGFR2. The secondary mutational library was constructed by hydrophilic shuffling in CDR3 region of the heavy chain. VEGFR2-specific screening was performed by phage display technology and the protein of mutants was expressed in periplasm of E.coli HB2151 and purified by affinity chromatography. The affinity constant of scFvs was measured by competitive ELISA, and the structure of scFvs was analyzed by bioinformatics. The result showed that a library with 6.4x10(5) scFv members was established by electro-transformation. Two mutated clones with high absorbance value were isolated after screening. After purification by affinity chromatography, electrophoretically pure scFv proteins were obtained. The competitive ELISA showed that the affinities of WZ01 and WZ02 were three times higher than that of the parental AK404R, and bioinformatics analysis showed that the enlarged contact surface and fitted closely with KDR3 surface may be the reasons for improved affinity. These results suggest that introducing hydrophilic amino acids to the heavy chain CDR3 region is an effective approach to improve the affinity of scFv.
Amino Acid Sequence
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Antibody Affinity
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Chromatography, Affinity
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Computational Biology
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Enzyme-Linked Immunosorbent Assay
;
Escherichia coli
;
metabolism
;
Hydrophobic and Hydrophilic Interactions
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Peptide Library
;
Single-Chain Antibodies
;
genetics
;
immunology
;
isolation & purification
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Vascular Endothelial Growth Factor Receptor-2
;
genetics
;
immunology
;
metabolism
10.Construction and expression of an anti-EGFR/anti-KDR bispecific single-chain diabody.
Ya-qiong ZHOU ; Juan ZHANG ; Hai-zhen JIN ; Yuan HE ; Tong WANG ; Min WANG
Acta Pharmaceutica Sinica 2012;47(10):1317-1322
Bispecific antibodies have been exploited as both cancer immunodiagnostics and cancer therapeutics, which have shown promises in clinical trials in cancer imaging and therapy. To improve the anti-tumor effect, an scDb (bispecific single-chain diabody) was constructed from the variable domain genes of two scFvs (single-chain variable fragment antibodies) directed against human EGFR (epidermal growth factor receptor) and VEGFR2 (vascular endothelial growth factor receptor 2) extracellular domains. The anti-EGFR/ anti-KDR scDb was constructed into pHEN2 plasmid and expressed in Escherichia coli HB2151 host. After purification by one-step affinity chromatography of IMAC, scDb protein was characterized by Western blotting. The yield of scDb protein was 570 microg per liter medium. scDb bound to EGFR as efficiently as the parental antibody scFv-E10, while a little bit weaker than the parental antibody scFv-AK404R when bound to KDR. In conclusion, the scDb protein could bind both EGFR and KDR specifically and could be applied for further anti-tumor research.
Antibodies, Bispecific
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biosynthesis
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genetics
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Escherichia coli
;
metabolism
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Humans
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Plasmids
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Protein Binding
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Receptor, Epidermal Growth Factor
;
immunology
;
Single-Chain Antibodies
;
biosynthesis
;
genetics
;
Vascular Endothelial Growth Factor Receptor-2
;
immunology

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