1.Identification and expression analysis of TCP family members in tobacco (Nicotiana tabacum L.).
Shize WANG ; Yun LI ; Yucui HAN ; Shizhou YU ; Shuang WANG ; Yong LIU ; Xiaohu LIN
Chinese Journal of Biotechnology 2024;40(1):226-238
TCP family as plant specific transcription factor, plays an important role in different aspects of plant development. In order to screen TCP family members in tobacco, the homologous sequences of tobacco and Arabidopsis TCP family were identified by genome-wide homologous alignment. The physicochemical properties, phylogenetic relationships and cis-acting elements were analyzed by bioinformatics. The homologous genes of AtTCP3/AtTCP4 were screened, and RT-qPCR was used to detect the changes of gene expression upon 20% PEG6000 treatment. The results show that tobacco contains 63 TCP family members. Their amino acid sequence length ranged from 89 aa to 596 aa, and their protein hydropathicity grand average of hydropathicity (GRAVY) ranged from -1.147 to 0.125. The isoelectric point (pI) ranges from 4.42 to 9.94, the number of introns is 0 to 3, and the subcellular location is all located in the nucleus. The results of conserved domain and phylogenetic relationship analysis showed that the tobacco TCP family can be divided into PCF, CIN and CYC/TB1 subfamilies, and each subfamily has a stable sequence. The results of cis-acting elements in gene promoter region showed that TCP family genes contain low docile acting elements (LTR) and a variety of stress and metabolic regulation related elements (MYB, MYC). Analysis of gene expression patterns showed that AtTCP3/AtTCP4 homologous genes (NtTCP6, NtTCP28, NtTCP30, NtTCP33, NtTCP42, NtTCP57, NtTCP63) accounted for 20% PEG6000 treatment significantly up-regulated/down-regulated expression, and NtTCP30 and NtTCP57 genes were selected as candidate genes in response to drought. The results of this study analyzed the TCP family in the tobacco genome and provided candidate genes for the study of drought-resistance gene function and variety breeding in tobacco.
Nicotiana/genetics*
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Phylogeny
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Plant Breeding
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Amino Acid Sequence
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Arabidopsis
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Polyethylene Glycols
2.Efficacy and safety of oral atenolol for the treatment of infantile haemangiomas: a single-arm meta-analysis
Zhisheng ZHU ; Xianying ZHOU ; Xingong LIN ; Shiquan WU ; Chaoyang WANG ; Shize ZHU
Chinese Journal of Plastic Surgery 2023;39(11):1192-1203
Objective:To investigate the efficacy, safety and recurrence rate of oral atenolol in the treatment of infantile hemangioma, so as to provide evidence-based medicine basis and reference for clinic.Methods:Search on the following public databases from January 1, 2008 to June 13, 2022: Web of Science, PubMed, Cochrane Library, Embase, U. S. National Library of Medicine Clinical Trials Registry Platform; China National Knowledge Infrastructure(CNKI), Chinese Biomedical Literature Service System(SinoMed), Chinese Science and Technology Journal Database and Wanfang Data. According to inclusion and exclusion criteria, studies on oral atenolol for the treatment of infantile hemangioma were selected. The outcome indicators were efficiency (complete response rate), incidence of adverse effects and recurrence rate. The single-arm meta-analysis was performed using R software version 4.1.2. Egger’s test was employed and funnel plots were drawn to assess publication bias in the literature.Results:A total of 14 studies were included, comprising 5 randomized controlled trials, 5 single-arm studies, 3 non-randomized controlled trials, and 1 case-control study. The oral administration of atenolol for the treatment of infantile hemangiomas resulted in an efficacy rate (complete remission rate) of 62% (95% CI 52%~71%). The incidence rate of adverse reactions related to the digestive system was 18% (95% CI 7%~30%), while that related to β2 receptor blockade was 4% (95% CI 2%~6%), central nervous system-related adverse reactions occurred at a rate of 10% (95% CI 5%~16%), the recurrence rate was 5% (95% CI 2%~9%). Egger’s test indicated that there was no significant publication bias in the efficacy rate, central nervous system-related adverse reaction rate, and gastrointestinal-related adverse reaction rate of oral atenolol treatment for infantile hemangiomas ( P>0.05). The sensitivity analysis for the efficacy rate, adverse reaction rate, and recurrence rate of oral atenolol treatment for infantile hemangiomas suggested that the result were stable and reliable. Conclusion:Oral administration of atenolol for the treatment of infantile hemangiomas demonstrates significant efficacy, fewer adverse reactions, and a low recurrence rate, making it a promising candidate as a reasonable alternative to oral propranolol for treating infantile hemangiomas.
3.Analysis of immune microenvironment and potential sensitive drugs in esophageal squamous cell carcinoma based on GEO database and bioinformatics method
Shize PAN ; Ning LI ; Congkuan SONG ; Bo HAO ; Zilong LU ; Tao FAN ; Donghang LI ; Lin ZHANG ; Heng MENG ; Kai LAI ; Qing GENG
Chinese Journal of Clinical Thoracic and Cardiovascular Surgery 2023;30(09):1251-1260
Objective To construct a prognostic model of esophageal squamous cell carcinoma (ESCC) based on immune checkpoint-related genes and explore the potential relationship between these genes and the tumor microenvironment (TME). Methods The transcriptome sequencing data and clinical information of immune checkpoint genes of samples from GSE53625 in GEO database were collected. The difference of gene expression between ESCC and normal paracancerous tissues was evaluated, and the drug sensitivity of differentially expressed genes in ESCC was analyzed. We then constructed a risk model based on survival-related genes and explored the prognostic characteristics, enriched pathway, immune checkpoints, immune score, immune cell infiltration, and potentially sensitive drugs of different risk groups. Results A total of 358 samples from 179 patients were enrolled, including 179 ESCC samples and 179 corresponding paracancerous tissues. There were 33 males and 146 females, including 80 patients≤60 years and 99 patients>60 years. 39 immune checkpoint genes were differentially expressed in ESCC, including 14 low expression genes and 25 high expression genes. Drug sensitivity analysis of 8 highly expressed genes (TNFRSF8, CTLA4, TNFRSF4, CD276, TNFSF4, IDO1, CD80, TNFRSF18) showed that many compounds were sensitive to these immunotherapy targets. A risk model based on three prognostic genes (NRP1, ICOSLG, HHLA2) was constructed by the least absolute shrinkage and selection operator analysis. It was found that the overall survival time of the high-risk group was significantly lower than that of the low-risk group (P<0.001). Similar results were obtained in different ESCC subtypes. The risk score based on the immune checkpoint gene was identified as an independent prognostic factor for ESCC. Different risk groups had unique enriched pathways, immune cell infiltration, TME, and sensitive drugs. Conclusion A prognostic model based on immune checkpoint gene is established, which can accurately stratify ESCC and provide potential sensitive drugs for ESCC with different risks, thus providing a possibility for personalized treatment of ESCC.
4.Efficacy and safety of oral atenolol for the treatment of infantile haemangiomas: a single-arm meta-analysis
Zhisheng ZHU ; Xianying ZHOU ; Xingong LIN ; Shiquan WU ; Chaoyang WANG ; Shize ZHU
Chinese Journal of Plastic Surgery 2023;39(11):1192-1203
Objective:To investigate the efficacy, safety and recurrence rate of oral atenolol in the treatment of infantile hemangioma, so as to provide evidence-based medicine basis and reference for clinic.Methods:Search on the following public databases from January 1, 2008 to June 13, 2022: Web of Science, PubMed, Cochrane Library, Embase, U. S. National Library of Medicine Clinical Trials Registry Platform; China National Knowledge Infrastructure(CNKI), Chinese Biomedical Literature Service System(SinoMed), Chinese Science and Technology Journal Database and Wanfang Data. According to inclusion and exclusion criteria, studies on oral atenolol for the treatment of infantile hemangioma were selected. The outcome indicators were efficiency (complete response rate), incidence of adverse effects and recurrence rate. The single-arm meta-analysis was performed using R software version 4.1.2. Egger’s test was employed and funnel plots were drawn to assess publication bias in the literature.Results:A total of 14 studies were included, comprising 5 randomized controlled trials, 5 single-arm studies, 3 non-randomized controlled trials, and 1 case-control study. The oral administration of atenolol for the treatment of infantile hemangiomas resulted in an efficacy rate (complete remission rate) of 62% (95% CI 52%~71%). The incidence rate of adverse reactions related to the digestive system was 18% (95% CI 7%~30%), while that related to β2 receptor blockade was 4% (95% CI 2%~6%), central nervous system-related adverse reactions occurred at a rate of 10% (95% CI 5%~16%), the recurrence rate was 5% (95% CI 2%~9%). Egger’s test indicated that there was no significant publication bias in the efficacy rate, central nervous system-related adverse reaction rate, and gastrointestinal-related adverse reaction rate of oral atenolol treatment for infantile hemangiomas ( P>0.05). The sensitivity analysis for the efficacy rate, adverse reaction rate, and recurrence rate of oral atenolol treatment for infantile hemangiomas suggested that the result were stable and reliable. Conclusion:Oral administration of atenolol for the treatment of infantile hemangiomas demonstrates significant efficacy, fewer adverse reactions, and a low recurrence rate, making it a promising candidate as a reasonable alternative to oral propranolol for treating infantile hemangiomas.
5.Study on the mitochondrial mass of peripheral blood immune cells in patients with schizophrenia
Tianyi ZHAO ; Shize LIN ; Yichuan LIN ; Xiaofeng HUANG ; Jinyi WANG
Chinese Journal of Psychiatry 2022;55(4):254-262
Objective:To analyze the differences in the variation characteristics of peripheral blood immune cell subsets and their mitochondrial mass between schizophrenia patients (SZ) and healthy individuals (HC).Methods:The selected subjects included 487 schizophrenic patients aged 20 to 70 (schizophrenia group), who were diagnosed and treated in Quanzhou Third Hospital from February 2021 to October 2021, and 175 healthy individuals (control group) of the same age and during the same period. Their age, gender, years of education, and years of illness were collected. The psychopathological symptoms of the patients were assessed by PANSS (Positive and Negative Syndrome Scale). The flow cytometry was used to analyze the percentage, the absolute count of T cells and their subsets in peripheral blood, the mitochondria mass (MM) and the variation in the single-cell mitochondria mass (SCMM) of these T cells. To determine whether the mitochondrial mass parameters were consistent with clinical manifestations, the test data collected from 32 first diagnosed patients were compared before and after treatment. The analysis methods involved in the study mainly include the Human Lymphocyte Mitochondrial Function Analysis System (HLMFAS) used to calibrate of the mitochondrial test results, the SPSS software used for statistical analysis, and the flowjo software used for the t-SNE dimension reduction analysis of the flow cytometry data.Results:The SCMM value of CD8 +T cells (abbreviated as CD8 +) in SZ was significantly higher than those values in HC ( P<0.001). The threshold of the ROC curve of the SCMM(CD8 +) between SZ and HC was greater than 95.84. SZ showed a significantly higher SCMM(CD8 +) value than HC across all age groups (20-70 years). For the 32 first diagnosed patients, the test data were monitored before and after treatment. The results indicated a positive linear correlation between the SCMM of CD8 + and the PNASS data ( P<0.05,ρ (Spearman)>0). Conclusion:Schizophrenic patients have abnormal mitochondrial metabolism in their peripheral immune cells with an up-regulated SCMM, indicating possible damage to the mitochondria.
6.Study on the mitochondrial mass of peripheral blood immune cells in patients with schizophrenia
Tianyi ZHAO ; Shize LIN ; Yichuan LIN ; Xiaofeng HUANG ; Jinyi WANG
Chinese Journal of Psychiatry 2022;55(4):254-262
Objective:To analyze the differences in the variation characteristics of peripheral blood immune cell subsets and their mitochondrial mass between schizophrenia patients (SZ) and healthy individuals (HC).Methods:The selected subjects included 487 schizophrenic patients aged 20 to 70 (schizophrenia group), who were diagnosed and treated in Quanzhou Third Hospital from February 2021 to October 2021, and 175 healthy individuals (control group) of the same age and during the same period. Their age, gender, years of education, and years of illness were collected. The psychopathological symptoms of the patients were assessed by PANSS (Positive and Negative Syndrome Scale). The flow cytometry was used to analyze the percentage, the absolute count of T cells and their subsets in peripheral blood, the mitochondria mass (MM) and the variation in the single-cell mitochondria mass (SCMM) of these T cells. To determine whether the mitochondrial mass parameters were consistent with clinical manifestations, the test data collected from 32 first diagnosed patients were compared before and after treatment. The analysis methods involved in the study mainly include the Human Lymphocyte Mitochondrial Function Analysis System (HLMFAS) used to calibrate of the mitochondrial test results, the SPSS software used for statistical analysis, and the flowjo software used for the t-SNE dimension reduction analysis of the flow cytometry data.Results:The SCMM value of CD8 +T cells (abbreviated as CD8 +) in SZ was significantly higher than those values in HC ( P<0.001). The threshold of the ROC curve of the SCMM(CD8 +) between SZ and HC was greater than 95.84. SZ showed a significantly higher SCMM(CD8 +) value than HC across all age groups (20-70 years). For the 32 first diagnosed patients, the test data were monitored before and after treatment. The results indicated a positive linear correlation between the SCMM of CD8 + and the PNASS data ( P<0.05,ρ (Spearman)>0). Conclusion:Schizophrenic patients have abnormal mitochondrial metabolism in their peripheral immune cells with an up-regulated SCMM, indicating possible damage to the mitochondria.
7.Preventive medicine curriculum system in training program of clinical medicine in the era of Healthy China
Hongying SHI ; Shize WANG ; Xinjun YANG ; Lei LIN ; Junyong HU
Chinese Journal of Epidemiology 2020;41(7):1155-1159
Objective:To understand the provision of preventive medicine curriculum system in the training programs of clinical medicine in the era of Healthy China.Methods:A total of 36 training programs of clinical medicine were selected from different areas of China for a statistical analysis on their basic information, involvement of concept of preventive medicine in program objectives, and provision of preventive medicine curriculum system.Results:Of all the 36 training programs of clinical medicine, 22(61%) have no mentions of prevention medicine in their program objectives; only one university’s training program states preventive medicine together with basic medicine and clinical medicine as one of the three main disciplines. The total class hours for the core courses of preventive medicine (hygiene, medical statistics, epidemiology, evidence-based medicine, and social medicine) range from 80 to 252, with an average of (156.7±43.2) hours. The average percentage of class hours for preventive medicine courses among the total class hours is 4.3%±1.1% (range: 2.5%-7.5%), and obvious differences exist among universities.Conclusions:In current training programs of clinical medicine, the proportion of prevention medicine curriculum is insufficient, the percentage of hours for preventive medicine course is very low, and the differences among various universities are obvious. It is urgently needed to strengthen preventive medicine curriculum in training programs for clinical medical students in new era. It is suggested to further promote the concept of putting prevention first, improve the curriculum system of clinical medicine, intensify the integrated development preventive medicine and clinical medicine and pay attention to clinical research ability enhancement for the further improvement of training program of clinical medicine.
8. Using the facial artery perforator-based nasolabial para-nasal advanced flap to repair the medial canthus and inner lower eyelid skin defects
Chaoyang WANG ; Xingong LIN ; Xianying ZHOU ; Shiquan WU ; Youyi WU ; Shize ZHU
Chinese Journal of Plastic Surgery 2019;35(1):49-52
Objective:
To discuss the surgical method and clinical effect of applying the facial artery perforator-based nasolabial para-nasal advanced flap to repair the medial canthus and inner lower eyelid skin defects.
Methods:
The advance nasolabial para-nasal perforator flap supplied by facial artery, was used to repair the medial canthus and inner lower eyelid skin defects, caused by dermatoma excision.
Results:
All 18 flaps completely survived. The detects in the medial canthus andinner lower eyelid, and the donor sites in the nasolabial fold were primary healed.The medial canthus and inner lower eyelid were recovery satisfactorily.The flaps were not bloated, and the contour and texture of flaps were similar to adjacent tissue, with no need of secondary repair.The donor site was successfully hidden in the nasolabial dermatoglyph.
Conclusions
Nasolabial para-nasal perforator flap is easily obtained, reliable in blood supply, and flexible in transfer. It has a wide range of movement and is easy to advance, so as to repair medial canthus andinner lower eyelid defect. With above advantages, this flap is worthy towidely popularize.
9.Impact factors related to HIV voluntary counseling and testing of pregnant women in Liangshan Yi Autonomous Prefecture, Sichuan.
Siwei LI ; Shize ZHANG ; Yanxi LI ; Weiting YANG ; Lin JIANG ; Xing CHANG ; Hui LIU ; Ying HUANG ; Xin WEN ; Yanfang YANG ; Hailiang YU ; Fengyu MIAO ; Zhongfu LIU
Chinese Journal of Preventive Medicine 2015;49(11):1014-1016
China
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Counseling
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Female
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HIV Infections
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diagnosis
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Humans
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Pregnancy

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