1.Transcriptome analysis and catechin synthesis genes in different organs of Spatholobus suberectus.
Wei-Qi QIN ; Quan LIN ; Ying LIANG ; Fan WEI ; Gui-Li WEI ; Qi GAO ; Shuang-Shuang QIN
China Journal of Chinese Materia Medica 2025;50(12):3297-3306
To study the differences in transcript levels among different organs of Spatholobus suberectus and to explore the genes encoding enzymes related to the catechin biosynthesis pathway, this study utilized the genome and full-length transcriptome data of S. suberectus as references. Transcriptome sequencing and bioinformatics analysis were performed on five different organs of S. suberectus-roots, stems, leaves, flowers, and fruits-using the Illumina NovaSeq 6000 platform. A total of 115.28 Gb of clean data were obtained, with GC content values ranging from 45.19% to 47.54%, Q20 bases at 94.17% and above, and an overall comparison rate with the reference genome around 90%. In comparisons between the stem and root, stem and leaf, stem and flower, and stem and fruit, 10 666, 9 674, 9 320, and 5 896 differentially expressed genes(DEGs) were identified, respectively. The lowest number of DEGs was found in the stem and root comparison group. KEGG enrichment analysis revealed that the DEGs were mainly concentrated in the pathways of phytohormone signaling, phenylalanine biosynthesis, etc. A total of 39 genes were annotated in the catechin biosynthesis pathway, with at least one highly expressed gene found in all organs. Among these, PAL1, PAL2, C4H1, C4H3, 4CL1, 4CL2, and DFR2 showed high expression in the stems, suggesting that they may play important roles in the biosynthesis of flavonoids in S. suberectus. This study aims to provide important information for the in-depth exploration of the regulation of catechin biosynthesis in S. suberectus through transcriptome analysis of its different organs and to provide a reference for the further realization of S. suberectus varietal improvement and molecular breeding.
Catechin/biosynthesis*
;
Gene Expression Profiling
;
Gene Expression Regulation, Plant
;
Plant Proteins/metabolism*
;
Fabaceae/metabolism*
;
Transcriptome
;
Flowers/metabolism*
;
Plant Stems/metabolism*
;
Plant Leaves/metabolism*
;
Plant Roots/metabolism*
;
Fruit/metabolism*
2.Jatrogricaine A: a new diterpenoid with a 5/6/6/4 carbon ring system from the stems of Jatropha podagrica.
Lin CHEN ; Jia-Luo HUANG ; Lei ZHANG ; Hai-Yan TIAN ; Sheng YIN
Chinese Journal of Natural Medicines (English Ed.) 2019;17(4):298-302
Jatrogricaine A (1), a new diterpenoid possessing a 5/6/6/4 carbon ring system, together with eight known diterpenoids (2-9) were isolated from the stems of Jatropha podagrica. Their structures were elucidated by extensive spectroscopic methods and the absolute configuration of 1 was determined by single crystal X-ray diffraction analysis. All compounds were evaluated for their anti-inflammatory activities in vitro, and compound 3 showed significant inhibitory effects against nitric oxide (NO) production in lipopolysaccharide (LPS)-induced RAW264.7 macrophage cells with an IC of 13.44 ± 0.28 μmol·L, being comparable to the positive control, quercetin (IC 17.00 ± 2.10 μmol·L).
Animals
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Anti-Inflammatory Agents
;
chemistry
;
pharmacology
;
Carbon
;
analysis
;
Diterpenes
;
chemistry
;
pharmacology
;
Inhibitory Concentration 50
;
Jatropha
;
chemistry
;
Lipopolysaccharides
;
toxicity
;
Macrophages
;
drug effects
;
metabolism
;
Mice
;
Molecular Structure
;
Nitric Oxide
;
metabolism
;
Plant Extracts
;
chemistry
;
pharmacology
;
Plant Stems
;
chemistry
;
RAW 264.7 Cells
3.Mechanisms of Toxicity and Cardiotoxicity of Alcohol Extract from Root, Stem and Leaf of Chloranthus Serratus.
Shu Ping SUN ; Hong Xing LI ; Xiao Ping ZHANG ; Yun Fei MA ; Mei YANG
Journal of Forensic Medicine 2019;35(2):224-229
Objective To compare the differences of cardiotoxicity of alcohol extract from root, stem and leaf of Chloranthus serratus in the rats, and discuss preliminarily its mechanism of toxicity. Methods Rats were randomly divided into four groups: blank, root alcohol, stem alcohol and leaf alcohol, with 8 in each group. After 14 days of continuous intragastric administration, the body mass change curves were drawn. The cardiac coefficient was calculated. The contents of creatine kinase (CK), creatine kinase isoenzyme (CK-MB), lactate dehydrogenase (LDH) and α-hydroxybutyrate dehydrogenase (α-HBDH) as well as the content changes of oxidative stress indexes - total superoxide dismutase (T-SOD) and malondialdehyde (MDA) in the serum of rats were detected. The cardiac pathomorphology changes in the rats were observed. The expression of intercellular adhesion molecule (ICAM-1) and heme oxygenase (HO-1) in myocardial tissue was detected. Results Body mass growth rate: stem alcohol group was the smallest, followed by leaf alcohol group. The difference of cardiac coefficient of every group had no statistical significance (P>0.05). The myocardial tissues of stem alcohol group suffered the most serious damage, followed by the leaf alcohol group. The contents of CK, CK-MB, LDH and α-HBDH in stem alcohol group increased (P<0.05). The increase of MDA content and decrease of T-SOD content in stem alcohol group had statistical significance compared with the blank group and root alcohol group, while the leaf alcohol group only had statistical significance in the decrease of T-SOD content compared with the blank group (P<0.05). The positive expression of ICAM-1 enhanced and the expression of HO-1 protein decreased in every group after the intervention of different extracts. The change trend was stem alcohol > leaf alcohol > root alcohol group. Conclusion The alcohol extract from the stem has the highest cardiotoxicity, followed by the leaf extract, and its mechanism of toxicity may be related to oxidative stress.
Animals
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Cardiotoxicity
;
Ethanol
;
Heart/drug effects*
;
Malondialdehyde
;
Myocardium/metabolism*
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Oxidative Stress/physiology*
;
Plant Extracts/toxicity*
;
Plant Leaves/chemistry*
;
Plant Roots/chemistry*
;
Plant Stems/chemistry*
;
Random Allocation
;
Rats
;
Rats, Sprague-Dawley
4.Phenolic constituents from stems of Ilex asprella.
Jian-Yong XING ; Bing-Zhao DU ; Xiao FENG ; He-Xin-Ge ZHANG ; Zheng-Zhou HAN ; Zeng-Ping GAO ; Peng-Fei TU ; Xing-Yun CHAI
China Journal of Chinese Materia Medica 2018;43(21):4267-4273
Phytochemical investigation on Ilex asprella stems by using various chromatographic techniques led to the isolation of 18 phenolic constituents. Based on spectroscopic data analyses and/or comparison of the spectroscopic data with those in literature, these constituents were identified, including two lignans (1, 2), five phenylpropanes (3-7), six chlorogenic analogues (8-13), and five benzoic analogues (14-18). Among them, compounds 3-7, 9, 11, 13, 14, 17, and 18 were isolated from genus Ilex for the first time, and 2, 8, 10, 15, and 16 were isolated from this species for the first time. The in vitro anti-inflammatory assay results showed that compounds 8, 9, 11, 13, and 15 possessed moderate inhibition on the NO production in RAW264.7 cells with IC₅₀ values of 51.1-85.8 μmol·L⁻¹. The present study brought preliminary reference for the clarification of therapeutic ingredients of I. asprella with anti-inflammatory efficacy and its quality evaluation.
Animals
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Anti-Inflammatory Agents
;
isolation & purification
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pharmacology
;
Ilex
;
chemistry
;
Mice
;
Nitric Oxide
;
metabolism
;
Phenols
;
chemistry
;
Phytochemicals
;
isolation & purification
;
pharmacology
;
Plant Stems
;
chemistry
;
RAW 264.7 Cells
5.Effects of light intensity on associated enzyme activity and gene expression during callus formation of Vitis vinifera.
Rong LIU ; Guowei YANG ; Yueyan WU ; Huiyun RAO ; Xuefu LI ; Meiqin LI ; Pingxian QIAN
Chinese Journal of Biotechnology 2015;31(8):1219-1229
We analyzed the best light intensity for callus induction and maintenance in Vitis vinifera and explored the mechanism of grape callus browning. Tender stem segments of grape cultivar "gold finger" were used to study the effects of different light intensities (0, 500, 1 000, 1 500, 2 000, 2 500, 3 000 and 4 000 Lx) on the induction rate, browning rate and associated enzyme activity and gene expression during Vitis vinifera callus formation. The callus induction rate under 0, 500, 1 000 and 1 500 Lx was more than 92%, significantly higher than in other treatments (P < 0.05). A lower browning rate and better callus growth were also observed during subculture under 1 000 and 1 500 Lx treatments. We found that chlorogenic acid, caffeic acid, p-hydroxybenzoic acid and coumaric acid contents were correlated with the browning rate of callus, among which chlorogenic acid content was positively correlated with the browning rate (P < 0.05). Peroxidase (POD) and polyphenol oxidase (PPO) activities were negatively correlated with the browning rate of callus (P < 0.01). The POD, PPO and phenylalanine ammonialyase (PAL) expression levels were positively correlated with the browning rate at P < 0.05 or P < 0.01. An appropriate light intensity for the tissue culture of Vitis vinifera was 1 000-1 500 Lx, higher or lower light intensities significantly impaired normal callus growth.
Caffeic Acids
;
chemistry
;
Catechol Oxidase
;
chemistry
;
Culture Media
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chemistry
;
Gene Expression Regulation, Plant
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Light
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Peroxidase
;
metabolism
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Phenylalanine Ammonia-Lyase
;
metabolism
;
Plant Stems
;
enzymology
;
radiation effects
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Tissue Culture Techniques
;
Vitis
;
enzymology
;
radiation effects
6.Study on winter dormancy of Thesium chinense and its phenological phase.
Ling-shan SONG ; Xiao-ming ZHANG ; Qiao-sheng GUO ; Lu CHEN ; Chang-lin WANG
China Journal of Chinese Materia Medica 2015;40(23):4585-4590
In order to explore reasonable artificial cultivation pattern of Thesium chinense, the biological characteristics and nutrients change in the process of winter dormancy of T. chinense was studied. The phenological period of T. chinense was observed by using fixed-point notation and the starch grains changes were determined dynamically by PAS-vanadium iron hematoxylin staixjing method. Soluble sugar and starch content were measured by anthrone-sulfuric acid method and amylase activity was determined by DN'S method. The results showed that the normal life cycle of T. chinense was two years. T. chinense was growing by seed in the first year, but growing by the root neck bud in the second year. During the process of dormancy, starch and soluble sugar could mutual transformation in different periods. T. chinense had sufficient carbohydrate to maintain growth and also a lot of small molecules to improve their ability to fight against adversity.
Plant Dormancy
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Plant Leaves
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chemistry
;
growth & development
;
metabolism
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Plant Roots
;
chemistry
;
growth & development
;
metabolism
;
Plant Stems
;
chemistry
;
growth & development
;
metabolism
;
Santalaceae
;
chemistry
;
growth & development
;
metabolism
;
Seasons
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Starch
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analysis
;
metabolism
7.Analysis on morphological characteristics, photosynthetic characteristics and chemical constituents of Inula lineariifolia from different populations.
Feng-chen CHEN ; Chang-lin WANG ; Qiao-sheng GUO ; Xin TIAN ; Yuan-yuan QIU
China Journal of Chinese Materia Medica 2015;40(22):4389-4394
Twelve populations of Inula lineariifolia were used as materials to measure morphological characteristics, photosynthetic parameters and chemical constituents. It aims to provide a theoretical basis for germplasm resources evaluation. The results showed that I. lineariifolia had relatively rich morphological diversity, there were significant differences of morphological characteristics, photosynthetic parameters and chemical constituents among populations. There was positive correlation on morphological characteristics and P(n). Twelve populations were divided into three-type. The three populations of Xuyi, Mingguang and Fengyang were of narrower-longer leaf, bigger biomass,better photosynthetic and higher chemical constituents. Then they were classified for a similar group. It proved that the three populations were more suitable for cultivation and promotion.
Biomass
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China
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Flowers
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chemistry
;
growth & development
;
metabolism
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Inula
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chemistry
;
classification
;
growth & development
;
metabolism
;
Photosynthesis
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Plant Leaves
;
chemistry
;
growth & development
;
metabolism
;
Plant Stems
;
chemistry
;
growth & development
;
metabolism
8.Ethyl acetate-soluble chemical constituents from branch of Hypericum petiolulatum.
Qi ZHAO ; Hai-long ZHANG ; Xue ZHANG ; Xiao-meng LI ; Yu-zhen SUN ; Hang SU
China Journal of Chinese Materia Medica 2015;40(9):1755-1758
The stems and branches of Hypericum petiolulatum were extracted by alcohol and liquid-liquid extraction. Seven furofuran lignans were isolated from the ethyl acetate fraction of ethanol extract of H. petiolulatum by using silica gelchromatography, Sephadex LH-20 chromatography, medium-pressure liquid chromatography and preparative HPLC. Their structures were identified by the spectroscopic methods as pinoresinol (1), medioresinol (2), 8-acetoxypinoresinol (3), epipinoresinol (4), (+)-syringaresinol (5), (+)-1-hydroxysyringaresinol (6) and erythro-buddlenolE (7). All the isolates were firstly found in H. petiolulatum. In the bioassay, compound 7 showed remarkable antioxidative activity inhibiting Fe(+2)-cystine induced rat liver microsomal lipid peroxidation with inhibitory rate 38% at a concentration of 1 x 10(-6) mol · L(-1) (positive control Vit E with the inhibitory rate of 35% at the same concentration).
Animals
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Antioxidants
;
chemistry
;
isolation & purification
;
pharmacology
;
Drugs, Chinese Herbal
;
chemistry
;
isolation & purification
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pharmacology
;
Hypericum
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chemistry
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Lipid Peroxidation
;
drug effects
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Microsomes, Liver
;
drug effects
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metabolism
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Molecular Structure
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Oxidative Stress
;
drug effects
;
Plant Stems
;
chemistry
;
Rats
9.Effects of nitrogen form on growth and quality of Chrysanthemums morifolium.
Peng ZHANG ; Kang-cai WANG ; Ming-chao CHENG ; Qing-hai GUO ; Jie ZHAO ; Xiu-Mei ZHAO ; Li LI
China Journal of Chinese Materia Medica 2014;39(17):3263-3268
This paper is aimed to study the effects of nitrogen form on the growth and quality of Chrysanthemums morifolium at the same nitrogen level. In order to provide references for nutrition regulation of Ch. morifolium in field production, pot experiments were carried out in the greenhouse at experimental station of Nanjing Agricultural University. Five proportions of ammonium and nitrate nitrogen were set up and a randomized block design was applied four times repeatedly. The results showed that the growth and quality of Ch. morifolium were significantly influenced by the nitrogen form. The content of chlorophyll and photosynthesis rate were the highest at the NH4(+) -N /NO3(-) -N ratio of 25:75; The activities of NR in different parts of Ch. -morifolium reached the highest at the NH4(+) - N/NO3(-) -N ratio of 0: 100. The contents of nitrate nitrogen in the root and leaves reached the highest at the NH4(+) -N/NO3(-) -N ratio of 50:50. The activities of GS, GOGAT and the content of amylum increased with the ratio of NO3(-) -N decreasing and reached it's maximum at the NH4 + -N/NO3 - -N ratio of 100: 0. The content of ammonium nitrogen were the highest at the NH4 + -N /NO3 --N ratio of 75: 25, while the content of soluble sugar reached the highest at the NH4(+)-N/NO3(-) -N ratio of 25: 75. The content of flavones, chlorogenic acid and 3,5-O-dicoffeoylqunic acid were 57.2 mg x g(-1), 0.673% and 1.838% respectively, reaching the maximum at the NH4(+) -N /NO3(-) -N ratio of 25:75; The content of luteoloside increased with the ratio of NO3(-) -N increasing and reached it's maximum at the NH4(+) -N/NO3(-) -N ratio of 0: 100. The yield of Ch. morifolium reached it's maximum at the NH4(+) -N /NO3(-) -N ratio of 25:75. Nitrogen form has some remarkable influence on the nitrogen metabolism, photosynthesis and growth, Nitrogen form conducive to the growth and quality of Ch. morifolium at the NH4(+) -N /NO3(-) -N ratio of 25: 75.
Ammonium Compounds
;
metabolism
;
pharmacology
;
Chlorophyll
;
metabolism
;
Chrysanthemum
;
drug effects
;
growth & development
;
metabolism
;
Flowers
;
drug effects
;
growth & development
;
metabolism
;
Glutamate Synthase
;
metabolism
;
Glutamate Synthase (NADH)
;
metabolism
;
Glutamate-Ammonia Ligase
;
Nitrates
;
metabolism
;
pharmacology
;
Nitrogen
;
metabolism
;
pharmacology
;
Photosynthesis
;
drug effects
;
Plant Leaves
;
drug effects
;
growth & development
;
metabolism
;
Plant Proteins
;
metabolism
;
Plant Roots
;
drug effects
;
growth & development
;
metabolism
;
Plant Stems
;
drug effects
;
growth & development
;
metabolism
10.Molecular characterization of a HMG-CoA reductase gene from a rare and endangered medicinal plant, Dendrobium officinale.
Lin ZHANG ; Ji-Tao WANG ; Da-Wei ZHANG ; Gang ZHANG ; Shun-Xing GUO
Acta Pharmaceutica Sinica 2014;49(3):411-418
The 3-hydroxy-3-methylglutaryl-CoA reductase (HMGR) catalyzes the conversion of HMG-CoA to mevalonate in mavalonic acid pathway, which is the first committed step for isoprenoid biosynthesis in plants. However, it still remains unclear whether HGMR gene plays a role in the isoprenoid biosynthesis in Dendrobium officinale, an endangered epiphytic orchid species. In the present study, a HMGR encoding gene, designed as DoHMGR1 (GenBank accession JX272632), was identified from D. officinale using the reverse transcription polymerase chain reaction (RT-PCR) and rapid amplification of cDNA ends (RACE) methods, for the first time. The full length cDNA of DoHMGR1 was 2 071 bp in length and encoded a 562-aa protein with a molecular weight of 59.73 kD and an isoelectric point (pI) of 6.18. The deduced DoHMGR1 protein, like other HMGR proteins, constituted four conserved domains (63-561, 147-551, 268-383 and 124-541) and two transmembrane motifs (42-64 and 85-107). Multiple sequence alignment and phylogenetic analyses demonstrated that DoHMGR1 had high identity (67%-89%) to a number of HMGR genes from various plants and was closely related to Vanda hybrid cultivar, rice and maize monocots. Real time quantitative PCR (qPCR) analysis revealed that DoHMGR1 was expressed in the three included organs. The transcripts were the most abundant in the roots with 2.13 fold over that in the leaves, followed by that in the stems with 1.98 fold. Molecular characterization of DoHMGR1 will be useful for further functional elucidation of the gene involving in isoprenoid biosynthesis pathway in D. officinale.
Base Sequence
;
Cloning, Molecular
;
DNA, Complementary
;
genetics
;
Dendrobium
;
enzymology
;
genetics
;
Gene Expression Regulation, Plant
;
Hydroxymethylglutaryl CoA Reductases
;
genetics
;
metabolism
;
Molecular Weight
;
Phylogeny
;
Plant Leaves
;
enzymology
;
genetics
;
Plant Roots
;
enzymology
;
genetics
;
Plant Stems
;
enzymology
;
genetics
;
Plants, Medicinal
;
enzymology
;
genetics
;
Sequence Alignment
;
Sequence Homology, Amino Acid

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