1.A Machine Learning Approach to Reference Interval Estimation for Red Cell Parameters in a South and East Asian Population
Veera Sekaran NADARAJAN ; Pavai STHANESHWAR ; Jia Qi LIM ; Angeli AMBAYYA ; Putri Junaidah Megat YUNUS
Annals of Laboratory Medicine 2026;46(1):41-51
Background:
Iron deficiency (ID) and hemoglobinopathies are highly prevalent in Southeast Asia. Accurate estimation of reference intervals (RIs) for red cell parameters is complicated by the need to exclude individuals with these conditions from the reference population. Indirect RI estimations using machine learning could help overcome these challenges.
Methods:
We developed a binary classification model using eXtreme Gradient Boosting (XGB) to distinguish normal individuals from those with ID, hemoglobinopathies, or other anemias. The model was trained on an annotated dataset comprising 5,520 complete blood count (CBC) results and validated with a holdout dataset of 2,367 CBC results. An independent dataset of 64,100 CBC results was used to identify individuals predicted to be normal, from which RIs were estimated using the refineR algorithm.
Results:
The XGB model achieved an area under the ROC of 0.97 (95% confidence interval: 0.96–0.97) for distinguishing between individuals with normal versus abnormal values. Among individuals within the independent dataset, 40,300 (62.9%) were predicted to be normal. The refineR-based reference limits (RLs) derived from this subset approximated those obtained through a direct approach. Improvements in the accuracy of indirect RL estimates were most evident for hematocrit, hemoglobin, and red cell concentrations.
Conclusions
Combining XGB with refineR to indirectly derive RIs for red cell parameters improved the accuracy and yielded results comparable with those of directly derived RIs. A further benefit was the capacity to generate sex- and age-specific ranges, which has remained difficult to achieve through direct approaches.
2.Too Low From a Self-Blow: Diagnostic and Therapeutic Challenges in a Case of Hirata’s Syndrome
Tharsini Sarvanandan ; Ying Guat Ooi ; Jun Kit Khoo ; Tricia Lopez ; Nicholas Ken Yoong Hee ; Shireene Vethakkan ; Lee-Ling Lim ; Jeyakantha Ratnasingam ; Carolyn Chee ; Pavai Sthaneshwar ; Quan Hziung Lim
Journal of the ASEAN Federation of Endocrine Societies 2026;41(S1):50-
Introduction:
Non-diabetic hypoglycemia in older adults warrants
careful evaluation across insulin-mediated and noninsulin-mediated causes. We present a challenging case of
insulin autoimmune syndrome (IAS; Hirata’s syndrome).
Case:
An 85-year-old female presented with severe hypoglycemia (capillary blood glucose [CBG] 1.8 mmol/L) with
reduced consciousness, preceded by 2 months of recurrent
dizziness relieved by food intake. Appetite and weight were
stable. Past medical history included stage 3 chronic kidney
disease and osteoporosis, but no diabetes. Medication
review revealed a recent 2-week course of traditional
supplement, long-term Neurobion®, but no agents with
recognized hypoglycemic potential. Physical examination
showed a moderately built elderly female with a body
mass index of 24.3 kg/m² and no Cushingoid features.
Recurrent hypoglycemia (CBG nadir 1.5 mmol/L) occurred
in both fasting and postprandial states, fulfilling Whipple’s
triad. Baseline investigations showed an estimated
glomerular filtration rate of 42 mL/min/1.73 m², AM
cortisol of 700 mmol/L, and unremarkable liver and thyroid
function tests. During a hypoglycemic episode (CBG 2.3
mmol/L), plasma insulin and C-peptide were inappropriately raised at 203.6 mU/L (reference interval [RI]: 3.0–
25.0) and 33 ng/mL (RI: 0.9–7.1), respectively, confirming
endogenous hyperinsulinemic hypoglycemia. Polyethylene
glycol precipitation showed 21% insulin recovery, raising
suspicion for an autoimmune cause. Elevated insulin
autoantibodies (175 AU/mL; RI <20) confirmed IAS.
Computed tomography of the abdomen and endoscopic
ultrasound excluded a pancreatic neuro-endocrine tumor.
Nutritional management comprising frequent low glycemic
index feeds and uncooked cornstarch was commenced.
Diazoxide 100 mg TDS caused fluid overload and severe
hyponatremia, while hypoglycemia persisted at lower doses, necessitating discontinuation. Subcutaneous octreotide 100 mg QID was required to control hypoglycemia.
Prednisolone 30 mg BD improved glycemic stability. Insulin
autoantibodies titer remained 175 AU/mL at 2 weeks;
reassessment was conducted at 4 weeks with consideration for biologics if persistent.
:
doses, necessitating discontinuation. Subcutaneous octreotide 100 mg QID was required to control hypoglycemia.
Prednisolone 30 mg BD improved glycemic stability. Insulin
autoantibodies titer remained 175 AU/mL at 2 weeks;
reassessment was conducted at 4 weeks with consideration for biologics if persistent.
Conclusion
Endogenous hyperinsulinemic hypoglycemia, after
excluding insulinoma, should raise suspicion for IAS.
Management includes removing triggers, supportive care,
and immunomodulatory therapy in severe cases.
3.Discordant TFT After Total Thyroidectomy: Challenges of Diagnosing Resistance to Thyroid Hormone
Tan Jia Miao ; Pavai Sthaneshwar ; Shireene Ratna Vethakkan
Journal of the ASEAN Federation of Endocrine Societies 2026;41(S1):110-111
Introduction:
Thyroid hormone resistance syndrome (THR) is a disorder
characterized by reduced responsiveness of target tissues
to thyroid hormones with non-suppressed thyroidstimulating hormone (TSH) despite elevated free thyroxine
4 (FT4). Diagnosing and managing THR in athyreotic
patients, however, is challenging; indeed, TSH levels post
thyroidectomy for Differentiated Thyroid Carcinoma in
patients with THR have been reported to reach levels as high
as 112.59 mIU/L despite high-dose thyroxine-suppressive
therapy. This case highlights the complexities in diagnosing
Resistance to Thyroid Hormone (RTH) post-thyroidectomy.
Case:
A 63-year-old female with end-stage renal failure (ESRF)
on hemodialysis and prior parathyroidectomy for tertiary
hyperparathyroidism underwent total thyroidectomy in
1997 for presumed benign goiter. Following surgery, she
demonstrated persistently elevated TSH, ranging from 93.2
to 670.4 mIU/L (0.55–4.78 mIU/L), with normal to mildly
elevated FT4 levels, ranging from 17 to 35 pmol/L (11.5–22.7
pmol/L), while on thyroxine replacement doses as low as
0.86 ug/kg. Discordant thyroid function tests (TFTs) were
consistent across different assay platforms. Polyethylene
glycol precipitation excluded macro-TSH interference.
Intermittent levothyroxine increments suppressed TSH but
led to thyrotoxic symptoms, including weight loss, heat
intolerance, insomnia, and fragility fracture. Uncontrasted
pituitary magnetic resonance imaging (risk of nephrogenic
systemic fibrosis with gadolinium in ESRF) showed a small
pituitary gland without adenoma, excluding TSH-oma.
T3 suppression test was relatively contraindicated due to
her advanced age and co-morbidities. There was no family
history of thyroid disorder; the patient’s only child had a
normal TFT, and her parents/siblings could not be tested. A
working diagnosis of RTHβ was made. She declined genetic
testing for RTH. She is currently on levothyroxine 50 mcg
OD (1.07 ug/kg) with FT4 16.1 pmol/L and TSH 562 mIU/L
with no symptoms/signs of hypo or hyperthyroidism.
Conclusion
This case highlights the diagnostic challenges in managing
possible RTHβ post-total thyroidectomy. Treatment should
be guided by clinical status and target of mid-to-normal
FT4 rather than TSH to avoid iatrogenic thyrotoxicosis.
Thyroidectomy
;
Thyroid Hormones
4.Calculated parameters for the diagnosis of Wilson disease.
Nada Syazana ZULKUFLI ; Pavai STHANESHWAR ; Wah-Kheong CHAN
Singapore medical journal 2023;64(3):188-195
INTRODUCTION:
The diagnosis of Wilson disease (WD) is plagued by biochemical and clinical uncertainties. Thus, calculated parameters have been proposed. This study aimed to: (a) compare the diagnostic values of non-caeruloplasmin copper (NCC), NCC percentage (NCC%), copper-caeruloplasmin ratio (CCR) and adjusted copper in WD; and (b) derive and evaluate a discriminant function in diagnosing WD.
METHODS:
A total of 213 subjects across all ages who were investigated for WD were recruited. WD was confirmed in 55 patients, and the rest were WD free. Based on serum copper and caeruloplasmin values, NCC, NCC%, CCR and adjusted copper were calculated for each subject. A function was derived using discriminant analysis, and the cut-off value was determined through receiver operating characteristic analysis. Classification accuracy was found by cross-tabulation.
RESULTS:
Caeruloplasmin, total copper, NCC, NCC%, CCR, adjusted copper and discriminant function were significantly lower in WD compared to non-WD. Discriminant function showed the best diagnostic specificity (99.4%), sensitivity (98.2%) and classification accuracy (99.1%). Caeruloplasmin levels <0.14 g/L showed higher accuracy than the recommended 0.20 g/L cut-off value (97.7% vs. 87.8%). Similarly, molar NCC below the European cut-off of 1.6 umol/L showed higher accuracy than the American cut-off of 3.9 umol/L (80.3% vs. 59.6%) (P < 0.001). NCC%, mass NCC, CCR and adjusted copper showed poorer performances.
CONCLUSION
Discriminant function differentiates WD from non-WD with excellent specificity, sensitivity and accuracy. Performance of serum caeruloplasmin <0.14 g/L was better than that of <0.20 g/L. NCC, NCC%, CCR and adjusted copper are not helpful in diagnosing WD.
Humans
;
Hepatolenticular Degeneration/diagnosis*
;
Copper/analysis*
;
Ceruloplasmin/metabolism*
;
Repressor Proteins
6.A national audit of estimated glomerular filtration rate and proteinuria and the MACB CKD Task Force recommendations
The Malaysian Journal of Pathology 2021;43(1):41-48
Introduction: The Malaysian Association of Clinical Biochemists (MACB) established a Task Force
for Chronic Kidney Disease. A survey was undertaken by the Task Force on the reporting of estimated
glomerular filtration rate (eGFR) and urine albumin by hospital laboratories in Malaysia in both the
government and private sectors. Materials and Methods: An e-mail invitation to participate in an
online survey was sent to hospital laboratories in Malaysia (n=140). Questions regarding methods
for measuring creatinine, equations for calculating eGFR, eGFR reporting, the terminology used
in reporting urine albumin, types of samples and the cut-off values used for normal albuminuria.
Results: A total of 42/140 (30%) laboratories answered the questionnaire. The prevalent method used
for serum creatinine measurement was the Jaffé method (88.1%) traceable to isotope-dilution mass
spectrometry. eGFR was reported along with serum creatinine by 61.9% of laboratories while 33.3%
of laboratories report eGFR on request. The formula used for eGFR reporting was mainly MDRD
(64.3%) and results were reported as exact numbers even when the eGFR was >60 ml/min/1.73m2
.
The term microalbumin is still used by 83.3% of laboratories. There is a large heterogeneity among
the labs regarding the type of sample recommended for measuring urine albumin, reference interval
and reporting units. Conclusion: It is evident that the laboratory assessment of chronic kidney disease
in Malaysia is not standardised. It is essential to provide a national framework for standardised
reporting of eGFR and urine albumin. Recommendations developed by the MACB CKD Task Force,
if adopted by all laboratories, will lead to a reduction in this variability.
7.Establishing the cut off values of androgen markers in the assessment of polycystic ovarian syndrome
R N Dineshinee Nadaraja ; Pavai STHANESHWAR ; Nuguelis RAZALI
The Malaysian Journal of Pathology 2018;40(1):33-39
Introduction: Hyperandrogenism remains as one of the key features in Polycystic Ovarian Syndrome (PCOS) and can be assessed clinically or determined by biochemical assays. Hirsutism is the most common clinical manifestation of hyperandrogenism. The clinical assessment is subjected to wide variability due to poor interobserver agreement and multiple population factors such as ethnic variation, cosmetic procedures and genetic trait. The difficulty in resolving the androgen excess biochemically is due to a lack of consensus as to which serum androgen should be measured for the diagnosis of PCOS. The aim of the study was to compare and establish the diagnostic cut off value for different androgen biomarker for the diagnosis of PCOS. Materials and Methods: A total of 312 patients classified to PCOS (n = 164) and non PCOS (n = 148) cohorts were selected from the Laboratory Information System (LIS) based on serum total testosterone (TT) and sex hormone binding globulin (SHBG) from the period of 1st April 2015 to 31st March 2016. PCOS was diagnosed based on Rotterdam criteria. Clinical hyperandrogenism and ultrasound polycystic ovarian morphology were obtained from the clinical records. The other relevant biochemical results such as serum luteinizing hormone (LH), follicle stimulating hormone (FSH) and albumin were also obtained from LIS. Free androgen index (FAI), calculated free testosterone (cFT) and calculated bioavailable testosterone (cBT) were calculated for these patients. Receiver Operating Characteristic (ROC) curve analysis were performed for serum TT, SHBG, FAI, cFT, cBT and LH: FSH ratio to determine the best marker to diagnose PCOS. Results: All the androgen parameters (except SHBG) were significantly higher in PCOS patients than in control (p<0.0001). The highest area under curve (AUC) curve was found for cBT followed by cFT and FAI. TT and LH: FSH ratio recorded a lower AUC and the lowest AUC was seen for SHBG. cBT at a cut off value of 0.86 nmol/L had the highest specificity, 83% and positive likelihood ratio (LR) at 3.79. This is followed by FAI at a cut off value of 7.1% with specificity at 82% and cFT at a cut off value of 0.8 pmol/L with specificity at 80%. All three calculated androgen indices (FAI, cFT and cBT) showed good correlation with each other. Furthermore, cFT, FAI and calculated BT were shown to be more specific with higher positive likelihood ratio than measured androgen markers. Conclusions: Based on our study, the calculated testosterone indices such as FAI, cBT and cFT are useful markers to distinguish PCOS from non-PCOS. Owing to ease of calculation, FAI can be incorporated in LIS and can be reported with TT and SHBG. This will be helpful for clinician to diagnose hyperandrogenism in PCOS.
8.Severe asymptomatic hypophosphataemia in a child with T-acute lymphoblastic leukaemia
Nur Haidar ZAKARIA ; Pavai STHANESHWAR ; Hemalatha SHANMUGAM
The Malaysian Journal of Pathology 2017;39(3):317-320
Hypophosphataemia is a metabolic disorder that is commonly encountered in critically ill patients.Phosphate has many roles in physiological functions, thus the depletion of serum phosphate could leadto impairment in multiple organ systems, which include the respiratory, cardiovascular, neurologicaland muscular systems and haematological and metabolic functions. Hypophosphataemia is defined asplasma phosphate level below 0.80 mmol per litre (mmol/L) and can be further divided into subgroupsof mild (plasma phosphate of 0.66 to 0.79 mmol/L), moderate (plasma phosphate of 0.32 to 0.65mmol/L) and severe (plasma phosphate of less than 0.32 mmol/L). The causes of hypophosphataemiainclude inadequate phosphate intake, decreased intestinal absorption, gastrointestinal or renal phosphateloss, and redistribution of phosphate into cells. Symptomatic hypophosphataemia associated withhaematological malignancies has been reported infrequently. We report here a case of asymptomaticsevere hypophosphataemia in a child with acute T-cell lymphoblastic leukaemia.A 14-year-old Chinese boy was diagnosed to have acute T cell lymphoblastic leukaemia (ALL).His serum biochemistry results were normal except inorganic phosphate and lactate dehydrogenaselevels. The serum inorganic phosphate level was 0.1mmol/L and the level was low on repeatedanalysis. The child had no symptoms related to low phosphate levels. The possible causes of lowphosphate were ruled out and urine Tmp/GFR was normal. Chemotherapy regime was started andthe serum phosphate levels started to increase. Hypophosphataemia in leukaemia was attributed toshift of phosphorus into leukemic cells and excessive cellular phosphate consumption by rapidlyproliferating cells. Several reports of symptomatic hypophosphataemia in myelogenous andlymphoblastic leukaemia in adults have been reported. To our knowledge this is the first case ofsevere asymptomatic hypophosphataemia in a child with ALL.
9.Importance of screening for macroprolactin in all hyperprolactinaemic sera
Farhi Ain Jamaluddin ; Pavai Sthaneshwar ; Zanariah Hussein ; Nor’ashikin Othman ; Chan Siew Peng
The Malaysian Journal of Pathology 2013;35(1):59-63
Introduction: Prolactin (PRL) exists in different forms in human serum. The predominant form
is monomeric PRL (molecular mass 23 kDa) with smaller amounts of big PRL (molecular mass
50–60 kDa) and at times macroprolactin (molecular mass 150–170 kDa). Macroprolactin, generally
considered to be biologically inactive, accounts for the major part of prolactin in some patients.
Different immunoassays for prolactin differ in reactivity with this macromolecular complex. Aim:
The present study was undertaken to assess the incidence of macroprolactinaemia in our cohort
of hyperprolactinemic patients. Method: 204 samples with hyperprolactinemia were evaluated for
macroprolactinemia by polyethylene glycol (PEG) precipitation and gel fi ltration chromatography
(GFC). Recoveries <60% after PEG precipitation were considered to have macroprolactinaemia.
Results: A total of 43 (21%) of these patients had less than 60% recovery after PEG precipitation.
GFC confi rmed that in seven of these patients macroprolactin was the major part of the prolactin.
Recoveries were < 40% PEG precipitation in these samples. Combined macro and hyperprolactinemia
was observed in two samples and the recovery after PEG precipitation was >40% but 50%. The
incidence of macroprolactinemia in our cohort of hyperprolactinaemic patients was noted to be 4.4%.
Conclusion: Macroprolactin is a signifi cant cause of misdiagnosis, unnecessary investigation, and
inappropriate treatment and hence it is useful to screen all patients with high PRL levels with PEG
precipitation and to apply GFC to samples with recoveries <50%.
10.Analytical and diagnostic performance of an automated anti-CCPassay
PAVAI Sthaneshwar ; SARGUNAN Sokkalingam ; AMIR Azlan Zain ; CHOW Sook-Khuan
The Malaysian Journal of Pathology 2011;33(2):101-106
Aim: Autoantibodies against cyclic citrullinated peptide (anti-CCP) are considered to be a sensitive
and specifi c marker for rheumatoid arthritis (RA). This study evaluated the diagnostic and analytical
performances of the automated anti-CCP assay. Materials and Method: Sera from 80 patients with
established RA, 65 from other rheumatic diseases (non-RA) and 55 from healthy controls were
studied using second generation anti-CCP. Rheumatoid factor (RF) was also assayed in each sample,
and the results were compared to the anti-CCP fi ndings. Serum pools were used to determine the
precision and linearity. Results: At a cut-off of 7.4 U/ml for anti-CCP, the sensitivity and specifi city
for RA were 65% and 98% respectively. RF had a sensitivity of 58% and a lower specifi city of
93 % than anti-CCP. Conclusion: The high specifi city of the assay suggests that anti-CCP
is useful in the diagnosis of rheumatoid arthritis and in our cohort of study population
anti-CCP exhibits a better diagnostic value than RF. A considerable proportion (28%) of
RF-negative RA patients were anti-CCP positive. Based on analytical performance of the
assay, we conclude that full automation and high throughput features of AxSYM makes it
an ideal platform for routine testing of anti-CCP.


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