1.Transcriptomic analysis of suspended Vero cells and reduction of cellular autophagy by epidermal growth factor.
Muzi LI ; Na SUN ; Runsheng PENG ; Fangfang MA ; Jiamin WANG ; Zilin QIAO ; Jianguo CHEN ; Abudureyimu AYIMUGL
Chinese Journal of Biotechnology 2025;41(4):1671-1689
The culture of suspended Vero cells is facing difficulties such as low cell viability and long doubling time. To investigate the main reasons for the slow growth and low viability of suspended Vero cells, this study conducted transcriptomic analysis of suspended Vero cells (Vero-XF) and adherent Vero cells (Vero-AD) to screen the differentially expressed genes (DEGs) affecting the growth of suspended cells. In addition, epidermal growth factor (EGF) was supplemented to the culture system to improve the growth of Vero-XF. The results showed that compared with the Vero-AD group, the Vero-XF group had 7 376 significant DEGs. Kyoto encyclopedia of genes and genomes enrichment analysis revealed that the DEGs were mainly enriched in the autophagy and mitophagy pathways. Eleven DEGs were selected and verified by quantitative real-time PCR, which showed up-regulated expression of ATG9B, WIPI2, LAMP2, OPTN, Rab7a, and DEPTOR and down-regulated expression of ATG4D, being consistent with the results of transcriptomic analysis. In addition, the Vero-XF group showed significantly up-regulated expression of ATG101, ATG2A, and STX17 and insignificant change in the expression of NBR1, compared with the Vero-AD group. The protein levels of LC3 and P62 in Vero-XF and Vero-AD were determined by Western blotting, which showed up-regulated expression of LC3Ⅱ/Ⅰ and down-regulated expression of P62 in Vero-XF, indicating a higher level of autophagy. Finally, the exogenous supplementation of EGF at 10, 20, and 30 μg/L in the culture system reduced the autophagy level of Vero-XF by 22.35%, 48.15%, and 71.29%, increased the specific growth rate by 15.48%, 33.33%, and 57.14%, and decreased the apoptosis rate by 2.84%, 15.46%, and 16.23%, respectively. The results of this study preliminarily reveal that the activation of autophagy is one of the reasons for the slow growth of Vero-XF, which provides reference for the subsequent culture of suspended Vero cells.
Animals
;
Vero Cells
;
Autophagy/genetics*
;
Chlorocebus aethiops
;
Epidermal Growth Factor/pharmacology*
;
Gene Expression Profiling
;
Transcriptome
;
Cell Survival
2.Pupillometry reveals hyper-arousal in response to auditory stimuli in autistic children.
Ci SONG ; Runsheng MA ; Wei NI ; Xinyue PENG ; Xue LI ; Ruoxi SHI ; Yuanping ZHANG ; Li YI
Journal of Zhejiang University. Science. B 2024;25(11):996-1008
Atypical sensory responsivity is widely reported in autistic individuals and is related to elevated functional difficulties. Dynamically, altered initial responses and/or habituation rates could underlie their atypical averaged responses to repeated sensory stimuli. In this study we aimed to measure the arousal level in response to different types of auditory stimuli and the dynamic change of atypical arousal level using pupillometry in autistic children. In Experiment 1, 43 autistic children and 49 neurotypical (NT) children were asked to passively listen to a mild sound and an aversive sound repeatedly. In Experiment 2, 39 autistic children and 44 NT children who went through Experiment 1 listened to a gradually emerging non-startling sound and a suddenly emerging startling sound in a random order. We found that the autistic group showed hyper-arousal in response to the aversive sound and the startling sound as reflected by their larger change in pupil area. In comparison, these autistic children demonstrated normal arousal in response to the mild sound and the non-startling sound. Dynamically, the autistic group had a larger peak pupil area change than the NT group in the first trial and a normal habituation rate to the aversive sound. In summary, our results suggest hyper-arousal to aversive and startling stimuli and the role of larger initial responses in hyper-arousal in autism. Minimizing aversive and startling sensory stimuli or gradually increasing the volume of aversive auditory stimuli to allow autistic children to adapt using the principle of habituation is recommended to reduce the arousal level and problematic behaviors of autistic children.
Humans
;
Male
;
Child
;
Female
;
Acoustic Stimulation
;
Autistic Disorder/physiopathology*
;
Arousal/physiology*
;
Pupil/physiology*
;
Habituation, Psychophysiologic/physiology*
;
Auditory Perception
;
Child, Preschool
3.SmProt:A Reliable Repository with Comprehensive Annotation of Small Proteins Identified from Ribosome Profiling
Li YANYAN ; Zhou HONGHONG ; Chen XIAOMIN ; Zheng YU ; Kang QUAN ; Hao DI ; Zhang LILI ; Song TINGRUI ; Luo HUAXIA ; Hao YAJING ; Chen RUNSHENG ; Zhang PENG ; He SHUNMIN
Genomics, Proteomics & Bioinformatics 2021;19(4):602-610
Small proteins specifically refer to proteins consisting of less than 100 amino acids translated from small open reading frames (sORFs), which were usually missed in previous genome annotation. The significance of small proteins has been revealed in current years, along with the discovery of their diverse functions. However, systematic annotation of small proteins is still insufficient. SmProt was specially developed to provide valuable information on small proteins for scientific community. Here we present the update of SmProt, which emphasizes reliability of translated sORFs, genetic variants in translated sORFs, disease-specific sORF translation events or sequences, and remarkably increased data volume. More components such as non-ATG translation initiation, function, and new sources are also included. SmProt incorporated 638,958 unique small proteins curated from 3,165,229 primary records, which were computationally predicted from 419 ribosome profiling (Ribo-seq) datasets or collected from literature and other sources from 370 cell lines or tissues in 8 species (Homo sapiens, Mus musculus, Rattus norvegicus, Drosophila melanogaster, Danio rerio, Saccharomyces cere-visiae, Caenorhabditis elegans, and Escherichia coli). In addition, small protein families identified from human micro-biomes were also collected. All datasets in SmProt are free to access, and available for browse, search, and bulk downloads at http://bigdata.ibp.ac.cn/SmProt/.
4. Retinal artery occlusion and cerebral infarction caused by injection of hyaluronic acid: a clinical case analysis
Chunhua LI ; Weimei MA ; Runsheng WANG ; Xiaoqin LEI ; Huping SONG ; Tingjie ZHOU ; Peng LYU ; Fang CHAI
Chinese Journal of Medical Aesthetics and Cosmetology 2019;25(6):452-455
Objective:
To summarize the clinical manifestations and treatment of retinal artery occlusion and cerebral infarction caused by facial injection of hyaluronic acid.
Methods:
Fifteen cases (15 eyes) with vision lose caused by facial cosmetic injection of hyaluronic acid visited Xi'an No.4 Hospital from December 2010 to January 2017. The clinical data were collected such as general medical history and treatment methods, and follow-up for 1 year.
Results:
All patients were female, 22-41 years old, with average age of 33. All patients were injected with hyaluronic acid. For 8 patients the fillers were injected in the forehead, 3 patients were in the glabellar region, 3 patients were in the nasolabial fold, and 1 patient was in the temporal of left eye. All patients had vision lose after injection, the visiting time was 1 to 6 hours. 13 patients were central retinal artery occlusion (CRAO). 1 patient was retinal branch artery occlusion (BRAO), 1 patient was ischemic optic neuropathy (ION), 13 patients manifested as no light perception (NLP), 1 patient was 0.6, 1 patient was CF/30 cm, and 14 patients with cerebral infarction, manifested as headache, dizziness. All patients were given emergency treatment, and 9 patients had treated with interventional thrombolysis therapy. After treatment 11 patients, visual acuity had no significant improvement, but 4 patients improved. Headache, dizziness symptoms disappeared, but cerebral infarction lesions still existed on MRI.
Conclusions
Human face is a rich blood supply; vision loss and cerebral infarction could occur after injection of hyaluronic acid. After urgent treatment visual acuity is not improved obviously, eventually leading to irreversible visual impairment or even loss.
5.The value of plasma C-peptide levels in early prediction of type 2 diabetes mellitus with peripheral sensory neuropathy
Yan DENG ; Yangyou LIU ; Fen LIANG ; Caixiu CHEN ; Runsheng LI ; Wenhong PENG
Chinese Journal of Postgraduates of Medicine 2014;37(16):31-33
Objective To explore the value of plasma C-peptide levels in early prediction of type 2 diabetes mellitus with peripheral sensory neuropathy.Methods The vibration perception threshold,pain,temperature sensation,touch-pressure sensation,ankle reflex was detected in 500 eases of type 2 diabetes mellitus,and the patients were divided into 4 groups according to peripheral sensory nerve test results:normal group (159 cases),mildly abnormal group (120 cases),moderately abnormal group (121 cases) and severely abnormal group (100 cases).Fasting and 2-hour postprandial C-peptide levels were determined and analysed with peripheral sensory nerve changes.The receiver-operating characteristic (ROC) curve was used to find the best critical point for diagnosis of diabetic peripheral sensory neuropathy.Results The fasting C-peptide among 4 groups had no significant difference (F =1.632,P >0.05).Two-hour postprandial C-peptide from normal group to mildly abnormal group and then moderately abnormal group gradually increased [(1.110 ± 0.526),(1.324 ± 0.490),(1.573 ± 0.716) μ g/L],while 2-hour postprandial C-peptide in severely abnormal group was significantly decreased and lower than that in normal group,and there were significant differences (P< 0.05).The max Youden Index was 0.366 when 2-hour postprandial C-peptide was 1.173 μ g/L.Conclusions The fasting C-peptide might be not related to early diabetic peripheral sensory neuropathy,but 2-hour postprandial C-peptide might be closely related to early diabetic peripheral sensory neuropathy.It is helpful to detect the early diabetic peripheral sensory neuropathy if we can take a dynamical observation of 2-hour postprandial C-peptide.
6.Light-induced protein translocation by genetically encoded unnatural amino acid in Caenorhabditis elegans.
Hao CHANG ; Mei HAN ; Wenming HUANG ; Guifeng WEI ; Juanjuan CHEN ; Peng R CHEN ; Runsheng CHEN ; Junlong ZHANG ; Tao XU ; Pingyong XU
Protein & Cell 2013;4(12):883-886
Animals
;
Caenorhabditis elegans
;
metabolism
;
radiation effects
;
Caenorhabditis elegans Proteins
;
genetics
;
metabolism
;
Light
;
Lysine
;
analogs & derivatives
;
genetics
;
metabolism
;
Promoter Regions, Genetic
;
Protein Transport
;
RNA, Transfer
;
genetics
;
metabolism
;
Tumor Necrosis Factor Ligand Superfamily Member 14
;
metabolism

Result Analysis
Print
Save
E-mail