1.Whole genome sequencing and analysis of multidrug resistant ST314 Salmonella Kentucky from a broiler slaughterhouse
Jia-rui LI ; Rui-yuan SUN ; Pei-jie HE ; Hao-tian LIU ; Ru-yi KUANG ; Jing XIA ; Min CUI ; Yong HUANG ; Li-kou ZOU ; Xin-feng HAN
Chinese Journal of Zoonoses 2025;41(5):537-543
This study investigated the potential pathogenicity and genetic characteristics of ST314 Salmonella Kentucky(S.Ken-tucky)isolates from a broiler slaughterhouse.Antimicrobial susceptibility testing and whole-genome sequencing(WGS)were used to determine antimicrobial resistance,virulence factors,and the presence of antimicrobial resistance genes(ARGs)and mobile genetic elements(MGEs)among the isolates.The three multidrug resistant(MDR)isolates exhibited high resistance to multiple antimicrobial agents.The F4-2S strain exhibited resistance to 14 drugs across seven categories,whereas the F4T strain showed resistance to 13 drugs in the same number of categories.In contrast,the Y23 strain was resistant to nine drugs in six categories.Notably,F4-2S dem-onstrated high homology with F4T:both possessed 13 ARGs distributed across nine categories,in addition to a wide range of virulence factors,including secretion systems and effector proteins.The presence of IncR and IncX1 plasmids significantly enhanced both the antimicrobial resistance and pathogenicity of the isolates.The genome map of Y23 revealed a chromosome alongside two plasmids.The chromosome containedonly one resistance gene but several virulence factors,including the type III secretion system(T3SS),which is crucial for bacterial invasion.The plasmid pY23-1 contained eight types of 19 ARGs.Comparative analysis indicated that pY23-1 ex-hibited high homology with pZ1323SSL0055 and pSAL-045,all of which contained multiple ARGs,thus suggesting critical roles of these genes in the evolution of bacterial resistance.In conclusion,ST314 S.Kentucky demonstrated a complex mechanism of resis-tance coupled with significant pathogenic potential.The ARGs and MGEs in the plasmid contributed to the emergence and dissemina-tion of antimicrobial resistance.The multiple virulence factors present in the chromosome may be key factors driving the increasing virulence of ST314 S.Kentucky.
2.A nomogram predictive model for risk of sepsis in patients with acute liver failure
Rui QI ; Xin WANG ; Zhidan KUANG ; Jinsong MU
Chinese Journal of Nosocomiology 2025;35(10):1496-1501
OBJECTIVE To develop a nomogram model for prediction of the risk of sepsis in the patients with acute liver failure(ALF)and validate its clinical value.METHODS Totally 228 patients with ALF who were treated in the Fifth Medical Center of Chinese PLA General Hospital from Jan.2009 to Mar.2023 were recruited as the re-search subjects and were grouped according to the occurrence of sepsis,the clinical characteristics and results of laboratory tests were collected from the patients.The subjects were brought into multivariate logistic regression a-nalysis after the primary screening with univariate regression analysis,the independent predictive factors were screened out,and the nomogram model was established.The accuracy,calibration accuracy and clinical practica-bility of the model were assessed by means of receiver operating characteristic(ROC)curves,calibration curves and decision curve analysis(DCA).RESULTS Among the 228 patients with ALF,159(69.74%)were diagnosed with sepsis.Totally 6 independent predictive factors were screened out by the multivariate analysis,including age[odd ratio(OR)=1.098,95%CI:1.030 to 1.220],aspartate transaminase(OR=0.998,95%CI:0.996 to 0.999),white blood cells counts(OR=1.037,95%CI:1.020 to 1.064),hemoglobulin(OR=0.981,95%CI:0.962 to 0.998),lactic acid(OR=1.187,95%CI:1.022 to 1.426)and mechanical ventilation(OR=3.463,95%CI:2.340 to 5.125).The area under the curve(AUC)of the nomogram model was 0.864(95%CI:0.807 to 0.921)in the training set,0.817(95%CI:0.717 to 0.918)in the validation set,remarkably better than that of sequential organ failure assessment(SOFA)scores[0.710(95%CI:0.625 to 0.795)and 0.647(95%CI:0.515 to 0.779)].Hosmer-Lemeshow test(P=0.512)and the calibrated curves showed that the predication probability of the model was highly consistent with the actual risk,and DC A indicated that the net clinical benefit was brought more from the model than from SOFA score.CONCLUSION The age,hemoglobulin,aspartate transaminase,white blood cells counts,lactic acid and mechanical ventilation are the independent predictive factors for the sepsis in the ALF patients.The nomogram model established based on the factors has high predictive efficiency and clini-cal application value.
3.A nomogram predictive model for risk of sepsis in patients with acute liver failure
Rui QI ; Xin WANG ; Zhidan KUANG ; Jinsong MU
Chinese Journal of Nosocomiology 2025;35(10):1496-1501
OBJECTIVE To develop a nomogram model for prediction of the risk of sepsis in the patients with acute liver failure(ALF)and validate its clinical value.METHODS Totally 228 patients with ALF who were treated in the Fifth Medical Center of Chinese PLA General Hospital from Jan.2009 to Mar.2023 were recruited as the re-search subjects and were grouped according to the occurrence of sepsis,the clinical characteristics and results of laboratory tests were collected from the patients.The subjects were brought into multivariate logistic regression a-nalysis after the primary screening with univariate regression analysis,the independent predictive factors were screened out,and the nomogram model was established.The accuracy,calibration accuracy and clinical practica-bility of the model were assessed by means of receiver operating characteristic(ROC)curves,calibration curves and decision curve analysis(DCA).RESULTS Among the 228 patients with ALF,159(69.74%)were diagnosed with sepsis.Totally 6 independent predictive factors were screened out by the multivariate analysis,including age[odd ratio(OR)=1.098,95%CI:1.030 to 1.220],aspartate transaminase(OR=0.998,95%CI:0.996 to 0.999),white blood cells counts(OR=1.037,95%CI:1.020 to 1.064),hemoglobulin(OR=0.981,95%CI:0.962 to 0.998),lactic acid(OR=1.187,95%CI:1.022 to 1.426)and mechanical ventilation(OR=3.463,95%CI:2.340 to 5.125).The area under the curve(AUC)of the nomogram model was 0.864(95%CI:0.807 to 0.921)in the training set,0.817(95%CI:0.717 to 0.918)in the validation set,remarkably better than that of sequential organ failure assessment(SOFA)scores[0.710(95%CI:0.625 to 0.795)and 0.647(95%CI:0.515 to 0.779)].Hosmer-Lemeshow test(P=0.512)and the calibrated curves showed that the predication probability of the model was highly consistent with the actual risk,and DC A indicated that the net clinical benefit was brought more from the model than from SOFA score.CONCLUSION The age,hemoglobulin,aspartate transaminase,white blood cells counts,lactic acid and mechanical ventilation are the independent predictive factors for the sepsis in the ALF patients.The nomogram model established based on the factors has high predictive efficiency and clini-cal application value.
4.Whole genome sequencing and analysis of multidrug resistant ST314 Salmonella Kentucky from a broiler slaughterhouse
Jia-rui LI ; Rui-yuan SUN ; Pei-jie HE ; Hao-tian LIU ; Ru-yi KUANG ; Jing XIA ; Min CUI ; Yong HUANG ; Li-kou ZOU ; Xin-feng HAN
Chinese Journal of Zoonoses 2025;41(5):537-543
This study investigated the potential pathogenicity and genetic characteristics of ST314 Salmonella Kentucky(S.Ken-tucky)isolates from a broiler slaughterhouse.Antimicrobial susceptibility testing and whole-genome sequencing(WGS)were used to determine antimicrobial resistance,virulence factors,and the presence of antimicrobial resistance genes(ARGs)and mobile genetic elements(MGEs)among the isolates.The three multidrug resistant(MDR)isolates exhibited high resistance to multiple antimicrobial agents.The F4-2S strain exhibited resistance to 14 drugs across seven categories,whereas the F4T strain showed resistance to 13 drugs in the same number of categories.In contrast,the Y23 strain was resistant to nine drugs in six categories.Notably,F4-2S dem-onstrated high homology with F4T:both possessed 13 ARGs distributed across nine categories,in addition to a wide range of virulence factors,including secretion systems and effector proteins.The presence of IncR and IncX1 plasmids significantly enhanced both the antimicrobial resistance and pathogenicity of the isolates.The genome map of Y23 revealed a chromosome alongside two plasmids.The chromosome containedonly one resistance gene but several virulence factors,including the type III secretion system(T3SS),which is crucial for bacterial invasion.The plasmid pY23-1 contained eight types of 19 ARGs.Comparative analysis indicated that pY23-1 ex-hibited high homology with pZ1323SSL0055 and pSAL-045,all of which contained multiple ARGs,thus suggesting critical roles of these genes in the evolution of bacterial resistance.In conclusion,ST314 S.Kentucky demonstrated a complex mechanism of resis-tance coupled with significant pathogenic potential.The ARGs and MGEs in the plasmid contributed to the emergence and dissemina-tion of antimicrobial resistance.The multiple virulence factors present in the chromosome may be key factors driving the increasing virulence of ST314 S.Kentucky.
5.Visual observation of primary sensory nerve conduction pathways in rats by anterograde tracing with adeno-associated virus
Guanggeng WU ; Ge LI ; Rui KUANG ; Yuanshan ZENG ; Zhaowei ZHU ; Bo HE
Chinese Journal of Microsurgery 2024;47(6):647-654
Objective:To discover a novel and intuitive anterograde tracing method for observing the course of sensory nerve fibers in dorsal root ganglia (DRG).Methods:From July 2022 to August 2023, studies were conducted in the Department of Plastic Surgery of the First Affiliated Hospital of Sun Yat-sen University. Three healthy 1-month old female SD rats, weighed approximately 180-220 g, were randomly selected. An adeno-associated virus carrying a neuron-specific promoter and red fluorescent protein (AAV- syp-mCherry) was prepared. The virus was injected into the spinal roots outside L 4-L 6 DRG through sterile surgery. After 1 month of breeding, L 4-L 6 spinal cord tissue of immunofluorescent staining of the side injected with viral tracer, DRG, sciatic nerve, and plantar skin of the SD rats were collected for immunofluorescent staining of neurofilament protein (NF) and microtubule associated protein 2 (MAP2). Distribution characteristics of AAV-positive nerve fibers were observed using a confocal microscope by average optical density (AOD) . Results:One month after injection of the viral tracer, red markers were visible in the dorsal horn of the L 4-L 6 spinal cord (AOD=0.5419±0.0245), DRG (AOD=0.4917±0.0087), sciatic nerve (AOD=0.6237±0.0634), dermis of plantar skin and skin appendages on the injected side (AOD=0.4943±0.0165). The red fluorescent clusters were found co-labeled with NF-positive nerve fibers or MAP2-positive neurons, it suggested that AAV- syp-mCherry could be transported anterogradely within sensory axons to distant target organs (skin) and offered a long-term image. Conclusion:The anterograde tracing method by adeno-associated virus can effectively show the complete trace of the central and peripheral processes of primary sensory neurons, and can serve as an effective methodology in observation of the pathways of peripheral sensory nerve fibers.
6.Severity of loneliness and factors associated with social and emotional loneliness among the elderly in three districts in Shanghai
Yu-Wen ZHANG ; Ying WANG ; Zhao-Hua XIN ; Jia-Lie FANG ; Rui SONG ; Hao-Cen LI ; Jia-Wen KUANG ; Yu-Ting YANG ; Jing-Yi WANG
Fudan University Journal of Medical Sciences 2024;51(1):1-11
Objective To explore the severity of loneliness among the elderly in communities in Shanghai,and to identify factors associated with social and emotional loneliness respectively.Methods A cross-sectional study was conducted in older adults aged 65 years or above in Pudong New Area,Jing'an District and Huangpu District in Shanghai from Mar to Jun 2021.In Pudong New Area,multi-stage stratified random sampling was conducted based on the age and gender distribution of Shanghai,while in Huangpu District and Jing'an District convenience sampling was conducted.A total of 635 samples were included in the study.Loneliness was assessed using the De Jong Gierveld Loneliness Scale with social and emotional loneliness subscales.Logistic regression analyses were conducted to identify factors associated with social and emotional loneliness.Results Among the 635 participants,only 53 older adults(8.4%)were not lonely.Female(OR=0.46,95%CI:0.31-0.70),higher self-efficacy(OR=0.97,95%CI:0.94-1.00),more objective social support(OR=0.96,95%CI:0.93-0.99)were associated with less severe social loneliness.Meanwhile,higher level of education(secondary education,OR=0.56,95%CI:0.34-0.95;college or above,OR=0.30,95%CI:0.11-0.83)and higher self-efficacy(OR=0.96,95%CI:0.93-0.99)were associated with less severe emotional loneliness,while depression(OR=3.41,95%CI:1.76-6.60)and worse social capital(OR=2.02,95%CI:1.29-3.16)were associated with more severe emotional loneliness.Conclusion Up to 91.6%of the elderly in our study sample were moderately lonely or above.The factors associated with social loneliness include self-efficacy,gender and social support.The factors associated with emotional loneliness are self-efficacy,education level,depression,and social capital.
7.Visual observation of primary sensory nerve conduction pathways in rats by anterograde tracing with adeno-associated virus
Guanggeng WU ; Ge LI ; Rui KUANG ; Yuanshan ZENG ; Zhaowei ZHU ; Bo HE
Chinese Journal of Microsurgery 2024;47(6):647-654
Objective:To discover a novel and intuitive anterograde tracing method for observing the course of sensory nerve fibers in dorsal root ganglia (DRG).Methods:From July 2022 to August 2023, studies were conducted in the Department of Plastic Surgery of the First Affiliated Hospital of Sun Yat-sen University. Three healthy 1-month old female SD rats, weighed approximately 180-220 g, were randomly selected. An adeno-associated virus carrying a neuron-specific promoter and red fluorescent protein (AAV- syp-mCherry) was prepared. The virus was injected into the spinal roots outside L 4-L 6 DRG through sterile surgery. After 1 month of breeding, L 4-L 6 spinal cord tissue of immunofluorescent staining of the side injected with viral tracer, DRG, sciatic nerve, and plantar skin of the SD rats were collected for immunofluorescent staining of neurofilament protein (NF) and microtubule associated protein 2 (MAP2). Distribution characteristics of AAV-positive nerve fibers were observed using a confocal microscope by average optical density (AOD) . Results:One month after injection of the viral tracer, red markers were visible in the dorsal horn of the L 4-L 6 spinal cord (AOD=0.5419±0.0245), DRG (AOD=0.4917±0.0087), sciatic nerve (AOD=0.6237±0.0634), dermis of plantar skin and skin appendages on the injected side (AOD=0.4943±0.0165). The red fluorescent clusters were found co-labeled with NF-positive nerve fibers or MAP2-positive neurons, it suggested that AAV- syp-mCherry could be transported anterogradely within sensory axons to distant target organs (skin) and offered a long-term image. Conclusion:The anterograde tracing method by adeno-associated virus can effectively show the complete trace of the central and peripheral processes of primary sensory neurons, and can serve as an effective methodology in observation of the pathways of peripheral sensory nerve fibers.
8. METTL3-mediated m6A modification involved in electrical remodeling of atrial cardiomyocytes under high hydrostatic pressure
Pan-Yue LIU ; Fei-Fei XIAO ; Pan-Yue LIU ; Long ZENG ; Hai-Yin XIAO ; Fei-Fei XIAO ; Rui ZHU ; Hui YANG ; Su-Juan KUANG ; Chun-Yu DENG ; Fang RAO ; Wei WEI
Chinese Pharmacological Bulletin 2023;39(12):2258-2265
To investigate the regulation of N6- methyladenosine ( m6A ) modification on L-type calcium channels in atrial myocytes under high hydrostatic pressure, mediated by methyltransferase-like protein 3 ( METTL3 ). Methods C57BL/6J mice were randomly assigned to the control group and the hypertension group ( treated with continuous administration of angiotensin for four weeks ). Masson staining was used to observe the fibrosis of mouse atrial tissue, while dot blot assay and Western blot were used to detect the levels of m6A, METTL3, and Cavi1 2 in the atrial tissue. A high hydrostatic pressure model was constructed using the HL-1 cell line cultured in vitro, and METTL3 was intervened to observe changes in m6A expression levels, METTL3 and Cavi1 2 levels in cells,and action potential duration ( APD ) and L-type calcium current ( I
9.Status and associated factors of mild cognitive impairment among the elderly in Shanghai community
Yuting YANG ; Chaowei FU ; Zhaohua XIN ; Jialie FANG ; Rui SONG ; Jiawen KUANG ; Yuwen ZHANG ; Haocen LI ; Jingyi WANG
Shanghai Journal of Preventive Medicine 2023;35(10):1016-1024
ObjectiveTo explore the status of mild cognitive impairment (MCI) among the elderly in Shanghai communities, and to identify the factors associated with MCI. MethodsThe Montreal Cognitive Assessment-Basic (MoCA-B) was used to screen for MCI in elderly adults. Logistic regression analysis was conducted to identify the factors associated with MCI. ResultsAmong 629 participants, 226 (35.90%) were positive for MCI. Older age (OR=1.04, 95%CI: 1.01-1.07), lower family income (average OR=2.20, 95%CI: 1.01-4.80; poor OR=2.59, 95%CI: 1.03-6.50), hearing impairment affecting daily life (OR=1.86, 95%CI: 1.19-2.91), and anxiety symptoms (OR=1.58, 95%CI: 1.02-2.44) were associated with the positive for MCI. Living in central urban area (OR=0.57, 95%CI: 0.37-0.89) and having higher social support (OR=0.97, 95%CI: 0.94-1.00) were protective factors for MCI. ConclusionThe current status of MCI among the elderly in Shanghai communities is not optimistic. It is important and necessary to establish the cognitive-friendly community for the elderly.
10.Clinical and genetic analysis of a Chinese pedigree affected with Dyggve-Melchior-Clausen syndrome due to a novel frameshift variant of DYM gene.
Lele KUANG ; Rui PENG ; Bin LIU ; Di XI ; Qiurong CHANG ; Yuping GAO
Chinese Journal of Medical Genetics 2022;39(4):370-373
OBJECTIVE:
To explore the genetic basis of a Chinese pedigree affected with Dyggve-Melchior-Clausen syndrome.
METHODS:
Whole exome sequencing and Sanger sequencing were carried out to detect potential pathogenic variants associated with the syndrome. The function of candidate variant was verified by Western blotting.
RESULTS:
A novel homozygous variant, c.1222delG of the DYM gene was detected in the two affected siblings, for which both parents were heterozygous carriers. The variant has caused replacement of Asp by Met at amino acid 408 and generate a premature stop codon p.Asp408Metfs*10. Western blotting confirmed that the variant can result in degradation of the mutant DYM protein, suggesting that it is a loss of function variant.
CONCLUSION
The homozygous c.1222delG frameshift variant of the DYM probably underlay the Dyggve-Melchior-Clausen syndrome in the two affected siblings. Above findings has enabled clinical diagnosis and genetic counseling for the family.
China
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Dwarfism/genetics*
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Humans
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Intellectual Disability
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Osteochondrodysplasias/genetics*
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Pedigree

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